Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g06517 Schrenkiella parvula HOM05D004802 ORTHO05D005591 1.0e-73 280.0 144 100.0
BolC5t29353H Brassica oleracea HOM05D000129 ORTHO05D005591 4.0e-70 268.1 145 96.6
BraA06t23701Z Brassica rapa HOM05D004802 ORTHO05D005591 3.4e-69 265.0 145 95.2
BcaC07g41973 Brassica carinata HOM05D004802 ORTHO05D005591 6.3e-68 260.8 148 93.9
C08p50320 Brassica napus HOM05D004802 ORTHO05D005591 6.3e-68 260.8 148 93.9
BolC8t52561H Brassica oleracea HOM05D004802 ORTHO05D005591 6.3e-68 260.8 148 93.9
AL1G18110 Arabidopsis lyrata HOM05D004802 ORTHO05D005591 8.3e-68 260.4 144 92.4
C05p05910 Brassica napus HOM05D005594 ORTHO05D006403 8.3e-68 260.4 140 96.4
CARHR007640 Cardamine hirsuta HOM05D004802 ORTHO05D005591 1.1e-67 260.0 144 92.4
A09p66160 Brassica napus HOM05D004802 ORTHO05D005591 2.4e-67 258.8 145 95.2
BraA09t41954Z Brassica rapa HOM05D004802 ORTHO05D005591 2.4e-67 258.8 145 95.2
BcaB02g06722 Brassica carinata HOM05D004802 ORTHO05D005591 2.7e-66 255.4 147 92.5
AT1G07830 Arabidopsis thaliana HOM05D004802 ORTHO05D005591 2.9e-65 251.9 145 91.0
BcaC07g42500 Brassica carinata HOM05D004802 ORTHO05D005591 1.1e-64 250.0 147 91.2
Carub.0005s0629 Capsella rubella HOM05D004802 ORTHO05D005591 2.5e-64 248.8 145 89.0
Thhalv10009035m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 1.5e-61 239.6 145 87.6
THA.LOC104818227 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 5.7e-61 237.7 146 82.9
THA.LOC104821462 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 2.4e-59 232.3 146 81.5
Cpa.g.sc110.33 Carica papaya HOM05D004802 ORTHO05D005591 4.1e-59 231.5 144 80.6
Thhalv10014955m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 7.0e-59 230.7 146 82.9
ECA232G0284 Erigeron canadensis HOM05D004802 ORTHO05D005591 1.2e-58 229.9 144 79.2
CsaV3_1G001710 Cucumis sativus L. HOM05D004802 ORTHO05D005591 2.0e-58 229.2 144 80.6
Aa31LG3G15940 Aethionema arabicum HOM05D004802 ORTHO05D005591 2.3e-57 225.7 146 80.8
HanXRQChr05g0155531 Helianthus annuus HOM05D004802 ORTHO05D005591 3.8e-57 224.9 144 79.2
Potri.014G111100 Populus trichocarpa HOM05D004802 ORTHO05D005591 6.6e-57 224.2 144 79.9
DCAR_021562 Daucus carota HOM05D004802 ORTHO05D005591 1.5e-56 223.0 144 78.5
GSVIVG01007807001 Vitis vinifera HOM05D004802 ORTHO05D005591 2.5e-56 222.2 144 79.2
Lsat_1_v5_gn_5_17000 Lactuca sativa HOM05D004802 ORTHO05D005591 4.3e-56 221.5 144 75.7
DCAR_016496 Daucus carota HOM05D004802 ORTHO05D005591 9.5e-56 220.3 144 78.5
MBI19_g12136_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 1.6e-55 219.5 144 77.8
CSS0033619 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 3.6e-55 218.4 144 77.1
