Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g05830 Schrenkiella parvula HOM05D003314 ORTHO05D004164 8.7e-268 926.4 469 100.0
Thhalv10006901m.g Eutrema salsugineum HOM05D003314 ORTHO05D004164 1.2e-248 862.8 479 92.1
A08p35790 Brassica napus HOM05D003314 ORTHO05D004164 1.3e-242 842.8 480 89.8
BraA08t35486Z Brassica rapa HOM05D003314 ORTHO05D004164 1.3e-242 842.8 480 89.8
C08p02820 Brassica napus HOM05D003314 ORTHO05D004164 1.8e-241 839.0 480 89.6
BolC8t47077H Brassica oleracea HOM05D003314 ORTHO05D004164 1.8e-241 839.0 480 89.6
BcaC07g42027 Brassica carinata HOM05D003314 ORTHO05D004164 1.2e-240 836.3 479 88.7
C08p50810 Brassica napus HOM05D003314 ORTHO05D004164 1.2e-240 836.3 479 88.7
BolC8t52609H Brassica oleracea HOM05D003314 ORTHO05D004164 1.2e-240 836.3 479 88.7
BraA09t42000Z Brassica rapa HOM05D003314 ORTHO05D004164 2.6e-240 835.1 479 88.3
A10p05630 Brassica napus HOM05D003314 ORTHO05D004164 1.7e-239 832.4 479 88.9
BraA10t42824Z Brassica rapa HOM05D003314 ORTHO05D004164 6.5e-239 830.5 479 88.7
BolC5t29289H Brassica oleracea HOM05D003314 ORTHO05D004164 8.8e-236 820.1 479 87.7
C05p05170 Brassica napus HOM05D003314 ORTHO05D004164 2.0e-235 818.9 479 87.5
CARHR006800 Cardamine hirsuta HOM05D003314 ORTHO05D004164 5.0e-231 804.3 479 86.0
Carub.0001s0639 Capsella rubella HOM05D003314 ORTHO05D004164 2.7e-229 798.5 479 86.4
BcaB03g13407 Brassica carinata HOM05D003314 ORTHO05D004164 4.7e-229 797.7 480 86.2
AT1G07110 Arabidopsis thaliana HOM05D003314 ORTHO05D004164 3.4e-227 791.6 479 85.0
AL1G17230 Arabidopsis lyrata HOM05D003314 ORTHO05D004164 4.8e-226 787.7 479 85.2
BcaC05g24676 Brassica carinata HOM05D003314 ORTHO05D004164 3.6e-221 771.5 484 82.9
Aa31LG1G6350 Aethionema arabicum HOM05D003314 ORTHO05D004164 7.8e-216 753.8 479 82.3
THA.LOC104800751 Tarenaya hassleriana HOM05D003314 ORTHO05D004164 6.6e-207 724.2 479 77.7
THA.LOC104815810 Tarenaya hassleriana HOM05D003314 ORTHO05D004164 6.4e-202 707.6 479 75.6
Cpa.g.sc2.427 Carica papaya HOM05D003314 ORTHO05D004164 1.1e-198 696.8 480 74.6
CiPaw.13G074400 Carya illinoinensis HOM05D003314 ORTHO05D004164 1.2e-197 693.3 480 73.8
GSVIVG01024699001 Vitis vinifera HOM05D003314 ORTHO05D004164 2.8e-197 692.2 480 74.4
TWI79G1066 Tripterygium wilfordii HOM05D003314 ORTHO05D004164 1.1e-196 690.3 480 74.6
Cfa011730 Carpinus fangiana HOM05D003314 ORTHO05D004164 6.8e-196 687.6 480 73.3
Nn2g10926 Nelumbo nucifera HOM05D003314 ORTHO05D004164 1.3e-194 683.3 480 72.9
TWI31G0289 Tripterygium wilfordii HOM05D003314 ORTHO05D004164 1.3e-194 683.3 480 74.4
Dinv28665 Davidia involucrata HOM05D003314 ORTHO05D004164 1.2e-192 676.8 481 73.2
