Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g05820 Schrenkiella parvula HOM05D003314 ORTHO05D004164 1.9e-116 422.5 215 100.0
Thhalv10006901m.g Eutrema salsugineum HOM05D003314 ORTHO05D004164 2.2e-104 382.5 231 88.7
BcaB03g13407 Brassica carinata HOM05D003314 ORTHO05D004164 8.2e-104 380.6 231 87.9
A08p35790 Brassica napus HOM05D003314 ORTHO05D004164 8.2e-104 380.6 231 87.9
C08p02820 Brassica napus HOM05D003314 ORTHO05D004164 8.2e-104 380.6 231 87.9
BolC8t47077H Brassica oleracea HOM05D003314 ORTHO05D004164 8.2e-104 380.6 231 87.9
BraA08t35486Z Brassica rapa HOM05D003314 ORTHO05D004164 8.2e-104 380.6 231 87.9
BcaC07g42027 Brassica carinata HOM05D003314 ORTHO05D004164 4.1e-103 378.3 231 87.9
C08p50810 Brassica napus HOM05D003314 ORTHO05D004164 4.1e-103 378.3 231 87.9
BolC8t52609H Brassica oleracea HOM05D003314 ORTHO05D004164 4.1e-103 378.3 231 87.9
C05p05170 Brassica napus HOM05D003314 ORTHO05D004164 6.9e-103 377.5 231 87.4
BolC5t29289H Brassica oleracea HOM05D003314 ORTHO05D004164 6.9e-103 377.5 231 87.4
A09p66600 Brassica napus HOM05D003314 ORTHO05D004164 1.5e-102 376.3 231 87.4
BraA09t42000Z Brassica rapa HOM05D003314 ORTHO05D004164 1.5e-102 376.3 231 87.4
A10p05630 Brassica napus HOM05D003314 ORTHO05D004164 7.7e-102 374.0 231 86.1
Aa31LG1G6350 Aethionema arabicum HOM05D003314 ORTHO05D004164 1.7e-101 372.9 231 87.0
AL1G17230 Arabidopsis lyrata HOM05D003314 ORTHO05D004164 2.9e-101 372.1 231 86.1
Carub.0001s0639 Capsella rubella HOM05D003314 ORTHO05D004164 2.9e-101 372.1 231 86.1
CARHR006800 Cardamine hirsuta HOM05D003314 ORTHO05D004164 5.0e-101 371.3 231 86.1
AT1G07110 Arabidopsis thaliana HOM05D003314 ORTHO05D004164 6.5e-101 370.9 231 85.7
THA.LOC104800751 Tarenaya hassleriana HOM05D003314 ORTHO05D004164 1.9e-100 369.4 231 85.3
THA.LOC104815810 Tarenaya hassleriana HOM05D003314 ORTHO05D004164 7.9e-99 364.0 231 83.5
Manes.18G141800 Manihot esculenta HOM05D003314 ORTHO05D004164 5.1e-98 361.3 231 82.7
Oeu051518.1 Olea europaea HOM05D003314 ORTHO05D004164 8.8e-98 360.5 231 81.8
PGR119G0996 Punica granatum HOM05D003314 ORTHO05D004164 1.5e-97 359.8 231 81.8
Cc01_g14510 Coffea canephora HOM05D003314 ORTHO05D004164 2.0e-97 359.4 229 82.5
SalBow2G2371 Salvia bowleyana HOM05D003314 ORTHO05D004164 2.5e-97 359.0 229 83.0
Atru.chr3.4168 Acer truncatum HOM05D003314 ORTHO05D004164 3.3e-97 358.6 231 81.8
Migut.N00780 Erythranthe guttata HOM05D003314 ORTHO05D004164 3.3e-97 358.6 229 82.1
HanXRQChr01g0011671 Helianthus annuus HOM05D003314 ORTHO05D004164 3.3e-97 358.6 231 81.0
