Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g06050 Schrenkiella parvula HOM05D005325 ORTHO05D003507 8.6e-64 246.9 131 100.0
Thhalv10009101m.g Eutrema salsugineum HOM05D005325 ORTHO05D003507 1.7e-56 222.6 131 92.4
BraA09t41987Z Brassica rapa HOM05D005325 ORTHO05D003507 2.5e-55 218.8 132 90.2
BraA10t42849Z Brassica rapa HOM05D005325 ORTHO05D003507 3.6e-54 214.9 130 89.2
A10p05870 Brassica napus HOM05D005325 ORTHO05D003507 6.2e-54 214.2 129 88.4
BcaC07g42009 Brassica carinata HOM05D005325 ORTHO05D003507 1.1e-53 213.4 131 90.1
C08p50660 Brassica napus HOM05D005325 ORTHO05D003507 1.8e-53 212.6 131 89.3
BolC8t52594H Brassica oleracea HOM05D005325 ORTHO05D003507 1.8e-53 212.6 131 89.3
AL1G17450 Arabidopsis lyrata HOM05D005325 ORTHO05D003507 2.6e-52 208.8 131 86.3
BcaC07g42458 Brassica carinata HOM05D005325 ORTHO05D003507 3.4e-52 208.4 130 87.7
BolC5t29309H Brassica oleracea HOM05D005325 ORTHO05D003507 3.4e-52 208.4 130 87.7
AT1G07300 Arabidopsis thaliana HOM05D005325 ORTHO05D003507 6.4e-51 204.1 129 86.0
C05p05370 Brassica napus HOM05D005325 ORTHO05D003507 3.2e-50 201.8 128 85.9
Carub.0001s0660 Capsella rubella HOM05D005325 ORTHO05D003507 8.6e-48 193.7 131 79.4
CARHR007020 Cardamine hirsuta HOM05D005325 ORTHO05D003507 5.6e-47 191.0 129 82.9
Aa31LG5G6840 Aethionema arabicum HOM05D005325 ORTHO05D003507 1.1e-42 176.8 133 73.7
Aa31LG1G6560 Aethionema arabicum HOM05D005325 ORTHO05D003507 2.5e-39 165.6 131 72.5
Carub.0004s1074 Capsella rubella HOM05D005325 ORTHO05D003507 3.6e-38 161.8 132 71.2
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 2.0e-36 156.0 132 69.7
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 2.6e-36 155.6 132 68.9
Sp4g12360 Schrenkiella parvula HOM05D005325 ORTHO05D003507 2.9e-35 152.1 131 67.9
BcaC02g11049 Brassica carinata HOM05D005325 ORTHO05D003507 4.2e-34 148.3 130 66.2
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 4.2e-34 148.3 130 66.2
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 4.6e-33 144.8 130 63.1
BcaB06g28321 Brassica carinata HOM05D005325 ORTHO05D003507 3.9e-32 141.7 132 62.9
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 1.1e-31 140.2 129 62.8
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 1.5e-31 139.8 134 63.4
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 1.5e-31 139.8 134 63.4
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 1.9e-31 139.4 131 64.1
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 4.3e-31 138.3 132 63.6
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 2.8e-30 135.6 129 64.3
BcaB02g10272 Brassica carinata HOM05D005325 ORTHO05D003507 1.4e-29 133.3 114 64.9
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 1.4e-29 133.3 134 61.9
CARHR122980 Cardamine hirsuta HOM05D005325 ORTHO05D003507 4.0e-29 131.7 126 57.9
