Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g05780 Schrenkiella parvula HOM05D007204 ORTHO05D008593 6.8e-134 480.7 253 100.0
A10p05600 Brassica napus HOM05D007204 ORTHO05D008593 6.2e-111 404.4 247 87.0
C05p05140 Brassica napus HOM05D007204 ORTHO05D008593 2.4e-110 402.5 253 85.0
BcaC05g24670 Brassica carinata HOM05D007204 ORTHO05D008593 3.1e-110 402.1 253 84.6
AL1G17180 Arabidopsis lyrata HOM05D007204 ORTHO05D008593 3.4e-109 398.7 253 84.2
BcaNung06767 Brassica carinata HOM05D007204 ORTHO05D008593 4.9e-108 394.8 250 83.6
BraA10t42821Z Brassica rapa HOM05D007204 ORTHO05D008593 4.2e-107 391.7 271 79.7
AT1G07060 Arabidopsis thaliana HOM05D007204 ORTHO05D008593 5.5e-107 391.3 252 82.9
CARHR006750 Cardamine hirsuta HOM05D007204 ORTHO05D008593 1.6e-106 389.8 253 81.8
BolC5t29286H Brassica oleracea HOM05D007204 ORTHO05D008593 3.9e-105 385.2 277 76.5
BcaNung06763 Brassica carinata HOM05D007204 ORTHO05D008593 1.6e-103 379.8 274 76.3
Carub.0001s0635 Capsella rubella HOM05D007204 ORTHO05D008593 3.7e-103 378.6 248 81.0
Thhalv10009490m.g Eutrema salsugineum HOM05D007204 ORTHO05D008593 5.3e-94 348.2 216 86.1
Aa31LG1G8110 Aethionema arabicum HOM05D007204 ORTHO05D008593 9.0e-94 347.4 246 76.4
BcaC05g24674 Brassica carinata HOM05D007204 ORTHO05D008593 6.3e-79 298.1 198 80.8
THA.LOC104800761 Tarenaya hassleriana HOM05D007204 ORTHO05D008593 7.9e-74 281.2 249 64.7
TWI31G1133 Tripterygium wilfordii HOM05D007204 ORTHO05D008593 1.3e-52 210.7 240 48.8
Duzib168G0028 Durio zibethinus HOM05D007204 ORTHO05D008593 2.1e-50 203.4 249 45.4
COL.COLO4_11129 Corchorus olitorius HOM05D007204 ORTHO05D008593 4.4e-48 195.7 250 45.6
Atru.chr3.4133 Acer truncatum HOM05D007204 ORTHO05D008593 1.4e-46 190.7 239 45.2
GSVIVG01024663001 Vitis vinifera HOM05D007204 ORTHO05D008593 3.1e-46 189.5 233 46.8
Thecc.09G355900 Theobroma cacao HOM05D007204 ORTHO05D008593 4.1e-46 189.1 234 47.4
QL01p040026 Quercus lobata HOM05D007204 ORTHO05D008593 7.0e-46 188.3 233 48.1
FAN16G2350 Fragaria x ananassa HOM05D007204 ORTHO05D008593 4.5e-45 185.7 241 44.0
FvH4_3g39530 Fragaria vesca HOM05D007204 ORTHO05D008593 1.0e-44 184.5 241 44.4
RcHm_v2.0_Chr5g0071301 Rosa chinensis HOM05D007204 ORTHO05D008593 2.9e-44 183.0 241 44.0
Gohir.D03G142400 Gossypium hirsutum HOM05D007204 ORTHO05D008593 6.6e-44 181.8 236 43.6
FAN25G1877 Fragaria x ananassa HOM05D007204 ORTHO05D008593 8.6e-44 181.4 241 43.6
Prupe.6G050500 Prunus persica HOM05D007204 ORTHO05D008593 8.6e-44 181.4 250 43.6
CiPaw.14G055100 Carya illinoinensis HOM05D007204 ORTHO05D008593 1.1e-43 181.0 234 45.3
Dinv09663 Davidia involucrata HOM05D007204 ORTHO05D008593 3.3e-43 179.5 237 43.5
Gorai.003G149500 Gossypium raimondii HOM05D007204 ORTHO05D008593 3.3e-43 179.5 232 44.4
MD11G1063300 Malus domestica HOM05D007204 ORTHO05D008593 1.6e-42 177.2 236 46.6
Actinidia32616 Actinidia chinensis HOM05D007204 ORTHO05D008593 1.4e-41 174.1 248 42.7