Sed0010100 Sechium edule HOM05D004802 ORTHO05D005591 4.7e-55 218.0 144 77.1
Cfa019082 Carpinus fangiana HOM05D004802 ORTHO05D005591 8.0e-55 217.2 144 77.1
Rhsim12G0162600 Rhododendron simsii HOM05D004802 ORTHO05D005591 8.0e-55 217.2 144 76.4
ATR0796G060 Amborella trichopoda HOM05D004802 ORTHO05D005591 1.0e-54 216.9 144 75.7
vmacro16596 Vaccinium macrocarpon HOM05D004802 ORTHO05D005591 1.0e-54 216.9 144 75.7
Migut.D01783 Erythranthe guttata HOM05D004802 ORTHO05D005591 1.4e-54 216.5 144 75.7
Glyma.04G171700 Glycine max HOM05D004802 ORTHO05D005591 1.4e-54 216.5 144 76.4
SGA_v2.0_scaffold114G31844 Striga asiatica HOM05D004802 ORTHO05D005591 1.8e-54 216.1 144 77.1
TAR362G1012 Trochodendron aralioides HOM05D004802 ORTHO05D005591 5.2e-54 214.5 144 75.0
CANSAT80G2080 Cannabis sativa HOM05D004802 ORTHO05D005591 8.9e-54 213.8 144 75.7
LjContig00081g0027263 Lotus japonicus HOM05D004802 ORTHO05D005591 8.9e-54 213.8 144 77.8
Eucgr.B00348 Eucalyptus grandis HOM05D004802 ORTHO05D005591 1.2e-53 213.4 146 76.0
PGR083G1798 Punica granatum HOM05D004802 ORTHO05D005591 1.2e-53 213.4 144 76.4
Glyma.06G192200 Glycine max HOM05D004802 ORTHO05D005591 1.5e-53 213.0 145 77.9
MSTRG.23103 Avicennia marina HOM05D004802 ORTHO05D005591 2.6e-53 212.2 144 78.5
Hma1.2p1_0483F.1_g162710 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 2.6e-53 212.2 144 77.8
Manes.12G158200 Manihot esculenta HOM05D004802 ORTHO05D005591 2.6e-53 212.2 144 75.7
Nitab4.5_0000499g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 2.6e-53 212.2 144 74.3
Prupe.5G177600 Prunus persica HOM05D004802 ORTHO05D005591 4.4e-53 211.5 144 75.0
Lalb_Chr23g0265291 Lupinus albus HOM05D004802 ORTHO05D005591 5.8e-53 211.1 150 73.3
VMungo1309G2385 Vigna mungo HOM05D004802 ORTHO05D005591 5.8e-53 211.1 144 75.7
Aqoxy5G00387 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 1.3e-52 209.9 144 73.6
TWI75G1644 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 1.3e-52 209.9 144 77.1
TWI32G0003 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 2.2e-52 209.1 144 75.7
arahy.Tifrunner.gnm1.ann1.H02ACK Arachis hypogaea HOM05D004802 ORTHO05D005591 2.9e-52 208.8 146 74.0
Phvul.009G188900 Phaseolus vulgaris HOM05D004802 ORTHO05D005591 2.9e-52 208.8 144 75.0
Solyc03g114050.3 Solanum lycopersicum HOM05D004802 ORTHO05D005591 2.9e-52 208.8 144 75.0
Sopen03g033100 Solanum pennellii HOM05D004802 ORTHO05D005591 2.9e-52 208.8 144 75.0
Actinidia34948 Actinidia chinensis HOM05D004802 ORTHO05D005591 3.7e-52 208.4 133 76.7
Cpa.g.sc170.28 Carica papaya HOM05D004802 ORTHO05D005591 3.7e-52 208.4 133 78.9