Hma1.2p1_1981F.1_g309920 Hydrangea macrophylla HOM05D003314 ORTHO05D004164 1.7e-191 672.9 480 72.5
Eucgr.J01899 Eucalyptus grandis HOM05D003314 ORTHO05D004164 1.1e-190 670.2 480 71.5
Potri.001G279100 Populus trichocarpa HOM05D003314 ORTHO05D004164 1.5e-190 669.8 480 72.9
Potri.009G073800 Populus trichocarpa HOM05D003314 ORTHO05D004164 2.5e-190 669.1 480 72.7
Ciclev10027872m.g Citrus clementina HOM05D003314 ORTHO05D004164 5.6e-190 667.9 480 72.5
COL.COLO4_11092 Corchorus olitorius HOM05D003314 ORTHO05D004164 2.1e-189 666.0 480 72.5
QL01p039122 Quercus lobata HOM05D003314 ORTHO05D004164 2.1e-189 666.0 480 71.9
CSS0049027 Camellia sinensis var. sinensis HOM05D003314 ORTHO05D004164 3.6e-189 665.2 480 71.7
Atru.chr3.4168 Acer truncatum HOM05D003314 ORTHO05D004164 6.2e-189 664.5 480 72.1
TAR623G0703 Trochodendron aralioides HOM05D003314 ORTHO05D004164 6.2e-189 664.5 480 71.7
Thecc.09G352300 Theobroma cacao HOM05D003314 ORTHO05D004164 8.1e-189 664.1 481 71.9
CSS0022626 Camellia sinensis var. sinensis HOM05D003314 ORTHO05D004164 1.5e-187 659.8 480 71.5
TAR636G3324 Trochodendron aralioides HOM05D003314 ORTHO05D004164 2.6e-187 659.1 480 72.3
Dinv09644 Davidia involucrata HOM05D003314 ORTHO05D004164 4.4e-187 658.3 480 71.0
Manes.18G141800 Manihot esculenta HOM05D003314 ORTHO05D004164 4.4e-187 658.3 480 71.5
CSS0023090 Camellia sinensis var. sinensis HOM05D003314 ORTHO05D004164 1.7e-186 656.4 481 71.1
CiPaw.14G057100 Carya illinoinensis HOM05D003314 ORTHO05D004164 2.2e-186 656.0 481 71.3
PSO017G4706 Papaver somniferum HOM05D003314 ORTHO05D004164 2.2e-186 656.0 483 70.6
PSO170G0130 Papaver somniferum HOM05D003314 ORTHO05D004164 3.8e-186 655.2 483 70.6
vmacro02947 Vaccinium macrocarpon HOM05D003314 ORTHO05D004164 8.4e-186 654.1 507 68.6
Cc01_g14510 Coffea canephora HOM05D003314 ORTHO05D004164 3.2e-185 652.1 476 70.8
Haze_24369 Corylus avellana HOM05D003314 ORTHO05D004164 3.2e-185 652.1 550 64.0
Duzib168G0330 Durio zibethinus HOM05D003314 ORTHO05D004164 9.2e-185 650.6 480 70.8
CsaV3_6G016080 Cucumis sativus L. HOM05D003314 ORTHO05D004164 1.2e-184 650.2 479 70.6
PGR119G0996 Punica granatum HOM05D003314 ORTHO05D004164 1.2e-184 650.2 484 71.3
CANSAT54G2389 Cannabis sativa HOM05D003314 ORTHO05D004164 3.5e-184 648.7 481 70.5
Prupe.6G053800 Prunus persica HOM05D003314 ORTHO05D004164 6.0e-184 647.9 474 70.3
ClCG02G019450 Citrullus lanatus HOM05D003314 ORTHO05D004164 7.8e-184 647.5 480 70.6
MSTRG.12679 Avicennia marina HOM05D003314 ORTHO05D004164 3.9e-183 645.2 488 69.5
MSTRG.17878 Avicennia marina HOM05D003314 ORTHO05D004164 3.9e-183 645.2 481 70.1
