Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g05650 Schrenkiella parvula HOM05D010829 ORTHO05D001770 4.5e-81 304.7 170 100.0
Thhalv10008904m.g Eutrema salsugineum HOM05D010829 ORTHO05D001770 2.9e-51 205.7 182 70.3
AL1G16960 Arabidopsis lyrata HOM05D010829 ORTHO05D001770 1.7e-48 196.4 178 71.3
AT1G06930 Arabidopsis thaliana HOM05D010829 ORTHO05D001770 4.3e-47 191.8 177 68.4
A10p05470 Brassica napus HOM05D010829 ORTHO05D001770 2.4e-42 176.0 178 67.4
BraA10t42810Z Brassica rapa HOM05D010829 ORTHO05D001770 2.4e-42 176.0 178 67.4
BcaC05g24659 Brassica carinata HOM05D010829 ORTHO05D001770 1.0e-40 170.6 178 64.6
C05p05040 Brassica napus HOM05D010829 ORTHO05D001770 1.0e-40 170.6 178 64.6
BolC5t29276H Brassica oleracea HOM05D010829 ORTHO05D001770 1.0e-40 170.6 178 64.6
BcaB02g06768 Brassica carinata HOM05D010829 ORTHO05D001770 6.2e-38 161.4 177 66.7
BraA09t42006Z Brassica rapa HOM05D010829 ORTHO05D001770 1.3e-35 153.7 173 59.0
A09p66660 Brassica napus HOM05D010829 ORTHO05D001770 4.6e-33 145.2 173 59.0
CARHR006610 Cardamine hirsuta HOM05D010829 ORTHO05D001770 1.0e-32 144.1 176 59.1
Carub.0001s0623 Capsella rubella HOM05D010829 ORTHO05D001770 8.6e-32 141.0 187 59.4
BcaC07g42035 Brassica carinata HOM05D010829 ORTHO05D001770 4.3e-31 138.7 166 53.0
C08p50890 Brassica napus HOM05D010829 ORTHO05D001770 3.6e-30 135.6 159 60.4
BolC8t52617H Brassica oleracea HOM05D010829 ORTHO05D001770 3.6e-30 135.6 159 60.4
Aa31LG1G7990 Aethionema arabicum HOM05D010829 ORTHO05D001770 4.0e-29 132.1 170 51.2
THA.LOC104800781 Tarenaya hassleriana HOM05D010829 ORTHO05D001770 2.9e-27 125.9 189 52.9
FAN11G2787 Fragaria x ananassa HOM05D002277 ORTHO05D001770 8.4e-11 71.2 179 40.8
FAN16G0709 Fragaria x ananassa HOM05D002277 ORTHO05D001770 8.4e-11 71.2 179 40.8
RcHm_v2.0_Chr5g0072421 Rosa chinensis HOM05D002277 ORTHO05D001770 1.9e-10 70.1 182 39.6
Thecc.09G361400 Theobroma cacao HOM05D002277 ORTHO05D001770 3.2e-10 69.3 172 39.5
CiPaw.13G065900 Carya illinoinensis HOM05D002277 ORTHO05D001770 7.1e-10 68.2 183 37.2
Potri.013G156100 Populus trichocarpa HOM05D002277 ORTHO05D001770 7.1e-10 68.2 191 34.0
Cpa.g.sc2.326 Carica papaya HOM05D002277 ORTHO05D001770 1.2e-09 67.4 196 34.2
Glyma.02G234700 Glycine max HOM05D002277 ORTHO05D001770 1.6e-09 67.0 194 36.6
TAR623G1362 Trochodendron aralioides HOM05D002277 ORTHO05D001770 1.6e-09 67.0 82 51.2
Sabra13G0126000 Salix brachista HOM05D002277 ORTHO05D001770 2.7e-09 66.2 192 34.4
Cfa011806 Carpinus fangiana HOM05D002277 ORTHO05D001770 4.6e-09 65.5 69 49.3
Potri.019G127400 Populus trichocarpa HOM05D002277 ORTHO05D001770 6.0e-09 65.1 181 33.7
Prupe.6G043800 Prunus persica HOM05D002277 ORTHO05D001770 1.0e-08 64.3 175 37.1
COL.COLO4_11188 Corchorus olitorius HOM05D002277 ORTHO05D001770 1.3e-08 63.9 88 45.5
