Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.1e-78 296.6 150 100.0
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 5.0e-76 287.7 150 96.0
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 6.6e-76 287.3 150 96.0
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 6.2e-74 280.8 157 91.7
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 3.1e-73 278.5 150 92.7
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 1.2e-72 276.6 160 88.8
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 9.8e-72 273.5 150 90.7
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 2.9e-71 271.9 161 88.2
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 5.4e-70 267.7 150 88.7
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.1e-67 260.0 147 85.7
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.2e-66 256.5 150 84.0
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 1.6e-66 256.1 150 84.0
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 2.8e-66 255.4 150 82.7
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 4.7e-66 254.6 150 84.0
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 1.8e-65 252.7 150 82.7
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 1.8e-65 252.7 150 82.7
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 1.8e-65 252.7 147 85.0
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 4.0e-65 251.5 150 82.7
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 4.0e-65 251.5 147 83.0
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 8.9e-65 250.4 150 82.0
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 2.0e-64 249.2 150 80.0
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 3.4e-64 248.4 149 79.9
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 9.9e-64 246.9 147 81.6
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 1.7e-63 246.1 149 79.9
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 1.1e-62 243.4 162 76.5
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 1.3e-60 236.5 147 74.1
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 1.3e-60 236.5 147 74.1
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 1.3e-60 236.5 147 74.1
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 1.9e-59 232.6 150 71.3
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 3.3e-59 231.9 150 74.7
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 3.3e-59 231.9 150 72.0
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 8.1e-58 227.3 147 70.7
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 8.1e-58 227.3 150 72.7
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 4.0e-57 224.9 150 72.0
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 2.6e-56 222.2 150 70.0
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 3.4e-56 221.9 150 70.7
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 2.2e-55 219.2 150 69.3
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 2.2e-55 219.2 150 69.3
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 3.8e-55 218.4 150 68.0
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 4.9e-55 218.0 148 69.6
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 1.1e-54 216.9 150 68.7
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 1.1e-54 216.9 148 69.6
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 1.4e-54 216.5 150 67.3
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 1.9e-54 216.1 150 68.7
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 2.4e-54 215.7 150 70.0
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 2.4e-54 215.7 150 68.7
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 4.1e-54 214.9 150 68.0
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 5.4e-54 214.5 150 68.0
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 7.1e-54 214.2 146 68.5
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 9.2e-54 213.8 147 68.0
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 9.2e-54 213.8 150 66.0
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 1.2e-53 213.4 151 79.5
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.2e-53 213.4 147 68.0
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 2.1e-53 212.6 147 68.0
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 2.1e-53 212.6 147 68.0
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 4.6e-53 211.5 151 76.2
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 7.8e-53 210.7 147 67.3
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 1.3e-52 209.9 150 64.7
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 1.3e-52 209.9 147 67.3
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 3.0e-52 208.8 147 65.3
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 3.0e-52 208.8 147 64.6
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 3.0e-52 208.8 147 66.7
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 3.9e-52 208.4 147 63.9
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 1.5e-51 206.5 147 64.6
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 2.5e-51 205.7 150 62.7
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 5.6e-51 204.5 135 71.1
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 7.3e-51 204.1 150 64.7
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 1.2e-50 203.4 150 64.7
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 1.6e-50 203.0 149 63.1
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 1.6e-50 203.0 146 63.7
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 2.1e-50 202.6 150 63.3
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 2.8e-50 202.2 147 66.0
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 3.6e-50 201.8 149 63.1
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 4.7e-50 201.4 181 55.2
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 6.2e-50 201.1 150 62.7
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 1.8e-49 199.5 147 64.6
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 4.0e-49 198.4 150 63.3
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 6.9e-49 197.6 147 61.9
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 6.9e-49 197.6 149 61.1
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 9.0e-49 197.2 149 60.4
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.2e-48 196.8 150 62.7
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 1.5e-48 196.4 148 64.2
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 2.0e-48 196.1 149 61.7
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 2.6e-48 195.7 147 61.9
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 3.4e-48 195.3 150 60.0
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 3.4e-48 195.3 149 59.7
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 4.4e-48 194.9 150 60.7
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 4.4e-48 194.9 150 64.0
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 7.6e-48 194.1 143 62.2
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 7.6e-48 194.1 152 61.8
