Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g04830 Schrenkiella parvula HOM05D007881 ORTHO05D009922 6.4e-35 150.2 77 100.0
BraA08t35524Z Brassica rapa HOM05D007881 ORTHO05D009922 1.8e-29 132.1 78 88.5
Thhalv10009243m.g Eutrema salsugineum HOM05D007881 ORTHO05D009922 3.1e-29 131.3 78 88.5
AL1G15960 Arabidopsis lyrata HOM05D007881 ORTHO05D009922 6.9e-29 130.2 80 86.2
BcaC07g42091 Brassica carinata HOM05D007881 ORTHO05D009922 1.7e-27 125.6 79 87.3
Carub.0001s0535 Capsella rubella HOM05D007881 ORTHO05D009922 4.9e-27 124.0 80 85.0
A08p36200 Brassica napus HOM05D007881 ORTHO05D009922 2.5e-26 121.7 77 84.4
CARHR005530 Cardamine hirsuta HOM05D007881 ORTHO05D009922 3.2e-26 121.3 77 81.8
BolC8t47025H Brassica oleracea HOM05D007881 ORTHO05D009922 7.1e-26 120.2 77 83.1
AT1G06010 Arabidopsis thaliana HOM05D007881 ORTHO05D009922 1.6e-25 119.0 78 82.1
BcaC07g36818 Brassica carinata HOM05D007881 ORTHO05D009922 7.9e-25 116.7 77 81.8
BraA09t42051Z Brassica rapa HOM05D007881 ORTHO05D009922 1.9e-23 112.1 79 82.3
THA.LOC109117253 Tarenaya hassleriana HOM05D007881 ORTHO05D009922 8.2e-22 106.7 81 69.1
Ciclev10033256m.g Citrus clementina HOM05D007881 ORTHO05D009922 6.7e-16 87.0 76 64.5
BolC8t52672H Brassica oleracea HOM05D007881 ORTHO05D009922 4.3e-15 84.3 81 64.2
A09p67190 Brassica napus HOM05D007881 ORTHO05D009922 9.7e-15 83.2 52 86.5
C08p51460 Brassica napus HOM05D000559 ORTHO05D009922 9.7e-15 83.2 52 86.5
Manes.12G005400 Manihot esculenta HOM05D007881 ORTHO05D009922 9.7e-15 83.2 77 59.7
PGR119G1449 Punica granatum HOM05D007881 ORTHO05D009922 1.1e-13 79.7 69 55.1
Atru.chr6.1889 Acer truncatum HOM05D007881 ORTHO05D009922 1.8e-13 79.0 77 57.1
MD12G1086700 Malus domestica HOM05D007881 ORTHO05D009922 2.4e-13 78.6 76 52.6
COL.COLO4_38031 Corchorus olitorius HOM05D007881 ORTHO05D009922 4.1e-13 77.8 78 56.4
C08p02320 Brassica napus HOM05D007881 ORTHO05D009922 5.3e-13 77.4 57 77.2
Eucgr.B01417 Eucalyptus grandis HOM05D007881 ORTHO05D009922 6.9e-13 77.0 61 65.6
Potri.012G134200 Populus trichocarpa HOM05D007881 ORTHO05D009922 6.9e-13 77.0 79 58.2
Sabra15G0148100 Salix brachista HOM05D007881 ORTHO05D009922 6.9e-13 77.0 76 57.9
ClCG03G010640 Citrullus lanatus HOM05D007881 ORTHO05D009922 9.1e-13 76.6 70 55.7
MD04G1245200 Malus domestica HOM05D007881 ORTHO05D009922 1.2e-12 76.3 75 53.3
Thecc.05G194300 Theobroma cacao HOM05D007881 ORTHO05D009922 1.2e-12 76.3 78 56.4
vmacro10404 Vaccinium macrocarpon HOM05D007881 ORTHO05D009922 1.2e-12 76.3 70 50.0
Cpa.g.sc9.142 Carica papaya HOM05D007881 ORTHO05D009922 2.6e-12 75.1 76 55.3
Gohir.A05G392600 Gossypium hirsutum HOM05D007881 ORTHO05D009922 2.6e-12 75.1 78 57.7
Gohir.D04G024500 Gossypium hirsutum HOM05D007881 ORTHO05D009922 2.6e-12 75.1 78 57.7
Gorai.012G027000 Gossypium raimondii HOM05D007881 ORTHO05D009922 2.6e-12 75.1 78 57.7
TWI36G1222 Tripterygium wilfordii HOM05D007881 ORTHO05D009922 2.6e-12 75.1 78 55.1
GSVIVG01019086001 Vitis vinifera HOM05D007881 ORTHO05D009922 2.6e-12 75.1 68 58.8
Prupe.6G361800 Prunus persica HOM05D007881 ORTHO05D009922 4.5e-12 74.3 44 77.3
CiPaw.07G080900 Carya illinoinensis HOM05D007881 ORTHO05D009922 7.7e-12 73.6 43 79.1
Potri.015G136500 Populus trichocarpa HOM05D007881 ORTHO05D009922 1.0e-11 73.2 76 52.6
TAR362G1041 Trochodendron aralioides HOM05D007881 ORTHO05D009922 2.2e-11 72.0 60 56.7
CsaV3_1G044490 Cucumis sativus L. HOM05D007881 ORTHO05D009922 2.9e-11 71.6 69 55.1
AUR62000305 Chenopodium quinoa HOM05D007881 ORTHO05D009922 3.8e-11 71.2 76 50.0
ATR0215G006 Amborella trichopoda HOM05D007881 ORTHO05D009922 6.5e-11 70.5 71 45.1
