Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 0.0e+00 1896.7 1016 100.0
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1796.6 1016 93.7
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1792.7 1016 93.6
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1787.3 1016 93.3
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 0.0e+00 1786.5 1016 93.6
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1770.7 1016 93.1
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 0.0e+00 1768.4 1017 92.3
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 0.0e+00 1761.5 1017 91.7
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 0.0e+00 1760.7 1017 91.8
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 0.0e+00 1754.2 1011 92.6
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 0.0e+00 1753.4 1017 91.4
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 0.0e+00 1753.0 1011 92.5
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1744.2 1063 89.0
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 0.0e+00 1728.4 1049 88.8
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 0.0e+00 1544.6 1040 81.0
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 0.0e+00 1389.8 1018 72.5
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 0.0e+00 1360.5 1019 70.3
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 0.0e+00 1349.7 1025 69.1
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1343.9 1024 69.3
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1343.6 1017 68.8
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 0.0e+00 1342.4 1017 68.7
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1341.6 1026 69.1
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 0.0e+00 1340.9 1022 69.3
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1339.7 1017 68.8
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 0.0e+00 1336.2 1018 69.6
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 0.0e+00 1335.5 1018 69.0
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 0.0e+00 1332.8 1036 69.1
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 0.0e+00 1322.8 1020 68.1
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1320.4 1023 68.5
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 0.0e+00 1312.7 1020 68.3
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1308.9 1026 67.7
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 0.0e+00 1304.3 988 68.5
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1303.9 1028 68.1
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1300.8 1016 67.7
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 0.0e+00 1300.8 1051 66.8
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 0.0e+00 1300.4 1019 67.9
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 0.0e+00 1298.9 1026 68.3
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1297.7 1036 67.7
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1296.6 1025 67.4
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 0.0e+00 1295.8 1016 68.7
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 0.0e+00 1291.6 1017 68.2
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1291.2 1017 67.9
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 0.0e+00 1288.9 1020 67.5
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1286.6 1005 67.4
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1281.5 1019 66.6
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1280.4 1028 66.5
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1280.4 1063 65.2
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 0.0e+00 1277.7 967 69.0
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1277.3 1029 66.4
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1276.2 1022 66.4
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 0.0e+00 1275.4 1025 67.4
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 0.0e+00 1275.0 1025 66.8
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1274.6 1011 66.7
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1270.8 1004 66.7
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1270.4 1024 66.7
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1261.1 992 66.9
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 0.0e+00 1259.2 1016 66.3
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 0.0e+00 1258.4 1029 66.8
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 0.0e+00 1252.7 1025 65.7
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 0.0e+00 1252.7 1029 64.9
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1251.5 1015 66.7
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 0.0e+00 1251.1 1017 65.3
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1248.0 1006 65.6
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 0.0e+00 1247.6 1031 65.6
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 0.0e+00 1242.6 1018 65.1
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 0.0e+00 1240.3 1087 62.0
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1239.9 1005 65.7
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1237.2 1054 64.2
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 0.0e+00 1235.3 981 66.6
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1234.9 1019 64.3
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 0.0e+00 1234.2 1016 63.5
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1229.9 977 65.6
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1229.5 1004 64.4
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 0.0e+00 1226.1 1026 64.8
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1220.7 1014 65.3
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 0.0e+00 1219.1 1024 64.3
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 0.0e+00 1212.2 1017 64.2
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1210.7 937 66.7
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 0.0e+00 1209.5 1024 63.6
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1206.8 942 66.3
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1206.4 1013 64.4
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1205.7 994 63.8
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 0.0e+00 1204.9 1035 63.0
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1203.3 1020 63.7
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 0.0e+00 1192.9 944 65.4
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 0.0e+00 1192.6 1036 62.1
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1187.9 1016 63.2
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 0.0e+00 1178.3 1019 62.2
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1177.9 1023 62.5
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 0.0e+00 1174.5 1017 62.1
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1168.3 1026 61.8
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1167.1 988 63.1
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 0.0e+00 1161.0 898 69.0
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 0.0e+00 1144.8 1021 60.4
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 0.0e+00 1137.9 795 75.0
