Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g06230 Schrenkiella parvula HOM05D004372 ORTHO05D004331 1.3e-47 192.6 87 100.0
BcaB02g06736 Brassica carinata HOM05D004372 ORTHO05D004331 1.6e-37 159.1 87 85.1
C08p03110 Brassica napus HOM05D004372 ORTHO05D004331 6.6e-36 153.7 94 77.7
BolC8t47109H Brassica oleracea HOM05D004372 ORTHO05D004331 6.6e-36 153.7 94 77.7
BcaB03g13391 Brassica carinata HOM05D004372 ORTHO05D004331 1.5e-35 152.5 86 81.4
A08p35620 Brassica napus HOM05D004372 ORTHO05D004331 4.3e-35 151.0 87 81.6
BraA08t35468Z Brassica rapa HOM05D004372 ORTHO05D004331 4.3e-35 151.0 87 81.6
A10p06030 Brassica napus HOM05D004372 ORTHO05D004331 3.4e-32 141.4 87 77.0
BraA10t42865Z Brassica rapa HOM05D004372 ORTHO05D004331 3.4e-32 141.4 87 77.0
AL1G17680 Arabidopsis lyrata HOM05D004372 ORTHO05D004331 1.3e-31 139.4 81 81.5
BcaC05g24693 Brassica carinata HOM05D004372 ORTHO05D004331 1.3e-31 139.4 87 75.9
C05p05520 Brassica napus HOM05D004372 ORTHO05D004331 1.3e-31 139.4 87 77.0
BolC5t29323H Brassica oleracea HOM05D004372 ORTHO05D004331 1.3e-31 139.4 87 77.0
Carub.0001s0682 Capsella rubella HOM05D004372 ORTHO05D004331 4.3e-27 124.4 66 81.8
THA.LOC109117261 Tarenaya hassleriana HOM05D004372 ORTHO05D004331 3.9e-20 101.3 86 55.8
Aa31LG1G6940 Aethionema arabicum HOM05D004372 ORTHO05D004331 5.1e-20 100.9 68 70.6
Duzib150G1613 Durio zibethinus HOM05D004372 ORTHO05D004331 3.2e-14 81.6 65 60.0
QL01p030934 Quercus lobata HOM05D004372 ORTHO05D004331 6.0e-13 77.4 68 58.8
Cpa.g.sc81.114 Carica papaya HOM05D004372 ORTHO05D004331 7.8e-13 77.0 65 56.9
Thecc.09G318100 Theobroma cacao HOM05D004372 ORTHO05D004331 3.0e-12 75.1 50 64.0
COL.COLO4_18555 Corchorus olitorius HOM05D004372 ORTHO05D004331 6.6e-12 73.9 65 53.8
Ciclev10029728m.g Citrus clementina HOM05D004372 ORTHO05D004331 1.5e-11 72.8 59 55.9
Gohir.A05G094000 Gossypium hirsutum HOM05D004372 ORTHO05D004331 4.3e-11 71.2 61 60.7
Nn2g13398 Nelumbo nucifera HOM05D004372 ORTHO05D004331 4.3e-11 71.2 65 56.9
CDE02G0964 Ceratophyllum demersum HOM05D000511 ORTHO05D000413 9.6e-11 70.1 80 50.0
Os01g0843700 Oryza sativa ssp. japonica HOM05D004372 ORTHO05D004331 9.6e-11 70.1 65 56.9
Nn2g11160 Nelumbo nucifera HOM05D004372 ORTHO05D004331 1.3e-10 69.7 65 55.4
Zm00001eb148250 Zea mays HOM05D004372 ORTHO05D004331 1.3e-10 69.7 65 56.9
Gohir.D05G094500 Gossypium hirsutum HOM05D004372 ORTHO05D004331 2.1e-10 68.9 61 57.4
ClCG10G021220 Citrullus lanatus HOM05D004372 ORTHO05D004331 2.8e-10 68.6 64 56.2
Manes.07G117700 Manihot esculenta HOM05D004372 ORTHO05D004331 2.8e-10 68.6 67 53.7
TAR633G2336 Trochodendron aralioides HOM05D004372 ORTHO05D004331 2.8e-10 68.6 65 50.8
Eucgr.J01238 Eucalyptus grandis HOM05D004372 ORTHO05D004331 4.8e-10 67.8 64 48.4
Manes.10G028900 Manihot esculenta HOM05D004372 ORTHO05D004331 6.2e-10 67.4 67 52.2
Os03g0822400 Oryza sativa ssp. japonica HOM05D004372 ORTHO05D004331 6.2e-10 67.4 81 46.9
TAR636G3128 Trochodendron aralioides HOM05D004372 ORTHO05D004331 6.2e-10 67.4 70 48.6
Gorai.009G097700 Gossypium raimondii HOM05D004372 ORTHO05D004331 1.1e-09 66.6 61 55.7