Rhsim13G0067500 Rhododendron simsii HOM05D003314 ORTHO05D004164 5.1e-183 644.8 491 69.5
Migut.N00780 Erythranthe guttata HOM05D003314 ORTHO05D004164 1.5e-182 643.3 479 70.8
ATR0681G099 Amborella trichopoda HOM05D003314 ORTHO05D004164 4.3e-182 641.7 483 68.9
Aqoxy4G02458 Aquilegia oxysepala HOM05D003314 ORTHO05D004164 1.2e-181 640.2 483 68.5
Lj1A130T38 Lonicera japonica HOM05D003314 ORTHO05D004164 1.2e-181 640.2 490 69.0
Sed0000995 Sechium edule HOM05D003314 ORTHO05D004164 4.7e-181 638.3 481 70.1
arahy.Tifrunner.gnm1.ann1.H173G9 Arachis hypogaea HOM05D003314 ORTHO05D004164 1.2e-179 633.6 480 67.7
arahy.Tifrunner.gnm1.ann1.99UL3I Arachis hypogaea HOM05D003314 ORTHO05D004164 2.0e-179 632.9 488 66.6
PGSC0003DMG400030370 Solanum tuberosum HOM05D003314 ORTHO05D004164 2.6e-179 632.5 480 69.4
Sc21g0000200 Simmondsia chinensis HOM05D003314 ORTHO05D004164 4.4e-179 631.7 482 68.9
RcHm_v2.0_Chr5g0070401 Rosa chinensis HOM05D003314 ORTHO05D004164 9.9e-179 630.6 475 69.5
MELO3C026830.2 Cucumis melo HOM05D003314 ORTHO05D004164 2.2e-178 629.4 517 65.8
MD11G1068800 Malus domestica HOM05D003314 ORTHO05D004164 2.9e-178 629.0 473 69.1
Oeu051518.1 Olea europaea HOM05D003314 ORTHO05D004164 4.9e-178 628.2 480 69.0
FAN21G3397 Fragaria x ananassa HOM05D003314 ORTHO05D004164 8.4e-178 627.5 477 69.4
CAN.G1095.9 Capsicum annuum HOM05D003314 ORTHO05D004164 1.1e-177 627.1 481 68.8
MBI15_g29380_MAGBIO Magnolia biondii HOM05D003314 ORTHO05D004164 1.9e-177 626.3 540 63.3
MD03G1064800 Malus domestica HOM05D003314 ORTHO05D004164 1.9e-177 626.3 476 68.3
FvH4_3g39080 Fragaria vesca HOM05D003314 ORTHO05D004164 2.4e-177 625.9 477 69.6
Lj6g0001244 Lotus japonicus HOM05D003314 ORTHO05D004164 4.2e-177 625.2 479 68.3
Sopen06g033530 Solanum pennellii HOM05D003314 ORTHO05D004164 4.2e-177 625.2 480 69.0
Glyma.18G060600 Glycine max HOM05D003314 ORTHO05D004164 5.4e-177 624.8 481 68.0
Glyma.11G169700 Glycine max HOM05D003314 ORTHO05D004164 7.1e-177 624.4 481 67.8
SalBow2G2371 Salvia bowleyana HOM05D003314 ORTHO05D004164 1.6e-176 623.2 480 68.8
ECA247G1043 Erigeron canadensis HOM05D003314 ORTHO05D004164 2.1e-176 622.9 479 67.2
Solyc06g082150.4 Solanum lycopersicum HOM05D003314 ORTHO05D004164 4.6e-176 621.7 480 68.5
HanXRQChr08g0229151 Helianthus annuus HOM05D003314 ORTHO05D004164 1.7e-175 619.8 479 67.4
Medtr3g464770 Medicago truncatula HOM05D003314 ORTHO05D004164 3.0e-175 619.0 481 68.2
FAN25G2774 Fragaria x ananassa HOM05D003314 ORTHO05D004164 3.9e-175 618.6 492 67.1
Gorai.003G146900 Gossypium raimondii HOM05D003314 ORTHO05D004164 1.6e-173 613.2 483 67.5
TPR.G32920 Trifolium pratense HOM05D003314 ORTHO05D004164 1.6e-173 613.2 480 67.9
