Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g04730 Schrenkiella parvula HOM05D008213 ORTHO05D009787 1.8e-249 865.5 464 100.0
Carub.0001s0526 Capsella rubella HOM05D008213 ORTHO05D009787 2.0e-184 649.4 467 78.4
AL1G15840 Arabidopsis lyrata HOM05D008213 ORTHO05D009787 8.6e-183 644.0 474 78.5
Thhalv10009329m.g Eutrema salsugineum HOM05D008213 ORTHO05D009787 2.5e-182 642.5 480 77.9
AT1G05894 Arabidopsis thaliana HOM05D008213 ORTHO05D009787 4.4e-179 631.7 471 77.3
CARHR005430 Cardamine hirsuta HOM05D008213 ORTHO05D009787 4.3e-166 588.6 470 73.8
A08p36230 Brassica napus HOM05D008213 ORTHO05D009787 9.9e-155 550.8 472 69.7
C08p02290 Brassica napus HOM05D008213 ORTHO05D009787 4.9e-154 548.5 470 69.1
BolC8t47021H Brassica oleracea HOM05D008213 ORTHO05D009787 7.8e-152 541.2 470 68.5
BraA08t35527Z Brassica rapa HOM05D008213 ORTHO05D009787 1.1e-150 537.3 472 69.1
BcaC07g36821 Brassica carinata HOM05D008213 ORTHO05D009787 1.3e-138 497.3 469 64.4
Aa31LG1G8440 Aethionema arabicum HOM05D008213 ORTHO05D009787 9.3e-137 491.1 480 63.3
AL4G26740 Arabidopsis lyrata HOM05D008213 ORTHO05D009787 9.6e-118 427.9 504 57.7
AT2G31480 Arabidopsis thaliana HOM05D008213 ORTHO05D009787 4.1e-116 422.5 482 57.9
Thhalv10017539m.g Eutrema salsugineum HOM05D008213 ORTHO05D009787 7.6e-115 418.3 500 57.4
Carub.0004s1279 Capsella rubella HOM05D008213 ORTHO05D009787 1.4e-113 414.1 496 58.5
Sp4g13940 Schrenkiella parvula HOM05D008213 ORTHO05D009787 1.4e-113 414.1 506 55.7
CARHR125120 Cardamine hirsuta HOM05D008213 ORTHO05D009787 2.1e-112 410.2 481 57.0
BraA04t17943Z Brassica rapa HOM05D008213 ORTHO05D009787 7.7e-107 391.7 480 56.2
C04p60980 Brassica napus HOM05D008213 ORTHO05D009787 8.5e-106 388.3 494 55.3
A04p24240 Brassica napus HOM05D008213 ORTHO05D009787 4.2e-105 386.0 487 55.4
THA.LOC104826192 Tarenaya hassleriana HOM05D008213 ORTHO05D009787 1.4e-100 370.9 502 52.6
BcaB06g28538 Brassica carinata HOM05D008213 ORTHO05D009787 1.5e-99 367.5 475 53.9
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 2.9e-98 363.2 456 55.5
BcaC02g07992 Brassica carinata HOM05D008213 ORTHO05D009787 1.9e-89 334.0 440 53.6
BcaC02g11257 Brassica carinata HOM05D008213 ORTHO05D009787 1.6e-88 330.9 472 48.5
A05p14130 Brassica napus HOM05D008213 ORTHO05D009787 3.7e-85 319.7 492 47.0
BraA05t20342Z Brassica rapa HOM05D008213 ORTHO05D009787 3.7e-85 319.7 492 47.0
BcaB02g10392 Brassica carinata HOM05D008213 ORTHO05D009787 3.1e-84 316.6 482 46.7
BcaB02g10393 Brassica carinata HOM05D008213 ORTHO05D009787 1.2e-83 314.7 477 47.2
BcaC02g11256 Brassica carinata HOM05D008213 ORTHO05D009787 1.2e-83 314.7 488 47.7
BolC4t23398H Brassica oleracea HOM05D008213 ORTHO05D009787 1.2e-83 314.7 488 47.7
C04p18480 Brassica napus HOM05D008213 ORTHO05D009787 5.9e-83 312.4 488 46.5
Thecc.04G185000 Theobroma cacao HOM05D008213 ORTHO05D009787 1.0e-34 152.1 530 32.1
QL10p048331 Quercus lobata HOM05D008213 ORTHO05D009787 1.6e-24 118.2 501 29.9
Duzib151G0756 Durio zibethinus HOM05D008213 ORTHO05D009787 6.9e-23 112.8 323 34.4
Dinv44200 Davidia involucrata HOM05D008213 ORTHO05D009787 7.6e-22 109.4 495 29.5
Manes.11G119400 Manihot esculenta HOM05D008213 ORTHO05D009787 2.2e-21 107.8 407 32.2
Cpa.g.sc71.7 Carica papaya HOM05D008213 ORTHO05D009787 1.2e-19 102.1 376 28.2
Prupe.1G190600 Prunus persica HOM05D008213 ORTHO05D009787 3.0e-18 97.4 386 29.5
RcHm_v2.0_Chr4g0407081 Rosa chinensis HOM05D008213 ORTHO05D009787 7.4e-17 92.8 398 29.1
Potri.007G127200 Populus trichocarpa HOM05D008213 ORTHO05D009787 6.2e-16 89.7 475 26.7
PGR142G1601 Punica granatum HOM05D008213 ORTHO05D009787 8.1e-16 89.4 477 26.2
Gohir.D02G016500 Gossypium hirsutum HOM05D008213 ORTHO05D009787 3.1e-15 87.4 377 26.8
CiPaw.01G101800 Carya illinoinensis HOM05D008213 ORTHO05D009787 6.9e-15 86.3 489 26.8
COL.COLO4_24404 Corchorus olitorius HOM05D008213 ORTHO05D009787 3.4e-14 84.0 270 32.6
Gorai.005G020000 Gossypium raimondii HOM05D008213 ORTHO05D009787 4.5e-14 83.6 266 29.7
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 2.2e-13 81.3 445 26.5
GSVIVG01010744001 Vitis vinifera HOM05D008213 ORTHO05D009787 4.2e-12 77.0 406 27.1
CSS0004350 Camellia sinensis var. sinensis HOM05D008213 ORTHO05D009787 5.5e-12 76.6 397 26.2
Hma1.2p1_0754F.1_g213080 Hydrangea macrophylla HOM05D008213 ORTHO05D009787 5.5e-12 76.6 410 28.3
Ciclev10023340m.g Citrus clementina HOM05D008213 ORTHO05D009787 1.6e-11 75.1 215 30.7
TAR362G1061 Trochodendron aralioides HOM05D008213 ORTHO05D009787 1.9e-09 68.2 332 26.5
Atru.chr3.1539 Acer truncatum HOM05D008213 ORTHO05D009787 2.1e-08 64.7 91 41.8
Sabra07G0103200 Salix brachista HOM05D008213 ORTHO05D009787 6.2e-08 63.2 579 24.2
arahy.Tifrunner.gnm1.ann1.0UQ2B1 Arachis hypogaea HOM05D010840 ORTHO05D009787 1.0e-05 55.8 217 26.3
MELO3C017723.2 Cucumis melo HOM05D008213 ORTHO05D009787 1.0e-05 55.8 205 30.2
Glyma.12G053300 Glycine max HOM05D010840 ORTHO05D009787 1.0e-05 55.8 222 27.5


User provided reference genes

Program Settings