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1136.7 1038 60.6
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 0.0e+00 1136.3 1002 60.3
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 0.0e+00 1131.7 948 62.7
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 0.0e+00 1131.7 851 69.2
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 0.0e+00 1117.4 1023 59.8
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 0.0e+00 1116.3 1033 59.1
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 0.0e+00 1079.7 1077 56.1
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 1.0e-310 1070.1 789 71.2
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 1.1e-304 1050.0 1019 56.0
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 1.6e-303 1046.2 786 70.2
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 4.0e-302 1041.6 1029 56.6
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 4.5e-285 984.9 563 92.7
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 4.5e-285 984.9 1011 53.5
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 1.6e-279 966.5 977 51.7
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 1.2e-277 960.3 967 52.7
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 1.9e-275 953.0 703 70.3
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 7.9e-274 947.6 989 51.2
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 3.7e-271 938.7 1016 58.4
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 1.5e-264 916.8 835 58.6
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 2.0e-261 906.4 945 52.3
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 1.6e-245 853.6 742 61.9
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 8.0e-234 814.7 651 66.2
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 1.2e-224 784.3 985 45.6
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 2.7e-205 719.9 613 61.0
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 6.0e-205 718.8 972 47.5
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 3.3e-203 713.0 619 60.9
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 3.0e-196 689.9 691 53.4
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 2.0e-192 677.2 596 58.2
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 7.1e-190 668.7 404 88.4
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 4.3e-179 632.9 633 53.9
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 4.8e-170 602.8 543 58.0
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 4.3e-163 579.7 562 56.0
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 1.4e-150 538.1 614 47.9
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 1.3e-135 488.4 1061 32.4
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 3.6e-133 480.3 578 51.2
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 1.2e-128 465.3 1003 30.6
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 3.2e-113 414.1 346 64.5
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 7.3e-110 402.9 919 30.0
QL05p055919 Quercus lobata HOM05D003801 ORTHO05D004812 6.2e-109 399.8 384 60.9
Oeu050040.1 Olea europaea HOM05D003801 ORTHO05D004812 1.7e-106 391.7 285 71.6
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 2.1e-104 384.8 220 91.8
Dinv12256 Davidia involucrata HOM05D003801 ORTHO05D004812 1.6e-96 358.6 278 70.5
HPP92_014542 Vanilla planifolia HOM05D003801 ORTHO05D004812 1.3e-95 355.5 359 53.2
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 8.9e-92 342.8 565 41.1
Os10g0492300 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 3.8e-90 337.4 425 42.6
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 4.9e-90 337.0 265 66.0
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 4.6e-88 330.5 556 39.4
MBI15_g33038_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 9.6e-86 322.8 291 57.4
MBI07_g35968_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 6.2e-85 320.1 295 58.0
QL05p056751 Quercus lobata HOM05D003801 ORTHO05D004812 8.1e-85 319.7 279 65.9
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 6.9e-84 316.6 575 40.3
BolC1t01884H Brassica oleracea HOM05D003801 ORTHO05D017532 2.9e-82 311.2 423 53.0
C01p22580 Brassica napus HOM05D003801 ORTHO05D017532 3.0e-79 301.2 416 53.4
Hma1.2p1_0613F.1_g189200 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.4e-73 282.3 301 57.1
Lj6A615T90 Lonicera japonica HOM05D003801 ORTHO05D004812 1.3e-69 269.2 407 41.5
arahy.Tifrunner.gnm1.ann1.WCY7KD Arachis hypogaea HOM05D003801 ORTHO05D004812 3.4e-67 261.2 191 73.8
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 1.4e-65 255.8 244 53.3
Sabra19G0124600 Salix brachista HOM05D003801 ORTHO05D004812 1.0e-63 249.6 263 54.4
Hma1.2p1_1586F.1_g292110 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 4.8e-61 240.7 244 60.7
CDE07G0490 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 6.9e-60 236.9 592 31.8
Actinidia23184 Actinidia chinensis HOM05D003801 ORTHO05D004812 2.3e-55 221.9 302 43.0
CDE07G0188 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 2.4e-52 211.8 227 55.1
PSO339G0950 Papaver somniferum HOM05D003801 ORTHO05D004812 4.1e-52 211.1 219 48.9
SHI19239 Sapria himalayana HOM05D003801 ORTHO05D004812 9.0e-52 209.9 289 41.9
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 1.5e-51 209.1 331 45.0
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 4.5e-51 207.6 408 43.4
Cc01_g14940 Coffea canephora HOM05D003801 ORTHO05D004812 4.3e-46 191.0 156 69.9
CDE07G0464 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 7.4e-46 190.3 166 64.5
Cc01_g14920 Coffea canephora HOM05D003801 ORTHO05D004812 1.8e-44 185.7 203 51.7
C05p05050 Brassica napus HOM05D003801 ORTHO05D004812 4.1e-44 184.5 92 97.8
CANSAT80G1859 Cannabis sativa HOM05D003801 ORTHO05D004812 1.7e-42 179.1 135 66.7
VMungo1215G2313 Vigna mungo HOM05D003801 ORTHO05D004812 2.0e-35 155.6 231 40.3
BolC1t02191H Brassica oleracea HOM05D003801 ORTHO05D017532 8.5e-34 150.2 174 58.0
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 3.2e-33 148.3 155 54.8
CSS0035288 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 9.4e-33 146.7 124 59.7
Glyma.11G162400 Glycine max HOM05D003801 ORTHO05D004812 1.6e-32 146.0 140 57.9
AL1G16970 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.5e-30 139.4 75 93.3
AL1G17100 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.5e-30 139.4 75 93.3
Hma1.2p1_1586F.1_g292120 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 5.7e-30 137.5 175 47.4
SEGI_21560 Sequoiadendron giganteum HOM05D003801 ORTHO05D010437 1.6e-24 119.4 166 43.4
COL.COLO4_07614 Corchorus olitorius HOM05D003801 ORTHO05D004812 3.4e-22 111.7 167 41.9
SHI19242 Sapria himalayana HOM05D003801 ORTHO05D004812 1.4e-20 106.3 119 50.4
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 3.1e-20 105.1 74 64.9
TAR629G1141 Trochodendron aralioides HOM05D000566 ORTHO05D000686 2.1e-16 92.4 72 63.9
Os10g0492101 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 3.6e-16 91.7 108 46.3
C01p10430 Brassica napus HOM05D003801 ORTHO05D017532 2.5e-09 68.9 35 94.3
VMungo1215G2515 Vigna mungo HOM05D003801 ORTHO05D436020 8.9e-07 60.5 59 55.9


User provided reference genes

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