MELO3C010052.2 Cucumis melo HOM05D007881 ORTHO05D009922 1.1e-10 69.7 67 55.2
QL12p018644 Quercus lobata HOM05D007881 ORTHO05D009922 1.1e-10 69.7 40 80.0
Cc09_g03690 Coffea canephora HOM05D007881 ORTHO05D009922 1.9e-10 68.9 65 55.4
Nn7g37671 Nelumbo nucifera HOM05D007881 ORTHO05D009922 1.9e-10 68.9 56 57.1
Migut.F02122 Erythranthe guttata HOM05D007881 ORTHO05D009922 2.5e-10 68.6 50 64.0
Aqoxy3G03631 Aquilegia oxysepala HOM05D007881 ORTHO05D009922 3.2e-10 68.2 42 71.4
CSS0004298 Camellia sinensis var. sinensis HOM05D007881 ORTHO05D009922 3.2e-10 68.2 44 68.2
FvH4_6g00460 Fragaria vesca HOM05D007881 ORTHO05D009922 4.2e-10 67.8 60 53.3
Nitab4.5_0000083g0100 Nicotiana tabacum HOM05D007881 ORTHO05D009922 4.2e-10 67.8 47 63.8
Phvul.005G031800 Phaseolus vulgaris HOM05D007881 ORTHO05D009922 5.5e-10 67.4 59 55.9
RcHm_v2.0_Chr3g0447831 Rosa chinensis HOM05D007881 ORTHO05D009922 7.2e-10 67.0 75 49.3
FAN02G0717 Fragaria x ananassa HOM05D007881 ORTHO05D009922 1.2e-09 66.2 49 61.2
AUR62006650 Chenopodium quinoa HOM05D007881 ORTHO05D009922 1.6e-09 65.9 76 47.4
Nitab4.5_0001435g0080 Nicotiana tabacum HOM05D007881 ORTHO05D009922 1.6e-09 65.9 47 61.7
SalBow1G5699 Salvia bowleyana HOM05D007881 ORTHO05D009922 1.6e-09 65.9 63 55.6
CAN.G217.11 Capsicum annuum HOM05D007881 ORTHO05D009922 2.1e-09 65.5 44 63.6
FAN09G3126 Fragaria x ananassa HOM05D007881 ORTHO05D009922 2.1e-09 65.5 60 51.7
Actinidia03288 Actinidia chinensis HOM05D007881 ORTHO05D009922 2.7e-09 65.1 43 67.4
Lalb_Chr25g0282841 Lupinus albus HOM05D007881 ORTHO05D009922 3.6e-09 64.7 67 47.8
Sc16g0010420 Simmondsia chinensis HOM05D003813 ORTHO05D004557 3.6e-09 64.7 67 49.3
Solyc04g056425.1 Solanum lycopersicum HOM05D007881 ORTHO05D009922 3.6e-09 64.7 44 63.6
Sopen04g025320 Solanum pennellii HOM05D000039 ORTHO05D000366 3.6e-09 64.7 44 63.6
DCAR_007684 Daucus carota HOM05D007881 ORTHO05D009922 7.9e-09 63.5 62 48.4
Lj3g0003474 Lotus japonicus HOM05D007881 ORTHO05D009922 7.9e-09 63.5 44 61.4
Peaxi162Scf00048g00055 Petunia axillaris HOM05D007881 ORTHO05D009922 7.9e-09 63.5 44 61.4
arahy.Tifrunner.gnm1.ann1.FFCC7D Arachis hypogaea HOM05D007881 ORTHO05D009922 1.0e-08 63.2 44 61.4
arahy.Tifrunner.gnm1.ann1.X7CW9T Arachis hypogaea HOM05D007881 ORTHO05D009922 1.0e-08 63.2 44 61.4
EL10Ac4g09960 Beta vulgaris HOM05D007881 ORTHO05D009922 1.0e-08 63.2 72 45.8
Glyma.11G151200 Glycine max HOM05D007881 ORTHO05D009922 1.4e-08 62.8 63 54.0
Oeu034791.1 Olea europaea HOM05D007881 ORTHO05D009922 1.4e-08 62.8 44 59.1
Sed0019316 Sechium edule HOM05D007881 ORTHO05D009922 2.3e-08 62.0 38 73.7
HPP92_003553 Vanilla planifolia HOM05D007881 ORTHO05D009922 2.3e-08 62.0 39 69.2
Medtr3g032520 Medicago truncatula HOM05D007881 ORTHO05D009922 3.9e-08 61.2 41 61.0
Lsat_1_v5_gn_1_127981 Lactuca sativa HOM05D007881 ORTHO05D009922 5.1e-08 60.8 73 41.1
Psat5g210160 Pisum sativum HOM05D007881 ORTHO05D009922 1.1e-07 59.7 41 63.4
arahy.Tifrunner.gnm1.ann1.FG2V1D Arachis hypogaea HOM05D007881 ORTHO05D009922 1.5e-07 59.3 44 61.4
ECA232G2986 Erigeron canadensis HOM05D005940 ORTHO05D007027 1.5e-07 59.3 44 56.8
Psat5g211080 Pisum sativum HOM05D007881 ORTHO05D009922 2.0e-07 58.9 56 48.2
Zm00001eb067480 Zea mays HOM05D007881 ORTHO05D009922 2.6e-07 58.5 60 48.3
HanXRQChr16g0510911 Helianthus annuus HOM05D007881 ORTHO05D009922 3.3e-07 58.2 70 48.6
MBI17_g00966_MAGBIO Magnolia biondii HOM05D007881 ORTHO05D009922 3.3e-07 58.2 62 46.8
CDE02G1687 Ceratophyllum demersum HOM05D007881 ORTHO05D009922 7.4e-07 57.0 69 42.0


User provided reference genes

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