Ciclev10033390m.g Citrus clementina HOM05D002277 ORTHO05D001770 3.0e-08 62.8 65 53.8
MELO3C019998.2 Cucumis melo HOM05D002277 ORTHO05D001770 3.0e-08 62.8 79 44.3
Actinidia34486 Actinidia chinensis HOM05D002277 ORTHO05D001770 5.1e-08 62.0 167 29.3
Haze_24445 Corylus avellana HOM05D002277 ORTHO05D001770 5.1e-08 62.0 69 47.8
FAN25G3585 Fragaria x ananassa HOM05D002277 ORTHO05D001770 5.1e-08 62.0 88 44.3
Sabra13G0072000 Salix brachista HOM05D002277 ORTHO05D001770 5.1e-08 62.0 81 46.9
Hma1.2p1_2270F.1_g318540 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 6.7e-08 61.6 173 37.6
Nn2g13334 Nelumbo nucifera HOM05D002277 ORTHO05D001770 6.7e-08 61.6 66 51.5
Potri.013G083101 Populus trichocarpa HOM05D002277 ORTHO05D001770 6.7e-08 61.6 82 46.3
QL08p064469 Quercus lobata HOM05D002277 ORTHO05D001770 6.7e-08 61.6 80 45.0
LjContig00141g0024890 Lotus japonicus HOM05D002277 ORTHO05D001770 1.1e-07 60.8 64 50.0
Phvul.008G249000 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 1.1e-07 60.8 183 39.3
CsaV3_6G002200 Cucumis sativus L. HOM05D002277 ORTHO05D001770 1.5e-07 60.5 49 53.1
ECA248G3276 Erigeron canadensis HOM05D002277 ORTHO05D001770 1.5e-07 60.5 84 41.7
Gohir.A03G023900 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.5e-07 60.5 189 33.9
Thecc.04G155300 Theobroma cacao HOM05D002277 ORTHO05D001770 1.5e-07 60.5 64 50.0
Duzib268G1048 Durio zibethinus HOM05D002277 ORTHO05D001770 1.9e-07 60.1 71 47.9
FAN21G1843 Fragaria x ananassa HOM05D002277 ORTHO05D001770 1.9e-07 60.1 86 47.7
Hma1.2p1_1052F.1_g252370 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 1.9e-07 60.1 81 43.2
Cfa001229 Carpinus fangiana HOM05D002277 ORTHO05D001770 2.5e-07 59.7 99 41.4
ClCG11G005770 Citrullus lanatus HOM05D002277 ORTHO05D001770 2.5e-07 59.7 79 41.8
Rhsim03G0150300 Rhododendron simsii HOM05D002277 ORTHO05D001770 2.5e-07 59.7 55 60.0
Sabra13G0071200 Salix brachista HOM05D002277 ORTHO05D001770 2.5e-07 59.7 81 45.7
Sabra19G0125500 Salix brachista HOM05D002277 ORTHO05D001770 2.5e-07 59.7 74 43.2
Sabra19G0129800 Salix brachista HOM05D002277 ORTHO05D001770 2.5e-07 59.7 74 43.2
TAR636G1485 Trochodendron aralioides HOM05D002277 ORTHO05D001770 2.5e-07 59.7 73 45.2
Gohir.D13G005350 Gossypium hirsutum HOM05D002277 ORTHO05D001770 3.3e-07 59.3 45 62.2
Gorai.003G151900 Gossypium raimondii HOM05D002277 ORTHO05D001770 3.3e-07 59.3 123 40.7
Gorai.005G006100 Gossypium raimondii HOM05D002277 ORTHO05D001770 3.3e-07 59.3 64 45.3
Gorai.013G006000 Gossypium raimondii HOM05D002277 ORTHO05D001770 3.3e-07 59.3 45 62.2
Oeu033238.1 Olea europaea HOM05D002277 ORTHO05D001770 3.3e-07 59.3 80 45.0
TAR633G2754 Trochodendron aralioides HOM05D002277 ORTHO05D001770 3.3e-07 59.3 73 45.2