COL.COLO4_11092 Corchorus olitorius HOM05D003314 ORTHO05D004164 4.3e-97 358.2 231 82.3
MD03G1064800 Malus domestica HOM05D003314 ORTHO05D004164 4.3e-97 358.2 229 81.7
TWI31G0289 Tripterygium wilfordii HOM05D003314 ORTHO05D004164 4.3e-97 358.2 229 82.1
Thecc.09G352300 Theobroma cacao HOM05D003314 ORTHO05D004164 5.7e-97 357.8 231 81.8
CSS0022626 Camellia sinensis var. sinensis HOM05D003314 ORTHO05D004164 7.4e-97 357.5 231 81.8
CSS0049027 Camellia sinensis var. sinensis HOM05D003314 ORTHO05D004164 7.4e-97 357.5 231 81.8
Psat5g157680 Pisum sativum HOM05D003314 ORTHO05D004164 7.4e-97 357.5 231 81.4
Potri.009G073800 Populus trichocarpa HOM05D003314 ORTHO05D004164 7.4e-97 357.5 231 81.0
Duzib150G1198 Durio zibethinus HOM05D003314 ORTHO05D004164 9.7e-97 357.1 231 81.8
unitig_60.g25552 Utricularia gibba HOM05D003314 ORTHO05D004164 9.7e-97 357.1 229 80.8
CsaV3_6G016080 Cucumis sativus L. HOM05D003314 ORTHO05D004164 1.3e-96 356.7 231 80.5
CSS0023090 Camellia sinensis var. sinensis HOM05D003314 ORTHO05D004164 1.7e-96 356.3 231 82.3
Hma1.2p1_1981F.1_g309920 Hydrangea macrophylla HOM05D003314 ORTHO05D004164 1.7e-96 356.3 231 81.0
Ciclev10027872m.g Citrus clementina HOM05D003314 ORTHO05D004164 2.2e-96 355.9 231 81.0
Gohir.A03G028500 Gossypium hirsutum HOM05D003314 ORTHO05D004164 2.2e-96 355.9 231 81.4
Gorai.003G146900 Gossypium raimondii HOM05D003314 ORTHO05D004164 2.2e-96 355.9 231 81.4
Peaxi162Scf00540g00022 Petunia axillaris HOM05D003314 ORTHO05D004164 2.2e-96 355.9 229 82.1
Lj6g0001244 Lotus japonicus HOM05D003314 ORTHO05D004164 2.8e-96 355.5 231 81.4
CiPaw.13G074400 Carya illinoinensis HOM05D003314 ORTHO05D004164 3.7e-96 355.1 231 80.5
Prupe.6G053800 Prunus persica HOM05D003314 ORTHO05D004164 3.7e-96 355.1 231 80.5
MSTRG.12679 Avicennia marina HOM05D003314 ORTHO05D004164 4.8e-96 354.8 229 81.7
Gohir.D03G140100 Gossypium hirsutum HOM05D003314 ORTHO05D004164 4.8e-96 354.8 231 81.0
Sopen06g033530 Solanum pennellii HOM05D003314 ORTHO05D004164 4.8e-96 354.8 229 81.7
PGSC0003DMG400030370 Solanum tuberosum HOM05D003314 ORTHO05D004164 4.8e-96 354.8 229 81.7
Lsat_1_v5_gn_5_172641 Lactuca sativa HOM05D003314 ORTHO05D004164 6.3e-96 354.4 231 80.1
Nitab4.5_0000839g0080 Nicotiana tabacum HOM05D003314 ORTHO05D004164 6.3e-96 354.4 229 81.2
Ca_14964_v3 Cicer arietinum L. HOM05D003314 ORTHO05D004164 8.2e-96 354.0 231 80.5
Haze_24369 Corylus avellana HOM05D003314 ORTHO05D004164 8.2e-96 354.0 231 80.1
FvH4_3g39080 Fragaria vesca HOM05D003314 ORTHO05D004164 8.2e-96 354.0 231 80.1