Ciclev10029273m.g Citrus clementina HOM05D007204 ORTHO05D008593 1.8e-41 173.7 208 45.7
PSO801G0770 Papaver somniferum HOM05D007204 ORTHO05D008593 1.8e-41 173.7 237 43.0
PGR102G0940 Punica granatum HOM05D007204 ORTHO05D008593 5.2e-41 172.2 238 42.0
Nn2g10986 Nelumbo nucifera HOM05D007204 ORTHO05D008593 6.8e-41 171.8 235 43.4
HanXRQChr08g0229231 Helianthus annuus HOM05D007204 ORTHO05D008593 6.4e-39 165.2 234 44.4
Phvul.006G073000 Phaseolus vulgaris HOM05D007204 ORTHO05D008593 6.4e-39 165.2 240 42.5
Potri.001G281500 Populus trichocarpa HOM05D007204 ORTHO05D008593 1.1e-38 164.5 231 43.7
FAN11G3207 Fragaria x ananassa HOM05D007204 ORTHO05D008593 1.4e-38 164.1 210 45.2
VMungo0540G1924 Vigna mungo HOM05D007204 ORTHO05D008593 1.4e-38 164.1 221 43.4
MELO3C026086.2 Cucumis melo HOM05D007204 ORTHO05D008593 5.4e-38 162.2 228 43.4
Eucgr.B03990 Eucalyptus grandis HOM05D007204 ORTHO05D008593 5.4e-38 162.2 239 41.4
Manes.17G034600 Manihot esculenta HOM05D007204 ORTHO05D008593 7.0e-38 161.8 221 43.0
TAR623G0341 Trochodendron aralioides HOM05D007204 ORTHO05D008593 7.0e-38 161.8 187 49.2
PSO339G1295 Papaver somniferum HOM05D007204 ORTHO05D008593 9.2e-38 161.4 235 39.6
Nitab4.5_0007880g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 1.2e-37 161.0 243 40.3
Sed0020276 Sechium edule HOM05D007204 ORTHO05D008593 2.0e-37 160.2 236 39.4
Cfa011760 Carpinus fangiana HOM05D007204 ORTHO05D008593 5.0e-36 155.6 201 47.8
Cc01_g14730 Coffea canephora HOM05D007204 ORTHO05D008593 6.6e-36 155.2 226 42.5
Lj6g0005890 Lotus japonicus HOM05D007204 ORTHO05D008593 8.6e-36 154.8 231 42.0
Psat5g153840 Pisum sativum HOM05D007204 ORTHO05D008593 8.6e-36 154.8 250 42.0
AUR62009682 Chenopodium quinoa HOM05D007204 ORTHO05D008593 1.1e-35 154.5 225 41.3
TPR.G32886 Trifolium pratense HOM05D007204 ORTHO05D008593 1.5e-35 154.1 237 42.2
Migut.N00766 Erythranthe guttata HOM05D007204 ORTHO05D008593 1.9e-35 153.7 230 41.3
CsaV3_1G015330 Cucumis sativus L. HOM05D007204 ORTHO05D008593 4.3e-35 152.5 241 39.8
Lsat_1_v5_gn_9_18401 Lactuca sativa HOM05D007204 ORTHO05D008593 9.5e-35 151.4 240 41.2
Rhsim13G0065200 Rhododendron simsii HOM05D007204 ORTHO05D008593 9.5e-35 151.4 314 35.4
PGSC0003DMG400030457 Solanum tuberosum HOM05D007204 ORTHO05D008593 2.1e-34 150.2 237 41.4
SGA_v2.0_scaffold146G36125 Striga asiatica HOM05D007204 ORTHO05D008593 3.6e-34 149.4 236 39.0
FAN21G2638 Fragaria x ananassa HOM05D007204 ORTHO05D008593 8.0e-34 148.3 188 45.2
Sc21g0005220 Simmondsia chinensis HOM05D007204 ORTHO05D008593 1.8e-33 147.1 228 40.4
Hma1.2p1_0841F.1_g226930 Hydrangea macrophylla HOM05D007204 ORTHO05D008593 3.1e-33 146.4 166 50.6
arahy.Tifrunner.gnm1.ann1.QCA2Y7 Arachis hypogaea HOM05D007204 ORTHO05D008593 1.5e-32 144.1 249 38.2
arahy.Tifrunner.gnm1.ann1.IVNQ32 Arachis hypogaea HOM05D007204 ORTHO05D008593 2.0e-32 143.7 258 36.4