MBI18_g21823_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 3.7e-52 208.4 144 73.6
arahy.Tifrunner.gnm1.ann1.J5PS4T Arachis hypogaea HOM05D004802 ORTHO05D005591 4.9e-52 208.0 146 74.0
PSO170G0191 Papaver somniferum HOM05D004802 ORTHO05D005591 4.9e-52 208.0 148 75.7
Actinidia19087 Actinidia chinensis HOM05D004802 ORTHO05D005591 6.4e-52 207.6 130 77.7
HanXRQChr05g0163301 Helianthus annuus HOM05D004802 ORTHO05D005591 6.4e-52 207.6 147 76.9
HanXRQChr05g0163571 Helianthus annuus HOM05D004802 ORTHO05D005591 6.4e-52 207.6 147 76.9
MD14G1184900 Malus domestica HOM05D004802 ORTHO05D005591 6.4e-52 207.6 142 74.6
QL03p066954 Quercus lobata HOM05D004802 ORTHO05D005591 8.3e-52 207.2 143 74.1
TPR.G20968 Trifolium pratense HOM05D004802 ORTHO05D005591 1.1e-51 206.8 144 72.9
TPR.G6374 Trifolium pratense HOM05D004802 ORTHO05D005591 1.1e-51 206.8 144 72.9
AUR62025410 Chenopodium quinoa HOM05D004802 ORTHO05D005591 1.4e-51 206.5 144 74.3
AUR62008830 Chenopodium quinoa HOM05D004802 ORTHO05D005591 2.4e-51 205.7 144 73.6
Psat2g170440 Pisum sativum HOM05D004802 ORTHO05D005591 4.1e-51 204.9 144 71.5
Sc12g0005500 Simmondsia chinensis HOM05D004802 ORTHO05D005591 5.4e-51 204.5 144 70.8
Aqoxy3G02494 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 7.0e-51 204.1 145 73.8
SalBow2G1273 Salvia bowleyana HOM05D004802 ORTHO05D005591 7.0e-51 204.1 144 73.6
EL10Ac7g17734 Beta vulgaris HOM05D004802 ORTHO05D005591 9.2e-51 203.8 144 74.3
PSO782G1633 Papaver somniferum HOM05D004802 ORTHO05D005591 9.2e-51 203.8 148 71.6
RcHm_v2.0_Chr7g0179521 Rosa chinensis HOM05D004802 ORTHO05D005591 1.2e-50 203.4 144 72.2
Sc16g0001640 Simmondsia chinensis HOM05D004802 ORTHO05D005591 1.2e-50 203.4 145 73.8
Dinv41117 Davidia involucrata HOM05D001600 ORTHO05D001502 1.6e-50 203.0 131 78.6
Ah.08g213760 Amaranthus hybridus HOM05D004802 ORTHO05D005591 2.7e-50 202.2 144 72.9
HPP92_014441 Vanilla planifolia HOM05D004802 ORTHO05D005591 2.7e-50 202.2 132 75.0
PGSC0003DMG400024483 Solanum tuberosum HOM05D004802 ORTHO05D005591 3.5e-50 201.8 144 72.9
Potri.002G185800 Populus trichocarpa HOM05D004802 ORTHO05D005591 4.6e-50 201.4 147 72.1
Hund18328 Selenicereus undatus HOM05D004802 ORTHO05D005591 6.0e-50 201.1 140 73.6
unitig_27.g24928 Utricularia gibba HOM05D004802 ORTHO05D005591 6.0e-50 201.1 144 71.5
Atru.chr9.2421 Acer truncatum HOM05D004802 ORTHO05D005591 7.8e-50 200.7 154 71.4
CDE01G0824 Ceratophyllum demersum HOM05D004802 ORTHO05D005591 7.8e-50 200.7 145 70.3
ECA246G1319 Erigeron canadensis HOM05D004802 ORTHO05D005591 1.7e-49 199.5 165 64.2
Ciclev10022742m.g Citrus clementina HOM05D004802 ORTHO05D005591 2.3e-49 199.1 145 73.1
