Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 1.3e-257 892.5 436 100.0
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 4.1e-227 791.2 436 86.9
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 2.9e-225 785.0 436 87.6
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 1.0e-222 776.5 437 87.0
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 3.0e-222 775.0 437 85.1
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 2.0e-218 762.3 436 84.4
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 2.0e-218 762.3 441 83.7
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 2.0e-218 762.3 441 83.7
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 2.0e-218 762.3 436 84.4
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 5.9e-218 760.8 436 84.4
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 8.8e-206 720.3 451 78.3
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 8.6e-185 650.6 442 75.3
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 8.6e-185 650.6 442 75.3
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 8.6e-185 650.6 442 75.3
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 3.3e-184 648.7 440 71.4
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 5.2e-174 614.8 440 65.9
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 5.4e-171 604.7 444 64.9
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 3.5e-170 602.1 445 70.3
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 6.0e-170 601.3 444 64.9
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 1.1e-163 580.5 443 62.5
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 6.0e-162 574.7 442 63.3
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 7.8e-162 574.3 444 60.1
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 1.0e-161 573.9 444 61.7
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 3.0e-161 572.4 441 62.4
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 8.7e-161 570.9 444 60.1
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 1.9e-160 569.7 444 61.7
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 2.5e-160 569.3 444 61.5
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 5.6e-160 568.2 443 61.9
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 5.6e-160 568.2 444 59.9
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 2.8e-159 565.8 443 61.9
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 3.6e-159 565.5 446 60.3
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 8.1e-159 564.3 472 60.2
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 1.1e-158 563.9 446 61.7
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 4.0e-158 562.0 441 62.4
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 4.0e-158 562.0 444 62.2
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 4.0e-158 562.0 447 62.4
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 5.3e-158 561.6 442 60.9
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 6.9e-158 561.2 445 60.4
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 9.0e-158 560.8 441 62.4
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 3.4e-157 558.9 445 59.8
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 4.4e-157 558.5 441 62.1
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 4.4e-157 558.5 444 60.8
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 7.6e-157 557.8 442 60.9
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 1.7e-156 556.6 445 60.0
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 2.2e-156 556.2 427 62.8
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 2.9e-156 555.8 444 61.9
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 3.8e-156 555.4 446 59.9
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 6.4e-156 554.7 444 60.1
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 1.9e-155 553.1 444 59.7
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 2.4e-155 552.7 440 60.9
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 3.2e-155 552.4 442 60.0
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 3.2e-155 552.4 444 59.9
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 9.3e-155 550.8 444 57.9
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 1.6e-154 550.1 444 58.6
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 7.8e-154 547.7 439 60.1
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 1.3e-153 547.0 444 57.4
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 3.0e-153 545.8 456 58.1
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 3.9e-153 545.4 444 60.4
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 8.7e-153 544.3 445 58.9
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 8.7e-153 544.3 489 56.2
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 2.5e-152 542.7 445 58.4
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 4.8e-151 538.5 444 60.6
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 1.1e-150 537.3 445 67.2
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 1.4e-150 537.0 444 57.2
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 3.1e-150 535.8 445 58.4
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 5.3e-150 535.0 444 57.4
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 5.3e-150 535.0 445 58.7
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 9.0e-150 534.3 438 57.1
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 1.2e-149 533.9 442 58.4
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 1.2e-149 533.9 446 56.3
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 1.5e-149 533.5 438 57.1
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 4.5e-149 531.9 443 58.5
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 1.3e-148 530.4 444 59.5
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 1.3e-148 530.4 444 57.7
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 2.2e-148 529.6 417 60.9
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 2.9e-148 529.3 440 58.0
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 6.4e-148 528.1 446 57.0
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 1.2e-146 523.9 447 57.5