Gohir.A03G028500 Gossypium hirsutum HOM05D003314 ORTHO05D004164 2.8e-173 612.5 483 67.5
Gohir.D03G140100 Gossypium hirsutum HOM05D003314 ORTHO05D004164 3.6e-173 612.1 483 67.5
Phvul.006G069900 Phaseolus vulgaris HOM05D003314 ORTHO05D004164 2.4e-172 609.4 481 65.9
VMungo0540G1658 Vigna mungo HOM05D003314 ORTHO05D004164 4.0e-172 608.6 480 66.7
Lalb_Chr15g0083041 Lupinus albus HOM05D003314 ORTHO05D004164 2.0e-171 606.3 478 66.9
Lsat_1_v5_gn_9_19140 Lactuca sativa HOM05D003314 ORTHO05D004164 1.3e-170 603.6 481 66.9
Psat5g157680 Pisum sativum HOM05D003314 ORTHO05D004164 1.6e-168 596.7 481 67.2
EL10Ac9g22391 Beta vulgaris HOM05D003314 ORTHO05D004164 4.6e-168 595.1 480 65.6
Nitab4.5_0000839g0080 Nicotiana tabacum HOM05D003314 ORTHO05D004164 3.0e-167 592.4 480 66.5
Sabra09G0055800 Salix brachista HOM05D003314 ORTHO05D004164 3.3e-166 589.0 598 56.7
CDE12G0129 Ceratophyllum demersum HOM05D003314 ORTHO05D004164 7.4e-166 587.8 505 62.4
Nitab4.5_0000752g0070 Nicotiana tabacum HOM05D003314 ORTHO05D004164 2.8e-165 585.9 497 63.8
SGA_v2.0_scaffold146G36142 Striga asiatica HOM05D003314 ORTHO05D004164 2.8e-165 585.9 486 64.8
Lj2A1086G63 Lonicera japonica HOM05D003314 ORTHO05D004164 3.7e-165 585.5 562 57.5
Duzib150G1198 Durio zibethinus HOM05D003314 ORTHO05D004164 6.9e-164 581.3 462 67.1
Hund08127 Selenicereus undatus HOM05D003314 ORTHO05D004164 1.2e-163 580.5 512 59.8
SGA_v2.0_scaffold120G32908 Striga asiatica HOM05D003314 ORTHO05D004164 2.6e-163 579.3 483 65.8
Nitab4.5_0002352g0010 Nicotiana tabacum HOM05D003314 ORTHO05D004164 1.7e-162 576.6 470 66.4
Peaxi162Scf00540g00022 Petunia axillaris HOM05D003314 ORTHO05D004164 3.8e-162 575.5 480 65.0
LjContig00141g0002673 Lotus japonicus HOM05D003314 ORTHO05D004164 5.5e-161 571.6 481 64.2
HanXRQChr01g0011671 Helianthus annuus HOM05D003314 ORTHO05D004164 1.0e-159 567.4 481 64.7
Lsat_1_v5_gn_5_172641 Lactuca sativa HOM05D003314 ORTHO05D004164 3.9e-159 565.5 479 63.9
Glyma.02G228700 Glycine max HOM05D003314 ORTHO05D004164 1.9e-158 563.1 479 62.4
Glyma.14G195700 Glycine max HOM05D003314 ORTHO05D004164 3.3e-158 562.4 479 62.0
Os05g0164100 Oryza sativa ssp. japonica HOM05D003314 ORTHO05D004164 2.1e-157 559.7 483 62.7
ECA248G0301 Erigeron canadensis HOM05D003314 ORTHO05D004164 2.8e-157 559.3 486 63.0
CDE06G0062 Ceratophyllum demersum HOM05D003314 ORTHO05D004164 2.4e-156 556.2 481 61.5
Zm00001eb282250 Zea mays HOM05D003314 ORTHO05D004164 4.9e-154 548.5 482 62.0
Medtr5g071900 Medicago truncatula HOM05D003314 ORTHO05D004164 1.1e-153 547.4 483 62.1
Phvul.008G259400 Phaseolus vulgaris HOM05D003314 ORTHO05D004164 7.1e-153 544.7 479 61.0