Peaxi162Scf00689g00332 Petunia axillaris HOM05D004802 ORTHO05D005591 3.0e-49 198.7 144 72.2
MD06G1178500 Malus domestica HOM05D004802 ORTHO05D005591 5.0e-49 198.0 110 87.3
Manes.15G185900 Manihot esculenta HOM05D004802 ORTHO05D005591 5.0e-49 198.0 144 74.3
Medtr5g015850 Medicago truncatula HOM05D004802 ORTHO05D005591 8.6e-49 197.2 144 72.2
Thecc.03G006700 Theobroma cacao HOM05D004802 ORTHO05D005591 8.6e-49 197.2 144 72.2
Cc00_g03600 Coffea canephora HOM05D004802 ORTHO05D005591 1.1e-48 196.8 147 71.4
Peaxi162Scf00017g02344 Petunia axillaris HOM05D004802 ORTHO05D005591 1.1e-48 196.8 145 72.4
Aqoxy3G01788 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 1.5e-48 196.4 146 69.2
COL.COLO4_24762 Corchorus olitorius HOM05D004802 ORTHO05D005591 3.3e-48 195.3 144 71.5
Oeu026523.1 Olea europaea HOM05D004802 ORTHO05D005591 3.3e-48 195.3 145 71.7
Duzib068G0850 Durio zibethinus HOM05D004802 ORTHO05D005591 4.3e-48 194.9 148 70.3
SEGI_23384 Sequoiadendron giganteum HOM05D004802 ORTHO05D005591 4.3e-48 194.9 145 71.0
arahy.Tifrunner.gnm1.ann1.RYE93B Arachis hypogaea HOM05D004802 ORTHO05D005591 7.3e-48 194.1 170 63.5
Nitab4.5_0001422g0100 Nicotiana tabacum HOM05D004802 ORTHO05D005591 7.3e-48 194.1 110 84.5
Ca_06425_v3 Cicer arietinum L. HOM05D000308 ORTHO05D000194 1.2e-47 193.4 145 69.7
Hma1.2p1_2640F.1_g325880 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 1.6e-47 193.0 116 82.8
MELO3C017111.2 Cucumis melo HOM05D004802 ORTHO05D005591 2.1e-47 192.6 220 52.3
Zm00001eb378540 Zea mays HOM05D004802 ORTHO05D005591 6.2e-47 191.0 143 70.6
Gohir.A12G276300 Gossypium hirsutum HOM05D004802 ORTHO05D005591 4.0e-46 188.3 147 69.4
Gorai.008G297400 Gossypium raimondii HOM05D004802 ORTHO05D005591 4.0e-46 188.3 147 69.4
FAN13G0264 Fragaria x ananassa HOM05D004802 ORTHO05D005591 5.2e-46 188.0 144 69.4
Gohir.D12G276900 Gossypium hirsutum HOM05D004802 ORTHO05D005591 1.5e-45 186.4 147 68.7
Os06g0128500 Oryza sativa ssp. japonica HOM05D004802 ORTHO05D005591 1.5e-45 186.4 143 68.5
FvH4_5g16620 Fragaria vesca HOM05D004802 ORTHO05D005591 2.6e-45 185.7 144 66.0
FAN18G4009 Fragaria x ananassa HOM05D004802 ORTHO05D005591 7.5e-45 184.1 144 65.3
FAN08G2523 Fragaria x ananassa HOM05D004802 ORTHO05D005591 3.7e-44 181.8 142 66.2
Rhsim08G0169000 Rhododendron simsii HOM05D004802 ORTHO05D005591 1.9e-43 179.5 175 58.3
Dinv25814 Davidia involucrata HOM05D004802 ORTHO05D005591 3.2e-43 178.7 142 67.6
FAN04G1836 Fragaria x ananassa HOM05D004802 ORTHO05D005591 5.0e-41 171.4 112 75.0
Nitab4.5_0008768g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 8.6e-41 170.6 205 49.8