Cc02_g05610 Coffea canephora HOM05D002277 ORTHO05D001770 4.3e-07 58.9 78 42.3
Duzib128G0618 Durio zibethinus HOM05D002277 ORTHO05D001770 4.3e-07 58.9 84 44.0
Lsat_1_v5_gn_5_175260 Lactuca sativa HOM05D002277 ORTHO05D001770 4.3e-07 58.9 59 47.5
Oeu027170.1 Olea europaea HOM05D002277 ORTHO05D001770 4.3e-07 58.9 170 35.3
Oeu058656.1 Olea europaea HOM05D002277 ORTHO05D001770 4.3e-07 58.9 71 43.7
FAN02G0282 Fragaria x ananassa HOM05D002277 ORTHO05D001770 5.6e-07 58.5 67 49.3
Lj2C62G11 Lonicera japonica HOM05D002277 ORTHO05D001770 7.4e-07 58.2 63 46.0
Potri.006G107200 Populus trichocarpa HOM05D002277 ORTHO05D001770 7.4e-07 58.2 80 42.5
Sed0026001 Sechium edule HOM05D002277 ORTHO05D001770 7.4e-07 58.2 85 41.2
TAR629G0672 Trochodendron aralioides HOM05D002277 ORTHO05D001770 7.4e-07 58.2 73 43.8
MSTRG.27280 Avicennia marina HOM05D002277 ORTHO05D001770 9.6e-07 57.8 127 33.9
Gohir.D03G144700 Gossypium hirsutum HOM05D002277 ORTHO05D001770 9.6e-07 57.8 123 39.8
VMungo0647G0912 Vigna mungo HOM05D002277 ORTHO05D001770 9.6e-07 57.8 61 49.2
Atru.chr12.148 Acer truncatum HOM05D002277 ORTHO05D001770 1.3e-06 57.4 59 50.8
CiPaw.14G052400 Carya illinoinensis HOM05D002277 ORTHO05D001770 1.3e-06 57.4 184 35.9
Duzib212G0079 Durio zibethinus HOM05D002277 ORTHO05D001770 1.3e-06 57.4 85 43.5
Gohir.D10G117600 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.3e-06 57.4 71 46.5
Gorai.011G129500 Gossypium raimondii HOM05D002277 ORTHO05D001770 1.3e-06 57.4 71 46.5
Manes.07G138400 Manihot esculenta HOM05D002277 ORTHO05D001770 1.3e-06 57.4 62 46.8
Sc11g0005700 Simmondsia chinensis HOM05D002277 ORTHO05D001770 1.3e-06 57.4 67 46.3
Thecc.10G174900 Theobroma cacao HOM05D002277 ORTHO05D001770 1.3e-06 57.4 81 45.7
Ciclev10002474m.g Citrus clementina HOM05D002277 ORTHO05D001770 1.6e-06 57.0 73 42.5
Gohir.A10G149200 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.6e-06 57.0 72 45.8
Phvul.001G249100 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 1.6e-06 57.0 71 46.5
Rhsim01G0241900 Rhododendron simsii HOM05D002277 ORTHO05D001770 1.6e-06 57.0 158 32.3
CANSAT54G0878 Cannabis sativa HOM05D002277 ORTHO05D001770 2.1e-06 56.6 48 54.2
CiPaw.01G304400 Carya illinoinensis HOM05D002277 ORTHO05D001770 2.1e-06 56.6 81 43.2
COL.COLO4_03891 Corchorus olitorius HOM05D002277 ORTHO05D001770 2.1e-06 56.6 68 51.5
COL.COLO4_30002 Corchorus olitorius HOM05D002277 ORTHO05D001770 2.1e-06 56.6 52 53.8
FvH4_6g10240 Fragaria vesca HOM05D002277 ORTHO05D001770 2.1e-06 56.6 67 49.3
FAN14G3640 Fragaria x ananassa HOM05D002277 ORTHO05D001770 2.1e-06 56.6 67 49.3
Gohir.D04G013500 Gossypium hirsutum HOM05D002277 ORTHO05D001770 2.1e-06 56.6 84 41.7
Gorai.012G015800 Gossypium raimondii HOM05D002277 ORTHO05D001770 2.1e-06 56.6 84 41.7