arahy.Tifrunner.gnm1.ann1.UVU1B7 Arachis hypogaea HOM05D003314 ORTHO05D004164 9.3e-153 544.3 475 61.3
Lalb_Chr17g0345221 Lupinus albus HOM05D003314 ORTHO05D004164 1.6e-152 543.5 478 60.7
arahy.Tifrunner.gnm1.ann1.Y0JIV8 Arachis hypogaea HOM05D003314 ORTHO05D004164 6.0e-152 541.6 475 61.5
DCAR_007359 Daucus carota HOM05D003314 ORTHO05D004164 1.3e-151 540.4 481 61.3
Ca_05629_v3 Cicer arietinum L. HOM05D003314 ORTHO05D004164 3.4e-147 525.8 480 61.9
AUR62041217 Chenopodium quinoa HOM05D003314 ORTHO05D004164 1.3e-146 523.9 481 59.3
A09p66600 Brassica napus HOM05D003314 ORTHO05D004164 5.5e-145 518.5 316 85.8
AUR62025049 Chenopodium quinoa HOM05D003314 ORTHO05D004164 1.5e-139 500.4 493 56.6
Psat2g055960 Pisum sativum HOM05D003314 ORTHO05D004164 3.9e-135 485.7 480 56.7
Migut.O00636 Erythranthe guttata HOM05D003314 ORTHO05D004164 1.4e-132 477.2 370 68.9
Ca_14964_v3 Cicer arietinum L. HOM05D003314 ORTHO05D004164 7.0e-132 474.9 455 58.9
Ah.01g002410 Amaranthus hybridus HOM05D003314 ORTHO05D004164 5.0e-130 468.8 510 52.5
Mapoly0056s0097 Marchantia polymorpha HOM05D003314 ORTHO05D004164 4.4e-126 455.7 495 53.7
Actinidia32631 Actinidia chinensis HOM05D003314 ORTHO05D004164 1.7e-125 453.8 370 65.1
Os03g0294200 Oryza sativa ssp. japonica HOM05D003314 ORTHO05D004164 1.1e-113 414.5 471 50.1
Pp3c16_2340 Physcomitrium patens HOM05D003314 ORTHO05D004164 1.4e-111 407.5 492 50.2
HPP92_013781 Vanilla planifolia HOM05D003314 ORTHO05D004164 2.6e-110 403.3 482 49.8
Pp3c25_1530 Physcomitrium patens HOM05D003314 ORTHO05D004164 3.4e-110 402.9 492 50.6
Zm00001eb013550 Zea mays HOM05D003314 ORTHO05D004164 1.3e-106 391.0 392 56.6
Pp3c21_10950 Physcomitrium patens HOM05D003314 ORTHO05D004164 4.4e-102 375.9 489 47.4
Glyma.11G172200 Glycine max HOM05D003314 ORTHO05D004164 2.8e-101 373.2 259 73.0
BcaC07g42443 Brassica carinata HOM05D003314 ORTHO05D004164 1.7e-98 364.0 221 86.9
Pp3c19_20300 Physcomitrium patens HOM05D003314 ORTHO05D004164 2.9e-98 363.2 488 46.5
TPR.G5069 Trifolium pratense HOM05D003314 ORTHO05D004164 1.4e-95 354.4 329 60.5
unitig_60.g25552 Utricularia gibba HOM05D003314 ORTHO05D004164 6.4e-93 345.5 349 56.4
BcaB02g06745 Brassica carinata HOM05D003314 ORTHO05D004164 6.8e-87 325.5 167 92.2
AagrBONN_evm.TU.Sc2ySwM_117.3149 Anthoceros agrestis HOM05D003314 ORTHO05D004164 6.6e-74 282.3 381 46.5
SMO244G0010 Selaginella moellendorffii HOM05D003314 ORTHO05D004164 4.0e-71 273.1 240 60.0
MBI15_g21757_MAGBIO Magnolia biondii HOM05D003314 ORTHO05D004164 8.9e-71 271.9 205 67.8
SMO174G0065 Selaginella moellendorffii HOM05D003314 ORTHO05D004164 1.9e-65 254.2 185 66.5