Ciclev10029412m.g Citrus clementina HOM05D004233 ORTHO05D003507 7.4e-15 84.3 89 56.2
Actinidia25149 Actinidia chinensis HOM05D004233 ORTHO05D003507 1.3e-14 83.6 98 50.0
Cc01_g13980 Coffea canephora HOM05D004233 ORTHO05D003507 6.3e-14 81.3 121 44.6
Rhsim13G0071800 Rhododendron simsii HOM05D004233 ORTHO05D003507 6.3e-14 81.3 129 43.4
Thecc.05G020400 Theobroma cacao HOM05D004233 ORTHO05D003507 9.0e-13 77.4 86 55.8
Duzib150G0257 Durio zibethinus HOM05D004233 ORTHO05D003507 2.0e-12 76.3 132 43.9
Gorai.003G124100 Gossypium raimondii HOM05D004233 ORTHO05D003507 2.6e-12 75.9 96 53.1
Gohir.D03G117700 Gossypium hirsutum HOM05D004233 ORTHO05D003507 3.4e-12 75.5 96 53.1
Gohir.A03G049600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 7.6e-12 74.3 96 52.1
Nn2g13635 Nelumbo nucifera HOM05D004233 ORTHO05D003507 1.7e-11 73.2 86 53.5
TWI79G1354 Tripterygium wilfordii HOM05D004233 ORTHO05D003507 2.2e-11 72.8 94 51.1
Gohir.D05G090600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 3.8e-11 72.0 90 53.3
Gorai.009G093100 Gossypium raimondii HOM05D004233 ORTHO05D003507 3.8e-11 72.0 90 53.3
Nitab4.5_0000102g0150 Nicotiana tabacum HOM05D004233 ORTHO05D003507 5.0e-11 71.6 111 38.7
Gohir.A05G089700 Gossypium hirsutum HOM05D004233 ORTHO05D003507 6.5e-11 71.2 90 53.3
Gorai.001G115000 Gossypium raimondii HOM05D004233 ORTHO05D003507 1.4e-10 70.1 90 52.2
COL.COLO4_14571 Corchorus olitorius HOM05D004233 ORTHO05D003507 2.5e-10 69.3 86 50.0
Haze_24266 Corylus avellana HOM05D004233 ORTHO05D003507 3.2e-10 68.9 90 51.1
QL01p037420 Quercus lobata HOM05D004233 ORTHO05D003507 4.2e-10 68.6 94 50.0
Dinv37074 Davidia involucrata HOM05D004233 ORTHO05D003507 5.5e-10 68.2 86 50.0
Oeu045519.1 Olea europaea HOM05D004233 ORTHO05D003507 5.5e-10 68.2 106 46.2
Gohir.D07G106900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 7.2e-10 67.8 83 54.2
Ciclev10013109m.g Citrus clementina HOM05D004233 ORTHO05D003507 1.6e-09 66.6 86 46.5
TAR623G0525 Trochodendron aralioides HOM05D004233 ORTHO05D003507 1.6e-09 66.6 89 51.7
Gohir.A07G102900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 2.7e-09 65.9 99 46.5
Hma1.2p1_0227F.1_g096330 Hydrangea macrophylla HOM05D004233 ORTHO05D003507 2.7e-09 65.9 132 40.9
Sabra16G0108400 Salix brachista HOM05D004233 ORTHO05D003507 2.7e-09 65.9 86 51.2
Duzib106G0630 Durio zibethinus HOM05D004233 ORTHO05D003507 4.6e-09 65.1 86 47.7
Manes.09G103100 Manihot esculenta HOM05D004233 ORTHO05D003507 1.0e-08 63.9 86 48.8
Potri.001G249500 Populus trichocarpa HOM05D004233 ORTHO05D003507 1.0e-08 63.9 90 51.1
PGSC0003DMG400004152 Solanum tuberosum HOM05D004233 ORTHO05D003507 1.3e-08 63.5 115 36.5
Peaxi162Scf00056g00201 Petunia axillaris HOM05D004233 ORTHO05D003507 1.8e-08 63.2 92 45.7
Gohir.D01G215600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 2.3e-08 62.8 82 50.0