Solyc06g050370.1 Solanum lycopersicum HOM05D002277 ORTHO05D001770 2.1e-06 56.6 73 49.3
Actinidia33883 Actinidia chinensis HOM05D002277 ORTHO05D001770 2.8e-06 56.2 59 55.9
ATR0681G220 Amborella trichopoda HOM05D002277 ORTHO05D001770 2.8e-06 56.2 59 52.5
CDE12G0812 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 2.8e-06 56.2 47 53.2
Lsat_1_v5_gn_5_148320 Lactuca sativa HOM05D002277 ORTHO05D001770 2.8e-06 56.2 59 44.1
QL07p032796 Quercus lobata HOM05D002277 ORTHO05D001770 2.8e-06 56.2 125 36.0
EL10Ac7g17051 Beta vulgaris HOM05D002277 ORTHO05D001770 3.7e-06 55.8 75 44.0
CSS0032322 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 3.7e-06 55.8 61 50.8
MELO3C020502.2 Cucumis melo HOM05D002277 ORTHO05D001770 3.7e-06 55.8 104 39.4
Hma1.2p1_1240F.1_g269550 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 3.7e-06 55.8 45 62.2
Oeu011363.1 Olea europaea HOM05D002277 ORTHO05D001770 3.7e-06 55.8 167 32.3
Phvul.008G218400 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 3.7e-06 55.8 61 52.5
QL01p025249 Quercus lobata HOM05D002277 ORTHO05D001770 3.7e-06 55.8 171 36.3
CDE04G2385 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 4.8e-06 55.5 47 53.2
Gohir.A02G005000 Gossypium hirsutum HOM05D002277 ORTHO05D001770 4.8e-06 55.5 54 51.9
Gohir.A05G402100 Gossypium hirsutum HOM05D002277 ORTHO05D001770 4.8e-06 55.5 84 41.7
Gohir.A13G005650 Gossypium hirsutum HOM05D002277 ORTHO05D001770 4.8e-06 55.5 45 60.0
Peaxi162Scf00464g00005 Petunia axillaris HOM05D002277 ORTHO05D001770 4.8e-06 55.5 86 44.2
Prupe.2G261100 Prunus persica HOM05D002277 ORTHO05D001770 4.8e-06 55.5 75 40.0
Sabra06G0083400 Salix brachista HOM05D002277 ORTHO05D001770 4.8e-06 55.5 64 46.9
VMungo0647G0196 Vigna mungo HOM05D002277 ORTHO05D001770 4.8e-06 55.5 180 36.7
CSS0043215 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 6.2e-06 55.1 59 47.5
CiPaw.09G218200 Carya illinoinensis HOM05D002277 ORTHO05D001770 6.2e-06 55.1 64 42.2
Glyma.14G053500 Glycine max HOM05D002277 ORTHO05D001770 6.2e-06 55.1 61 49.2
Manes.09G115500 Manihot esculenta HOM05D002277 ORTHO05D001770 6.2e-06 55.1 74 44.6
Potri.016G133200 Populus trichocarpa HOM05D002277 ORTHO05D001770 6.2e-06 55.1 72 44.4
HPP92_011988 Vanilla planifolia HOM05D002277 ORTHO05D001770 6.2e-06 55.1 82 40.2
MSTRG.18959 Avicennia marina HOM05D002277 ORTHO05D001770 8.1e-06 54.7 161 30.4
MELO3C026052.2 Cucumis melo HOM05D002277 ORTHO05D001770 8.1e-06 54.7 46 58.7
Eucgr.J00136 Eucalyptus grandis HOM05D002277 ORTHO05D001770 8.1e-06 54.7 78 44.9
PSO339G6062 Papaver somniferum HOM05D002277 ORTHO05D001770 8.1e-06 54.7 46 56.5
Sopen06g015870 Solanum pennellii HOM05D002277 ORTHO05D001770 8.1e-06 54.7 71 49.3


User provided reference genes

Program Settings