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 1.2e-146 523.9 444 56.8
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 3.3e-144 515.8 444 55.4
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 9.6e-144 514.2 440 56.6
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 8.1e-143 511.1 417 59.0
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 6.9e-142 508.1 440 57.5
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 3.4e-141 505.8 440 56.8
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 1.0e-140 504.2 442 57.5
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 3.2e-139 499.2 443 56.0
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 5.5e-139 498.4 440 56.4
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 1.8e-137 493.4 362 66.3
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 8.2e-135 484.6 383 62.1
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 1.1e-134 484.2 443 54.2
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 9.0e-134 481.1 443 61.6
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 1.3e-132 477.2 445 53.0
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 4.9e-132 475.3 439 53.5
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 6.5e-132 474.9 365 61.1
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 6.5e-132 474.9 436 55.5
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 2.5e-131 473.0 399 58.1
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 2.1e-130 469.9 418 57.2
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 1.6e-127 460.3 377 58.9
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 1.8e-126 456.8 442 50.5
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 5.3e-126 455.3 441 51.5
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 2.9e-124 449.5 381 55.1
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 3.2e-123 446.0 382 55.0
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 9.4e-123 444.5 444 50.9
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 4.6e-122 442.2 436 53.9
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 3.9e-121 439.1 445 52.4
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 8.8e-121 438.0 367 59.9
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 7.4e-120 434.9 386 54.1
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 1.7e-119 433.7 438 51.1
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 4.2e-115 419.1 437 50.8
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 1.2e-114 417.5 463 47.7
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 2.3e-113 413.3 430 50.5
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 2.2e-111 406.8 314 61.8
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 3.1e-110 402.9 458 46.9
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 7.2e-107 391.7 414 49.5
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 3.8e-92 342.8 308 57.5
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 6.8e-89 332.0 308 56.2
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 2.2e-87 327.0 449 39.9
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 5.4e-86 322.4 430 40.2
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 1.6e-85 320.9 442 40.7
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 5.9e-85 318.9 229 64.6
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 1.5e-83 314.3 378 45.8
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 1.9e-83 313.9 417 42.2
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 1.2e-82 311.2 441 42.0
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 2.1e-82 310.5 367 47.4
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 4.0e-81 306.2 433 39.7
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 2.0e-77 293.9 244 59.4
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.6e-66 257.7 184 64.7
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 2.4e-62 243.8 227 54.2
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 1.0e-60 238.4 518 32.0
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 6.8e-57 225.7 312 41.7
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 3.9e-52 209.9 486 31.9
CiPaw.02G052100 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.1e-49 201.8 150 61.3
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 1.3e-47 194.9 143 60.1
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 1.0e-36 158.7 157 49.7
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 5.3e-33 146.4 489 28.6
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 6.2e-26 122.9 102 52.9
HanXRQChr09g0250561 Helianthus annuus HOM05D001043 ORTHO05D006432 2.0e-24 117.9 93 62.4
PGR142G2310 Punica granatum HOM05D001043 ORTHO05D006432 8.4e-23 112.5 72 62.5
DCAR_028430 Daucus carota HOM05D001043 ORTHO05D006432 1.0e-20 105.5 73 58.9
MCO09G831 Micromonas commoda HOM05D001043 ORTHO05D006432 1.6e-13 81.6 386 25.6
HanXRQChr12g0370191 Helianthus annuus HOM05D001043 ORTHO05D006432 4.5e-08 63.5 64 46.9
PSO063G7211 Papaver somniferum HOM05D006234 ORTHO05D007813 7.7e-08 62.8 137 35.0
PSO832G4587 Papaver somniferum HOM05D006234 ORTHO05D007813 7.7e-08 62.8 137 35.0
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 7.7e-08 62.8 141 31.2
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 1.0e-07 62.4 255 29.0
SalBow5G5218 Salvia bowleyana HOM05D006234 ORTHO05D007813 2.9e-07 60.8 181 30.4
Eucgr.K02833 Eucalyptus grandis HOM05D006234 ORTHO05D007813 3.8e-07 60.5 189 30.2
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 3.8e-07 60.5 117 30.8
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 1.4e-06 58.5 188 28.2
QL10p010716 Quercus lobata HOM05D006234 ORTHO05D007813 1.4e-06 58.5 141 33.3
QL10p011029 Quercus lobata HOM05D006234 ORTHO05D007813 1.4e-06 58.5 141 33.3
unitig_60.g25412 Utricularia gibba HOM05D006234 ORTHO05D007813 1.4e-06 58.5 114 34.2
Cfa019148 Carpinus fangiana HOM05D006234 ORTHO05D007813 5.5e-06 56.6 141 31.9
Haze_07514 Corylus avellana HOM05D006234 ORTHO05D007813 9.4e-06 55.8 141 31.9


User provided reference genes

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