Haze_20817 Corylus avellana HOM05D004372 ORTHO05D004331 1.4e-09 66.2 62 50.0
HPP92_019243 Vanilla planifolia HOM05D004372 ORTHO05D004331 2.4e-09 65.5 65 49.2
Hma1.2p1_1785F.1_g302220 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 3.1e-09 65.1 76 47.4
AT1G07500 Arabidopsis thaliana HOM05D004372 ORTHO05D004331 4.0e-09 64.7 35 80.0
MD04G1131100 Malus domestica HOM05D004372 ORTHO05D004331 5.3e-09 64.3 64 56.2
CsaV3_3G034820 Cucumis sativus L. HOM05D004372 ORTHO05D004331 6.9e-09 63.9 64 54.7
TAR623G0224 Trochodendron aralioides HOM05D004372 ORTHO05D004331 6.9e-09 63.9 48 60.4
CANSAT11G2039 Cannabis sativa HOM05D004372 ORTHO05D004331 9.0e-09 63.5 64 57.8
MD12G1144200 Malus domestica HOM05D004372 ORTHO05D004331 1.2e-08 63.2 62 54.8
Manes.02G130300 Manihot esculenta HOM05D004372 ORTHO05D004331 1.2e-08 63.2 72 55.6
Manes.09G092400 Manihot esculenta HOM05D004372 ORTHO05D004331 1.2e-08 63.2 59 57.6
Cfa017356 Carpinus fangiana HOM05D004372 ORTHO05D004331 1.5e-08 62.8 62 48.4
Lsat_1_v5_gn_5_169301 Lactuca sativa HOM05D004372 ORTHO05D004331 1.5e-08 62.8 85 44.7
MELO3C003142.2 Cucumis melo HOM05D004372 ORTHO05D004331 2.0e-08 62.4 64 50.0
RcHm_v2.0_Chr3g0466321 Rosa chinensis HOM05D004372 ORTHO05D004331 2.6e-08 62.0 51 58.8
Medtr5g080040 Medicago truncatula HOM05D004372 ORTHO05D004331 3.4e-08 61.6 60 45.0
Phvul.008G231900 Phaseolus vulgaris HOM05D004372 ORTHO05D004331 3.4e-08 61.6 56 53.6
Glyma.02G248800 Glycine max HOM05D004372 ORTHO05D004331 4.4e-08 61.2 51 54.9
Hma1.2p1_0936F.1_g238880 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 4.4e-08 61.2 51 56.9
MBI05_g29695_MAGBIO Magnolia biondii HOM05D000093 ORTHO05D000814 4.4e-08 61.2 58 50.0
Carub.0006s0106 Capsella rubella HOM05D004372 ORTHO05D004331 5.8e-08 60.8 65 49.2
Haze_17088 Corylus avellana HOM05D004372 ORTHO05D004331 5.8e-08 60.8 65 50.8
Sed0010480 Sechium edule HOM05D004372 ORTHO05D004331 5.8e-08 60.8 67 49.3
BolC2t06039H Brassica oleracea HOM05D004372 ORTHO05D004331 7.6e-08 60.5 63 49.2
FvH4_6g13440 Fragaria vesca HOM05D004372 ORTHO05D004331 7.6e-08 60.5 64 51.6
FAN14G0518 Fragaria x ananassa HOM05D004372 ORTHO05D004331 7.6e-08 60.5 64 51.6
BraA02t04711Z Brassica rapa HOM05D004372 ORTHO05D004331 9.9e-08 60.1 64 48.4
PGSC0003DMG400027224 Solanum tuberosum HOM05D004372 ORTHO05D004331 9.9e-08 60.1 68 44.1
FAN02G2532 Fragaria x ananassa HOM05D004372 ORTHO05D004331 1.3e-07 59.7 64 51.6
FAN09G4335 Fragaria x ananassa HOM05D004372 ORTHO05D004331 1.3e-07 59.7 64 51.6
BcaNung06028 Brassica carinata HOM05D004372 ORTHO05D004331 1.7e-07 59.3 63 49.2
C02p00390 Brassica napus HOM05D004372 ORTHO05D004331 1.7e-07 59.3 63 49.2
Lalb_Chr14g0375161 Lupinus albus HOM05D004372 ORTHO05D004331 1.7e-07 59.3 52 61.5
Cpa.g.c34680 Carica papaya HOM05D004372 ORTHO05D004331 2.2e-07 58.9 52 53.8
ClCG07G003460 Citrullus lanatus HOM05D004372 ORTHO05D004331 2.2e-07 58.9 64 50.0
Sed0017148 Sechium edule HOM05D004372 ORTHO05D004331 2.2e-07 58.9 64 50.0
CiPaw.01G289300 Carya illinoinensis HOM05D004372 ORTHO05D004331 2.9e-07 58.5 77 39.0