PSO017G4706 Papaver somniferum HOM05D003314 ORTHO05D004164 8.2e-96 354.0 231 80.5
PSO170G0130 Papaver somniferum HOM05D003314 ORTHO05D004164 8.2e-96 354.0 231 80.5
RcHm_v2.0_Chr5g0070401 Rosa chinensis HOM05D003314 ORTHO05D004164 8.2e-96 354.0 231 79.2
Solyc06g082150.4 Solanum lycopersicum HOM05D003314 ORTHO05D004164 8.2e-96 354.0 229 81.7
arahy.Tifrunner.gnm1.ann1.H173G9 Arachis hypogaea HOM05D003314 ORTHO05D004164 1.4e-95 353.2 232 80.6
Eucgr.J01899 Eucalyptus grandis HOM05D003314 ORTHO05D004164 1.4e-95 353.2 231 80.5
Medtr3g464770 Medicago truncatula HOM05D003314 ORTHO05D004164 1.4e-95 353.2 231 81.0
QL01p039122 Quercus lobata HOM05D003314 ORTHO05D004164 1.4e-95 353.2 230 80.0
TAR636G3324 Trochodendron aralioides HOM05D003314 ORTHO05D004164 1.4e-95 353.2 231 81.0
Potri.001G279100 Populus trichocarpa HOM05D003314 ORTHO05D004164 1.8e-95 352.8 231 80.5
Nitab4.5_0002352g0010 Nicotiana tabacum HOM05D003314 ORTHO05D004164 2.4e-95 352.4 228 81.1
FAN25G2774 Fragaria x ananassa HOM05D003314 ORTHO05D004164 3.1e-95 352.1 231 79.7
Aqoxy4G02458 Aquilegia oxysepala HOM05D003314 ORTHO05D004164 4.1e-95 351.7 231 80.1
Cfa011730 Carpinus fangiana HOM05D003314 ORTHO05D004164 4.1e-95 351.7 231 79.7
Glyma.18G060600 Glycine max HOM05D003314 ORTHO05D004164 4.1e-95 351.7 231 80.5
Sed0000995 Sechium edule HOM05D003314 ORTHO05D004164 4.1e-95 351.7 231 79.2
SGA_v2.0_scaffold120G32908 Striga asiatica HOM05D003314 ORTHO05D004164 4.1e-95 351.7 255 74.9
TPR.G32920 Trifolium pratense HOM05D003314 ORTHO05D004164 4.1e-95 351.7 231 80.5
MSTRG.17878 Avicennia marina HOM05D003314 ORTHO05D004164 5.3e-95 351.3 228 81.6
Nn2g10926 Nelumbo nucifera HOM05D003314 ORTHO05D004164 5.3e-95 351.3 232 80.6
Nitab4.5_0000752g0070 Nicotiana tabacum HOM05D003314 ORTHO05D004164 5.3e-95 351.3 228 80.7
Os05g0164100 Oryza sativa ssp. japonica HOM05D003314 ORTHO05D004164 5.3e-95 351.3 231 79.2
CAN.G1095.9 Capsicum annuum HOM05D003314 ORTHO05D004164 6.9e-95 350.9 229 80.8
Lsat_1_v5_gn_9_19140 Lactuca sativa HOM05D003314 ORTHO05D004164 6.9e-95 350.9 231 79.7
CANSAT54G2389 Cannabis sativa HOM05D003314 ORTHO05D004164 1.2e-94 350.1 231 80.1
SGA_v2.0_scaffold146G36142 Striga asiatica HOM05D003314 ORTHO05D004164 1.5e-94 349.7 252 76.2
TWI79G1066 Tripterygium wilfordii HOM05D003314 ORTHO05D004164 1.5e-94 349.7 229 80.8
TAR623G0703 Trochodendron aralioides HOM05D003314 ORTHO05D004164 1.5e-94 349.7 231 79.7
HanXRQChr08g0229151 Helianthus annuus HOM05D003314 ORTHO05D004164 2.6e-94 349.0 231 79.2