ClCG06G016810 Citrullus lanatus HOM05D004802 ORTHO05D005591 1.4e-38 163.3 92 85.9
QL10p013461 Quercus lobata HOM05D004802 ORTHO05D005591 8.9e-38 160.6 95 83.2
Haze_07452 Corylus avellana HOM05D004802 ORTHO05D005591 2.0e-37 159.5 110 74.5
RcHm_v2.0_Chr3g0484411 Rosa chinensis HOM05D004802 ORTHO05D005591 3.4e-37 158.7 90 84.4
QL03p067058 Quercus lobata HOM05D004802 ORTHO05D005591 7.5e-37 157.5 88 86.4
CiPaw.11G030400 Carya illinoinensis HOM05D004802 ORTHO05D005591 9.9e-37 157.1 108 75.0
Cc00_g07690 Coffea canephora HOM05D004802 ORTHO05D005591 4.6e-34 148.3 109 70.6
Pp3c17_20320 Physcomitrium patens HOM05D004802 ORTHO05D005591 4.0e-30 135.2 120 54.2
Nn2g12605 Nelumbo nucifera HOM05D004802 ORTHO05D005591 1.2e-29 133.7 98 67.3
Cc00_g30360 Coffea canephora HOM05D004802 ORTHO05D005591 2.9e-28 129.0 81 77.8
Nitab4.5_0000003g0430 Nicotiana tabacum HOM05D004802 ORTHO05D005591 2.4e-27 125.9 148 52.7
Mapoly0009s0030 Marchantia polymorpha HOM05D004802 ORTHO05D005591 3.2e-27 125.6 108 58.3
CBR_g30055 Chara braunii HOM05D004802 ORTHO05D005591 8.7e-25 117.5 108 56.5
RcHm_v2.0_Chr3g0484341 Rosa chinensis HOM05D004802 ORTHO05D005591 2.8e-23 112.5 63 87.3
Hma1.2p1_0107F.1_g051480 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 9.9e-21 104.0 60 86.7
SHI01132 Sapria himalayana HOM05D004802 ORTHO05D005591 1.3e-20 103.6 89 61.8
AagrBONN_evm.TU.Sc2ySwM_368.3252 Anthoceros agrestis HOM05D004802 ORTHO05D005591 2.9e-20 102.4 74 68.9
SMO228G0088 Selaginella moellendorffii HOM05D004802 ORTHO05D005591 9.3e-19 97.4 86 55.8
A06p04970 Brassica napus HOM05D004802 ORTHO05D005591 4.6e-18 95.1 113 52.2
A06p04960 Brassica napus HOM05D005594 ORTHO05D006403 2.8e-15 85.9 58 84.5
Haze_26898 Corylus avellana HOM05D004802 ORTHO05D005591 1.4e-14 83.6 87 47.1
MCO15G004 Micromonas commoda HOM05D004802 ORTHO05D005591 5.3e-14 81.6 139 38.8
A09p37440 Brassica napus HOM05D004802 ORTHO05D005591 4.9e-12 75.1 49 75.5
Pp3c14_16960 Physcomitrium patens HOM05D004802 ORTHO05D005591 4.2e-11 72.0 63 55.6
CSS0004783 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 1.0e-09 67.4 59 57.6
Haze_07453 Corylus avellana HOM05D004802 ORTHO05D005591 1.1e-08 63.9 46 67.4
BcaC02g11004 Brassica carinata HOM05D004802 ORTHO05D005591 9.6e-08 60.8 43 72.1
C04p22280 Brassica napus HOM05D004802 ORTHO05D020149 9.6e-08 60.8 43 72.1
Cfa024847 Carpinus fangiana HOM05D004802 ORTHO05D005591 2.8e-07 59.3 72 45.8
BolC3t13075H Brassica oleracea HOM05D004802 ORTHO05D005591 1.1e-06 57.4 29 86.2
BcaB02g06631 Brassica carinata HOM05D004802 ORTHO05D005591 1.4e-06 57.0 42 69.0


User provided reference genes

Program Settings