Lsat_1_v5_gn_8_15240 Lactuca sativa HOM05D004372 ORTHO05D004331 2.9e-07 58.5 77 41.6
Medtr5g080060 Medicago truncatula HOM05D004372 ORTHO05D004331 3.8e-07 58.2 60 43.3
Solyc05g053050.1 Solanum lycopersicum HOM05D004372 ORTHO05D004331 4.9e-07 57.8 74 41.9
CiPaw.13G091200 Carya illinoinensis HOM05D004372 ORTHO05D004331 6.4e-07 57.4 68 47.1
COL.COLO4_15084 Corchorus olitorius HOM05D022458 ORTHO05D025182 6.4e-07 57.4 65 50.8
Lsat_1_v5_gn_2_118420 Lactuca sativa HOM05D004372 ORTHO05D004331 6.4e-07 57.4 65 47.7
CiPaw.15G088800 Carya illinoinensis HOM05D004372 ORTHO05D004331 8.4e-07 57.0 67 46.3
MELO3C023871.2 Cucumis melo HOM05D004372 ORTHO05D004331 8.4e-07 57.0 64 48.4
MBI14_g04662_MAGBIO Magnolia biondii HOM05D004372 ORTHO05D004331 8.4e-07 57.0 55 49.1
Atru.chr3.3970 Acer truncatum HOM05D004372 ORTHO05D004331 1.1e-06 56.6 66 43.9
Cfa001453 Carpinus fangiana HOM05D004372 ORTHO05D004331 1.1e-06 56.6 54 48.1
MD11G1097200 Malus domestica HOM05D004372 ORTHO05D004331 1.1e-06 56.6 63 50.8
Oeu026714.1 Olea europaea HOM05D004372 ORTHO05D004331 1.1e-06 56.6 83 47.0
Phvul.L007143 Phaseolus vulgaris HOM05D016115 ORTHO05D004331 1.1e-06 56.6 53 54.7
Prupe.6G257600 Prunus persica HOM05D004372 ORTHO05D004331 1.1e-06 56.6 64 48.4
LjContig00141g0021725 Lotus japonicus HOM05D004372 ORTHO05D004331 1.4e-06 56.2 51 49.0
CsaV3_4G025140 Cucumis sativus L. HOM05D004372 ORTHO05D004331 1.9e-06 55.8 57 49.1
Gorai.012G104900 Gossypium raimondii HOM05D004372 ORTHO05D004331 1.9e-06 55.8 65 50.8
MD03G1088000 Malus domestica HOM05D004372 ORTHO05D004331 1.9e-06 55.8 68 47.1
Atru.chr12.419 Acer truncatum HOM05D004372 ORTHO05D004331 2.4e-06 55.5 52 48.1
Gohir.A09G154800 Gossypium hirsutum HOM05D004372 ORTHO05D004331 2.4e-06 55.5 52 57.7
HanXRQChr08g0220931 Helianthus annuus HOM05D004372 ORTHO05D004331 2.4e-06 55.5 65 46.2
Gohir.D09G150300 Gossypium hirsutum HOM05D004372 ORTHO05D004331 3.2e-06 55.1 52 57.7
Gorai.006G171600 Gossypium raimondii HOM05D004372 ORTHO05D004331 3.2e-06 55.1 52 57.7
FAN05G2794 Fragaria x ananassa HOM05D004372 ORTHO05D004331 4.2e-06 54.7 64 51.6
Prupe.6G072300 Prunus persica HOM05D004372 ORTHO05D004331 4.2e-06 54.7 60 51.7
MELO3C009251.2 Cucumis melo HOM05D004372 ORTHO05D004331 5.4e-06 54.3 64 48.4
Cc01_g13170 Coffea canephora HOM05D004372 ORTHO05D004331 7.1e-06 53.9 65 43.1
Eucgr.K03114 Eucalyptus grandis HOM05D004372 ORTHO05D004331 7.1e-06 53.9 66 45.5
FAN16G1658 Fragaria x ananassa HOM05D023252 ORTHO05D025479 7.1e-06 53.9 66 50.0
Glyma.14G067700 Glycine max HOM05D004372 ORTHO05D004331 7.1e-06 53.9 51 49.0
Nitab4.5_0001326g0030 Nicotiana tabacum HOM05D004372 ORTHO05D004331 7.1e-06 53.9 52 48.1
Rhsim01G0230700 Rhododendron simsii HOM05D004372 ORTHO05D004331 7.1e-06 53.9 84 42.9
BraA10t45371Z Brassica rapa HOM05D004372 ORTHO05D004331 9.3e-06 53.5 65 46.2
Nitab4.5_0016190g0010 Nicotiana tabacum HOM05D004372 ORTHO05D004331 9.3e-06 53.5 64 42.2
Peaxi162Scf00165g00075 Petunia axillaris HOM05D019299 ORTHO05D025949 9.3e-06 53.5 67 44.8


User provided reference genes

Program Settings