VMungo0540G1658 Vigna mungo HOM05D003314 ORTHO05D004164 2.6e-94 349.0 231 79.7
CDE06G0062 Ceratophyllum demersum HOM05D003314 ORTHO05D004164 3.4e-94 348.6 231 79.7
HPP92_013781 Vanilla planifolia HOM05D003314 ORTHO05D004164 3.4e-94 348.6 231 79.7
Glyma.11G169700 Glycine max HOM05D003314 ORTHO05D004164 4.5e-94 348.2 231 79.7
GSVIVG01024699001 Vitis vinifera HOM05D003314 ORTHO05D004164 4.5e-94 348.2 231 79.7
Zm00001eb282250 Zea mays HOM05D003314 ORTHO05D004164 4.5e-94 348.2 231 78.8
Phvul.006G069900 Phaseolus vulgaris HOM05D003314 ORTHO05D004164 7.7e-94 347.4 231 79.7
Lalb_Chr15g0083041 Lupinus albus HOM05D003314 ORTHO05D004164 1.7e-93 346.3 231 78.8
EL10Ac9g22391 Beta vulgaris HOM05D003314 ORTHO05D004164 2.2e-93 345.9 231 78.4
ECA247G1043 Erigeron canadensis HOM05D003314 ORTHO05D004164 2.2e-93 345.9 231 77.9
arahy.Tifrunner.gnm1.ann1.99UL3I Arachis hypogaea HOM05D003314 ORTHO05D004164 5.0e-93 344.7 239 77.4
ECA248G0301 Erigeron canadensis HOM05D003314 ORTHO05D004164 6.5e-93 344.4 231 77.9
Ca_05629_v3 Cicer arietinum L. HOM05D003314 ORTHO05D004164 3.2e-92 342.0 231 77.9
CiPaw.14G057100 Carya illinoinensis HOM05D003314 ORTHO05D004164 7.2e-92 340.9 231 78.4
Zm00001eb013550 Zea mays HOM05D003314 ORTHO05D004164 9.4e-92 340.5 230 76.5
Dinv09644 Davidia involucrata HOM05D003314 ORTHO05D004164 2.1e-91 339.3 220 81.4
Medtr5g071900 Medicago truncatula HOM05D003314 ORTHO05D004164 2.1e-91 339.3 231 76.2
LjContig00141g0002673 Lotus japonicus HOM05D003314 ORTHO05D004164 2.7e-91 339.0 231 76.2
Phvul.008G259400 Phaseolus vulgaris HOM05D003314 ORTHO05D004164 7.9e-91 337.4 231 77.1
MELO3C026830.2 Cucumis melo HOM05D003314 ORTHO05D004164 1.0e-90 337.0 220 79.5
Os03g0294200 Oryza sativa ssp. japonica HOM05D003314 ORTHO05D004164 1.4e-90 336.7 230 75.7
Psat2g055960 Pisum sativum HOM05D003314 ORTHO05D004164 1.4e-90 336.7 231 75.8
ATR0681G099 Amborella trichopoda HOM05D003314 ORTHO05D004164 3.0e-90 335.5 224 78.6
Glyma.02G228700 Glycine max HOM05D003314 ORTHO05D004164 5.1e-90 334.7 231 77.1
Glyma.14G195700 Glycine max HOM05D003314 ORTHO05D004164 5.1e-90 334.7 231 77.1
Mapoly0056s0097 Marchantia polymorpha HOM05D003314 ORTHO05D004164 8.8e-90 334.0 231 74.9
Lalb_Chr17g0345221 Lupinus albus HOM05D003314 ORTHO05D004164 2.6e-89 332.4 231 75.8
AagrBONN_evm.TU.Sc2ySwM_117.3149 Anthoceros agrestis HOM05D003314 ORTHO05D004164 3.3e-89 332.0 230 75.7
arahy.Tifrunner.gnm1.ann1.UVU1B7 Arachis hypogaea HOM05D003314 ORTHO05D004164 3.3e-89 332.0 231 74.9