Hma1.2p1_0223F.1_g094300 Hydrangea macrophylla HOM05D003314 ORTHO05D004164 1.1e-52 211.8 136 78.7
BcaB02g06747 Brassica carinata HOM05D003314 ORTHO05D004164 3.0e-50 203.8 153 68.6
SEGI_30930 Sequoiadendron giganteum HOM05D003314 ORTHO05D004164 6.9e-47 192.6 225 53.8
AT3G30200 Arabidopsis thaliana HOM05D008309 ORTHO05D010308 5.7e-41 172.9 117 79.5
SEGI_31563 Sequoiadendron giganteum HOM05D003314 ORTHO05D004164 2.8e-40 170.6 119 69.7
Medtr8g066450 Medicago truncatula HOM05D003314 ORTHO05D004164 1.1e-39 168.7 127 66.9
BcaB01g02467 Brassica carinata HOM05D003314 ORTHO05D004164 1.8e-39 167.9 117 72.6
TPR.G10945 Trifolium pratense HOM05D003314 ORTHO05D004164 1.2e-38 165.2 112 68.8
PRCOL_00004422 Prasinoderma coloniale HOM05D003314 ORTHO05D004164 1.5e-38 164.9 197 47.2
Dinv07104 Davidia involucrata HOM05D003314 ORTHO05D004164 2.0e-38 164.5 90 85.6
HanXRQChr16g0518361 Helianthus annuus HOM05D003314 ORTHO05D004164 1.7e-37 161.4 193 51.3
SEGI_20353 Sequoiadendron giganteum HOM05D003314 ORTHO05D004164 3.2e-36 157.1 114 66.7
SEGI_41300 Sequoiadendron giganteum HOM05D003314 ORTHO05D015881 7.9e-35 152.5 197 50.3
HPP92_006766 Vanilla planifolia HOM05D003314 ORTHO05D004164 6.7e-34 149.4 136 55.9
Hma1.2p1_1747F.1_g300540 Hydrangea macrophylla HOM05D003314 ORTHO05D004164 1.9e-33 147.9 103 72.8
BcaC07g42444 Brassica carinata HOM05D003314 ORTHO05D039773 9.7e-33 145.6 72 91.7
Cre16.g691888 Chlamydomonas reinhardtii HOM05D003314 ORTHO05D004164 6.5e-29 132.9 176 39.2
Cre16.g652150 Chlamydomonas reinhardtii HOM05D003314 ORTHO05D004164 1.9e-28 131.3 162 42.6
HanXRQChr08g0229081 Helianthus annuus HOM05D003314 ORTHO05D004164 4.6e-27 126.7 122 57.4
Haze_27150 Corylus avellana HOM05D003314 ORTHO05D004164 9.7e-25 119.0 160 41.9
Cfa025454 Carpinus fangiana HOM05D003314 ORTHO05D004164 2.6e-22 110.9 166 39.2
Cfa024020 Carpinus fangiana HOM05D003314 ORTHO05D004164 1.4e-18 98.6 161 37.9
MCO01G554 Micromonas commoda HOM05D003314 ORTHO05D004164 1.1e-17 95.5 170 35.3
PRCOL_00005130 Prasinoderma coloniale HOM05D003314 ORTHO05D004164 5.7e-17 93.2 194 33.0
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 1.7e-13 81.6 263 25.9
SEGI_02687 Sequoiadendron giganteum HOM05D003314 ORTHO05D004164 7.2e-12 76.3 52 65.4
Carub.0001s3494 Capsella rubella HOM05D003314 ORTHO05D114632 5.2e-10 70.1 41 78.0
SEGI_40801 Sequoiadendron giganteum HOM05D003314 ORTHO05D000285 2.2e-08 64.7 154 37.7
unitig_60.g25551 Utricularia gibba HOM05D003314 ORTHO05D004164 4.1e-07 60.5 45 57.8
COL.COLO4_33733 Corchorus olitorius HOM05D003314 ORTHO05D159803 2.7e-06 57.8 31 96.8


User provided reference genes

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