Gorai.002G261800 Gossypium raimondii HOM05D004233 ORTHO05D003507 2.3e-08 62.8 82 50.0
Potri.016G112700 Populus trichocarpa HOM05D004233 ORTHO05D003507 2.3e-08 62.8 130 39.2
Solyc06g006090.1 Solanum lycopersicum HOM05D004233 ORTHO05D003507 2.3e-08 62.8 141 34.8
Nn1g02891 Nelumbo nucifera HOM05D004233 ORTHO05D003507 3.0e-08 62.4 109 45.9
Atru.chr8.2208 Acer truncatum HOM05D004233 ORTHO05D003507 5.1e-08 61.6 87 49.4
CAN.G780.3 Capsicum annuum HOM05D004233 ORTHO05D003507 5.1e-08 61.6 127 37.0
Gohir.A01G225900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 5.1e-08 61.6 82 48.8
Sopen06g002040 Solanum pennellii HOM05D004233 ORTHO05D003507 5.1e-08 61.6 141 34.8
CiPaw.13G080500 Carya illinoinensis HOM05D004233 ORTHO05D003507 6.7e-08 61.2 120 41.7
Potri.006G097700 Populus trichocarpa HOM05D004233 ORTHO05D003507 6.7e-08 61.2 130 36.2
Hma1.2p1_0763F.1_g214800 Hydrangea macrophylla HOM05D004233 ORTHO05D003507 1.1e-07 60.5 88 48.9
Duzib128G0556 Durio zibethinus HOM05D004233 ORTHO05D003507 1.9e-07 59.7 82 47.6
Duzib093G0978 Durio zibethinus HOM05D004233 ORTHO05D003507 3.3e-07 58.9 82 46.3
Glyma.03G078400 Glycine max HOM05D004233 ORTHO05D003507 3.3e-07 58.9 123 37.4
Potri.009G043501 Populus trichocarpa HOM05D004233 ORTHO05D003507 3.3e-07 58.9 99 45.5
Sabra06G0075200 Salix brachista HOM05D004233 ORTHO05D003507 3.3e-07 58.9 105 41.9
Gohir.A09G163800 Gossypium hirsutum HOM05D004233 ORTHO05D003507 4.3e-07 58.5 86 44.2
Gohir.D09G159300 Gossypium hirsutum HOM05D004233 ORTHO05D003507 4.3e-07 58.5 86 44.2
Gorai.006G181000 Gossypium raimondii HOM05D004233 ORTHO05D003507 4.3e-07 58.5 86 44.2
Cfa017246 Carpinus fangiana HOM05D004233 ORTHO05D003507 5.7e-07 58.2 87 42.5
Lsat_1_v5_gn_9_20140 Lactuca sativa HOM05D004233 ORTHO05D003507 5.7e-07 58.2 83 49.4
TAR369G1066 Trochodendron aralioides HOM05D004233 ORTHO05D003507 5.7e-07 58.2 134 39.6
DCAR_007388 Daucus carota HOM05D004233 ORTHO05D003507 7.4e-07 57.8 122 37.7
MBI05_g30571_MAGBIO Magnolia biondii HOM05D004233 ORTHO05D003507 7.4e-07 57.8 122 39.3
QL07p036016 Quercus lobata HOM05D004233 ORTHO05D003507 7.4e-07 57.8 89 46.1
ClCG10G021920 Citrullus lanatus HOM05D004233 ORTHO05D003507 1.6e-06 56.6 130 38.5
Migut.N00891 Erythranthe guttata HOM05D004233 ORTHO05D003507 1.6e-06 56.6 99 41.4
MSTRG.10228 Avicennia marina HOM05D004233 ORTHO05D003507 2.8e-06 55.8 87 43.7
MELO3C009185.2 Cucumis melo HOM05D004233 ORTHO05D003507 2.8e-06 55.8 130 36.9
Psat2g059280 Pisum sativum HOM05D010371 ORTHO05D003507 4.8e-06 55.1 90 42.2
Aqoxy4G02651 Aquilegia oxysepala HOM05D004233 ORTHO05D003507 6.3e-06 54.7 128 34.4
arahy.Tifrunner.gnm1.ann1.0452KN Arachis hypogaea HOM05D010371 ORTHO05D003507 6.3e-06 54.7 90 42.2
Sed0021305 Sechium edule HOM05D004233 ORTHO05D003507 8.2e-06 54.3 130 36.2


User provided reference genes

Program Settings