MBI15_g29380_MAGBIO Magnolia biondii HOM05D003314 ORTHO05D004164 4.4e-89 331.6 274 68.6
arahy.Tifrunner.gnm1.ann1.Y0JIV8 Arachis hypogaea HOM05D003314 ORTHO05D004164 5.7e-89 331.3 231 74.0
vmacro02947 Vaccinium macrocarpon HOM05D003314 ORTHO05D004164 8.2e-88 327.4 248 73.0
Lj2A1086T64 Lonicera japonica HOM05D003314 ORTHO05D004164 2.4e-87 325.9 226 77.0
Pp3c16_2340 Physcomitrium patens HOM05D003314 ORTHO05D004164 4.5e-86 321.6 230 73.5
AUR62041217 Chenopodium quinoa HOM05D003314 ORTHO05D004164 5.9e-86 321.2 272 67.3
BcaC05g24676 Brassica carinata HOM05D003314 ORTHO05D004164 1.0e-85 320.5 215 80.0
DCAR_007359 Daucus carota HOM05D003314 ORTHO05D004164 1.7e-85 319.7 215 77.2
Pp3c25_1530 Physcomitrium patens HOM05D003314 ORTHO05D004164 5.0e-85 318.2 230 72.2
ClCG02G019450 Citrullus lanatus HOM05D003314 ORTHO05D004164 4.2e-84 315.1 220 76.8
Pp3c21_10950 Physcomitrium patens HOM05D003314 ORTHO05D004164 1.6e-83 313.2 230 70.0
SMO174G0065 Selaginella moellendorffii HOM05D003314 ORTHO05D004164 1.6e-83 313.2 229 71.2
Lj1A130T38 Lonicera japonica HOM05D003314 ORTHO05D004164 8.0e-83 310.8 255 69.0
BraA10t42824Z Brassica rapa HOM05D003314 ORTHO05D004164 8.8e-82 307.4 268 67.5
FAN21G3397 Fragaria x ananassa HOM05D003314 ORTHO05D004164 1.1e-81 307.0 345 53.6
Duzib168G0330 Durio zibethinus HOM05D003314 ORTHO05D004164 1.5e-81 306.6 208 78.8
Sabra09G0055800 Salix brachista HOM05D003314 ORTHO05D004164 2.6e-81 305.8 231 71.9
Pp3c19_20300 Physcomitrium patens HOM05D003314 ORTHO05D004164 3.3e-81 305.4 231 68.0
SMO244G0010 Selaginella moellendorffii HOM05D003314 ORTHO05D004164 3.3e-81 305.4 230 69.6
Rhsim13G0067500 Rhododendron simsii HOM05D003314 ORTHO05D004164 2.9e-77 292.4 254 66.1
TPR.G5069 Trifolium pratense HOM05D003314 ORTHO05D004164 7.2e-76 287.7 265 61.9
Actinidia32630 Actinidia chinensis HOM05D003314 ORTHO05D004164 2.1e-75 286.2 232 69.4
AUR62025049 Chenopodium quinoa HOM05D003314 ORTHO05D004164 2.4e-71 272.7 215 70.2
Dinv28665 Davidia involucrata HOM05D003314 ORTHO05D004164 5.9e-70 268.1 183 77.6
MD11G1068700 Malus domestica HOM05D003314 ORTHO05D004164 1.7e-61 240.0 170 76.5
TAR636G0028 Trochodendron aralioides HOM05D003314 ORTHO05D002223 5.0e-61 238.4 169 76.9
CDE12G0377 Ceratophyllum demersum HOM05D003314 ORTHO05D004164 1.9e-60 236.5 172 75.0
Ah.01g002410 Amaranthus hybridus HOM05D003314 ORTHO05D004164 1.8e-58 229.9 231 59.3
Sc21g0000200 Simmondsia chinensis HOM05D003314 ORTHO05D004164 8.3e-48 194.5 140 73.6
Cpa.g.sc2.427 Carica papaya HOM05D003314 ORTHO05D004164 1.1e-47 194.1 108 87.0