DCAR_012274 Daucus carota HOM05D007204 ORTHO05D008593 3.4e-32 142.9 179 46.4
CANSAT54G2573 Cannabis sativa HOM05D007204 ORTHO05D008593 5.8e-32 142.1 183 46.4
Gohir.A03G026100 Gossypium hirsutum HOM05D007204 ORTHO05D008593 5.8e-32 142.1 190 43.7
MBI03_g33621_MAGBIO Magnolia biondii HOM05D007204 ORTHO05D008593 1.3e-31 141.0 291 34.4
Peaxi162Scf00390g00079 Petunia axillaris HOM05D007204 ORTHO05D008593 2.9e-31 139.8 243 38.7
MSTRG.9779 Avicennia marina HOM05D007204 ORTHO05D008593 3.2e-30 136.3 234 37.2
ClCG03G000270 Citrullus lanatus HOM05D007204 ORTHO05D008593 3.2e-30 136.3 252 36.1
Aqoxy2G00798 Aquilegia oxysepala HOM05D007204 ORTHO05D008593 4.1e-30 136.0 175 45.7
AUR62001886 Chenopodium quinoa HOM05D007204 ORTHO05D008593 9.2e-30 134.8 267 35.2
HPP92_019711 Vanilla planifolia HOM05D000883 ORTHO05D002942 9.2e-30 134.8 244 38.1
Zm00001eb195020 Zea mays HOM05D007204 ORTHO05D008593 9.2e-30 134.8 240 38.3
ECA247G3086 Erigeron canadensis HOM05D007204 ORTHO05D008593 5.6e-27 125.6 343 31.5
Os12g0106100 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 9.5e-27 124.8 228 38.2
Os11g0106800 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 2.8e-26 123.2 232 37.9
Medtr3g031680 Medicago truncatula HOM05D007204 ORTHO05D008593 6.2e-26 122.1 184 41.8
Medtr3g031720 Medicago truncatula HOM05D007204 ORTHO05D008593 6.2e-26 122.1 182 43.4
Lj2A1091T48 Lonicera japonica HOM05D007204 ORTHO05D008593 6.8e-25 118.6 118 53.4
Nitab4.5_0009741g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 8.9e-25 118.2 292 31.8
Glyma.18G058101 Glycine max HOM05D007204 ORTHO05D008593 2.6e-24 116.7 133 46.6
Oeu034090.2 Olea europaea HOM05D007204 ORTHO05D008593 7.5e-24 115.2 239 34.7
Lalb_Chr15g0083171 Lupinus albus HOM05D007204 ORTHO05D008593 1.7e-23 114.0 134 45.5
Hund18956 Selenicereus undatus HOM05D007204 ORTHO05D008593 1.1e-22 111.3 174 39.7
SalBow2G2431 Salvia bowleyana HOM05D007204 ORTHO05D008593 2.4e-22 110.2 183 37.7
unitig_94.g28350 Utricularia gibba HOM05D007204 ORTHO05D008593 2.1e-21 107.1 217 33.6
Solyc06g082320.4 Solanum lycopersicum HOM05D007204 ORTHO05D008593 1.0e-20 104.8 132 47.0
SGA_v2.0_scaffold120G32948 Striga asiatica HOM05D007204 ORTHO05D008593 1.0e-20 104.8 326 29.4
Sabra16G0175100 Salix brachista HOM05D007204 ORTHO05D008593 5.2e-17 92.4 229 34.1
SEGI_02179 Sequoiadendron giganteum HOM05D056589 ORTHO05D008593 2.1e-13 80.5 227 30.0
ATR0174G030 Amborella trichopoda HOM05D007204 ORTHO05D008593 1.0e-12 78.2 177 30.5
vmacro02927 Vaccinium macrocarpon HOM05D007204 ORTHO05D008593 1.0e-12 78.2 201 29.4
CSS0017241 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 6.6e-12 75.5 133 36.1
CSS0041349 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 1.9e-11 73.9 133 35.3
Sopen06g033710 Solanum pennellii HOM05D007204 ORTHO05D008593 3.3e-11 73.2 140 37.9


User provided reference genes

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