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 9.9e-48 193.7 151 60.9
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 9.9e-48 193.7 148 61.5
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 1.3e-47 193.4 149 58.4
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 1.3e-47 193.4 149 60.4
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 1.7e-47 193.0 143 61.5
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.7e-47 193.0 143 61.5
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.7e-47 193.0 143 61.5
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.7e-47 193.0 143 61.5
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.2e-47 192.6 145 60.7
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.2e-47 192.6 145 60.7
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 2.9e-47 192.2 147 60.5
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 4.9e-47 191.4 149 59.1
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 4.9e-47 191.4 149 59.7
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 6.4e-47 191.0 149 59.1
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 8.4e-47 190.7 150 60.0
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 1.1e-46 190.3 142 60.6
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.4e-46 189.9 144 62.5
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 1.9e-46 189.5 150 60.0
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 1.9e-46 189.5 147 63.3
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.9e-46 189.5 170 57.6
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 1.9e-46 189.5 146 60.3
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 1.9e-46 189.5 146 59.6
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 4.2e-46 188.3 147 59.2
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 7.1e-46 187.6 144 61.1
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 7.1e-46 187.6 141 62.4
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 9.3e-46 187.2 144 60.4
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 9.3e-46 187.2 139 61.9
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 1.6e-45 186.4 150 57.3
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 1.6e-45 186.4 149 56.4
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 1.0e-44 183.7 149 59.1
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 1.3e-44 183.3 144 59.7
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 1.7e-44 183.0 222 44.6
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 2.3e-44 182.6 149 55.0
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 3.0e-44 182.2 150 56.7
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 3.0e-44 182.2 150 56.7
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 6.6e-44 181.0 161 54.0
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 1.1e-43 180.3 147 61.2
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 1.5e-43 179.9 147 59.9
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 2.5e-43 179.1 141 60.3
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 4.3e-43 178.3 140 59.3
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 5.6e-43 177.9 139 59.7
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 7.3e-43 177.6 151 56.3
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 9.6e-43 177.2 143 57.3
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 9.6e-43 177.2 143 57.3
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 1.6e-42 176.4 107 79.4
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 1.4e-41 173.3 140 57.9
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 9.0e-41 170.6 193 47.2
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.7e-39 166.4 143 55.9
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 1.5e-35 153.3 142 56.3
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 1.6e-34 149.8 149 48.3
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 2.8e-34 149.1 130 57.7
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 2.8e-34 149.1 130 57.7
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 4.5e-32 141.7 106 58.5
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 1.7e-31 139.8 149 46.3
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 1.7e-31 139.8 108 58.3
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 1.7e-31 139.8 108 58.3
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 6.4e-31 137.9 133 52.6
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 3.2e-30 135.6 99 65.7
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 3.5e-29 132.1 89 69.7
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.3e-28 130.2 89 71.9
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 3.9e-28 128.6 89 68.5
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 6.7e-28 127.9 143 45.5
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 1.1e-27 127.1 91 67.0
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 2.5e-27 125.9 138 51.4
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 5.6e-27 124.8 89 67.4
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 9.0e-25 117.5 142 41.5
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 4.5e-24 115.2 82 61.0
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 1.6e-21 106.7 86 52.3
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 2.7e-21 105.9 149 37.6
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 1.0e-20 104.0 132 37.9
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 1.6e-18 96.7 138 33.3
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 2.8e-18 95.9 52 86.5
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 2.2e-15 86.3 129 27.1
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 2.9e-15 85.9 142 35.2
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 4.2e-14 82.0 72 52.8
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 5.5e-14 81.6 39 92.3
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 1.2e-13 80.5 101 39.6
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 6.1e-13 78.2 140 25.7
BcaC02g08825 Brassica carinata HOM05D003922 ORTHO05D031941 1.0e-12 77.4 52 76.9
BolC4t26594H Brassica oleracea HOM05D003922 ORTHO05D031941 2.3e-12 76.3 52 75.0
C04p50010 Brassica napus HOM05D003922 ORTHO05D031941 3.0e-12 75.9 52 75.0
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 3.9e-12 75.5 85 44.7
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 5.1e-12 75.1 104 32.7
AL1G15650 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 6.7e-12 74.7 82 51.2
Mapoly0006s0297 Marchantia polymorpha HOM05D003922 ORTHO05D004492 4.1e-09 65.5 130 25.4
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 3.4e-08 62.4 86 38.4
AUR62023777 Chenopodium quinoa HOM05D003922 ORTHO05D004492 1.3e-07 60.5 46 63.0
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 1.7e-07 60.1 138 27.5
Cre12.g551900 Chlamydomonas reinhardtii HOM05D003922 ORTHO05D004492 1.7e-07 60.1 135 24.4


User provided reference genes

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