Glyma.11G172200 Glycine max HOM05D003314 ORTHO05D004164 8.6e-45 184.5 109 84.4
Cpa.g.sc2.426 Carica papaya HOM05D003314 ORTHO05D004164 1.2e-43 180.6 95 95.8
PRCOL_00005130 Prasinoderma coloniale HOM05D003314 ORTHO05D004164 5.2e-42 175.3 227 40.5
Cre16.g691888 Chlamydomonas reinhardtii HOM05D003314 ORTHO05D004164 1.5e-41 173.7 261 42.5
PRCOL_00004422 Prasinoderma coloniale HOM05D003314 ORTHO05D004164 9.8e-41 171.0 337 34.7
Cfa025454 Carpinus fangiana HOM05D003314 ORTHO05D004164 1.7e-40 170.2 218 39.9
SEGI_28657 Sequoiadendron giganteum HOM05D003314 ORTHO05D004164 4.1e-39 165.6 92 87.0
Cre16.g652150 Chlamydomonas reinhardtii HOM05D003314 ORTHO05D004164 1.2e-38 164.1 272 40.1
SEGI_19911 Sequoiadendron giganteum HOM05D003314 ORTHO05D004164 1.1e-36 157.5 127 68.5
Haze_27150 Corylus avellana HOM05D003314 ORTHO05D004164 1.6e-35 153.7 205 42.0
MCO01G554 Micromonas commoda HOM05D003314 ORTHO05D004164 4.7e-35 152.1 219 41.6
Hund08127 Selenicereus undatus HOM05D003314 ORTHO05D004164 2.6e-33 146.4 108 71.3
Gohir.A07G160200 Gossypium hirsutum HOM05D003314 ORTHO05D004164 8.4e-32 141.4 80 86.2
SEGI_24147 Sequoiadendron giganteum HOM05D003314 ORTHO05D026139 5.1e-29 132.1 79 79.7
MCO04G290 Micromonas commoda HOM05D003314 ORTHO05D004164 2.4e-26 123.2 228 34.2
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 6.9e-26 121.7 272 32.7
MD11G1068800 Malus domestica HOM05D003314 ORTHO05D004164 9.9e-25 117.9 59 93.2
Dinv07104 Davidia involucrata HOM05D003314 ORTHO05D004164 1.3e-24 117.5 62 88.7
CDE12G0129 Ceratophyllum demersum HOM05D003314 ORTHO05D004164 1.7e-21 107.1 56 91.1
Cfa024020 Carpinus fangiana HOM05D003314 ORTHO05D004164 6.6e-21 105.1 226 31.4
Dinv25276 Davidia involucrata HOM05D000557 ORTHO05D019084 8.1e-19 98.2 53 83.0
Glyma.06G028800 Glycine max HOM05D003314 ORTHO05D035932 3.6e-11 72.8 71 57.7
Glyma.17G189950 Glycine max HOM05D003314 ORTHO05D035932 3.6e-11 72.8 71 57.7
PSO302G0047 Papaver somniferum HOM05D003314 ORTHO05D004164 4.8e-11 72.4 57 71.9
HanXRQChr10g0315241 Helianthus annuus HOM05D003314 ORTHO05D004164 3.4e-09 66.2 38 84.2
HanXRQChr13g0399511 Helianthus annuus HOM05D006254 ORTHO05D007409 1.7e-08 63.9 47 63.8
MD03G1179800 Malus domestica HOM05D003314 ORTHO05D019084 4.2e-07 59.3 40 70.0
Gohir.A10G178966 Gossypium hirsutum HOM05D003314 ORTHO05D004164 5.5e-07 58.9 30 90.0
HanXRQChr05g0144901 Helianthus annuus HOM05D003314 ORTHO05D222853 1.6e-06 57.4 62 50.0


User provided reference genes

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