Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g04300 Schrenkiella parvula HOM05D012198 ORTHO05D008817 5.5e-136 487.6 250 100.0
Thhalv10008449m.g Eutrema salsugineum HOM05D012198 ORTHO05D008817 9.9e-85 317.4 275 67.6
BcaB02g06861 Brassica carinata HOM05D012198 ORTHO05D008817 5.4e-83 311.6 266 65.8
C05p03770 Brassica napus HOM05D012198 ORTHO05D008817 2.3e-81 306.2 275 65.1
BolC5t29154H Brassica oleracea HOM05D012198 ORTHO05D008817 2.3e-81 306.2 275 65.1
BcaC05g24387 Brassica carinata HOM05D012198 ORTHO05D008817 8.7e-81 304.3 275 64.7
Carub.0001s0476 Capsella rubella HOM05D012198 ORTHO05D008817 3.3e-80 302.4 271 63.8
CARHR205340 Cardamine hirsuta HOM05D012198 ORTHO05D008817 1.2e-77 293.9 261 63.2
A10p04130 Brassica napus HOM05D012198 ORTHO05D008817 2.6e-77 292.7 274 62.4
BraA10t42683Z Brassica rapa HOM05D012198 ORTHO05D008817 2.6e-77 292.7 274 62.4
AT1G05430 Arabidopsis thaliana HOM05D012198 ORTHO05D008817 8.4e-76 287.7 270 60.7
AL1G15270 Arabidopsis lyrata HOM05D012198 ORTHO05D008817 1.5e-72 276.9 270 58.9
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 2.4e-67 259.6 269 59.1
BcaC05g24389 Brassica carinata HOM05D012198 ORTHO05D008817 2.6e-61 239.6 147 78.9
THA.LOC104826165 Tarenaya hassleriana HOM05D012198 ORTHO05D008817 1.8e-54 216.9 257 51.4
Nn1g02349 Nelumbo nucifera HOM05D007633 ORTHO05D008817 8.0e-18 95.1 239 30.5
QL06p002095 Quercus lobata HOM05D007633 ORTHO05D008817 3.0e-17 93.2 162 33.3
Gohir.A09G053600 Gossypium hirsutum HOM05D007633 ORTHO05D008817 4.0e-17 92.8 238 31.1
TAR636G0739 Trochodendron aralioides HOM05D007633 ORTHO05D008817 4.0e-17 92.8 230 30.9
Phvul.002G044600 Phaseolus vulgaris HOM05D007633 ORTHO05D008817 5.2e-17 92.4 261 32.2
Thecc.04G233700 Theobroma cacao HOM05D007633 ORTHO05D008817 8.8e-17 91.7 247 27.5
Gohir.D09G053050 Gossypium hirsutum HOM05D007633 ORTHO05D008817 1.2e-16 91.3 238 30.7
Potri.008G154200 Populus trichocarpa HOM05D007633 ORTHO05D008817 1.2e-16 91.3 243 32.1
Eucgr.H03451 Eucalyptus grandis HOM05D007633 ORTHO05D008817 1.5e-16 90.9 277 28.5
Gorai.006G055000 Gossypium raimondii HOM05D007633 ORTHO05D008817 1.5e-16 90.9 241 29.5
Manes.03G177200 Manihot esculenta HOM05D007633 ORTHO05D008817 2.6e-16 90.1 251 29.5
Glyma.11G006100 Glycine max HOM05D007633 ORTHO05D008817 4.4e-16 89.4 260 31.5
Atru.chr4.2449 Acer truncatum HOM05D007633 ORTHO05D008817 2.8e-15 86.7 253 26.5
Cfa015662 Carpinus fangiana HOM05D007633 ORTHO05D008817 1.1e-14 84.7 251 28.3
ATR0697G107 Amborella trichopoda HOM05D007633 ORTHO05D008817 1.8e-14 84.0 141 32.6
Dinv14003 Davidia involucrata HOM05D007633 ORTHO05D008817 4.1e-14 82.8 231 26.0
Haze_00885 Corylus avellana HOM05D007633 ORTHO05D008817 9.1e-14 81.6 172 30.8
Ciclev10005651m.g Citrus clementina HOM05D007633 ORTHO05D008817 1.2e-13 81.3 257 28.0
Cc03_g03920 Coffea canephora HOM05D007633 ORTHO05D008817 1.2e-13 81.3 244 29.9
Psat4g209480 Pisum sativum HOM05D007633 ORTHO05D008817 1.2e-13 81.3 274 29.2
MSTRG.21860 Avicennia marina HOM05D007633 ORTHO05D008817 1.6e-13 80.9 226 29.6
GSVIVG01017995001 Vitis vinifera HOM05D007633 ORTHO05D008817 1.6e-13 80.9 241 31.1
TPR.G38043 Trifolium pratense HOM05D007633 ORTHO05D008817 2.0e-13 80.5 232 26.7
Rhsim02G0025900 Rhododendron simsii HOM05D007633 ORTHO05D008817 2.7e-13 80.1 200 29.0
CsaV3_3G013230 Cucumis sativus L. HOM05D007633 ORTHO05D008817 5.9e-13 79.0 263 31.2
Glyma.01G237200 Glycine max HOM05D007633 ORTHO05D008817 5.9e-13 79.0 249 31.3
Prupe.1G015500 Prunus persica HOM05D007633 ORTHO05D008817 5.9e-13 79.0 151 31.1
HanXRQChr02g0035611 Helianthus annuus HOM05D007633 ORTHO05D008817 7.7e-13 78.6 219 29.7
CSS0018565 Camellia sinensis var. sinensis HOM05D007633 ORTHO05D008817 1.3e-12 77.8 244 28.7
VMungo1215G1793 Vigna mungo HOM05D007633 ORTHO05D008817 2.9e-12 76.6 263 27.8
Medtr5g006410 Medicago truncatula HOM05D007633 ORTHO05D008817 3.8e-12 76.3 218 28.9
MELO3C006526.2 Cucumis melo HOM05D007633 ORTHO05D008817 5.0e-12 75.9 252 28.2
Ca_24403_v3 Cicer arietinum L. HOM05D007633 ORTHO05D008817 1.1e-11 74.7 172 30.2
Actinidia36954 Actinidia chinensis HOM05D007633 ORTHO05D008817 1.5e-11 74.3 164 26.8
Migut.N00191 Erythranthe guttata HOM05D007633 ORTHO05D008817 1.5e-11 74.3 205 27.8
Potri.010G086300 Populus trichocarpa HOM05D007633 ORTHO05D008817 4.2e-11 72.8 255 29.0
CANSAT78G1135 Cannabis sativa HOM05D007633 ORTHO05D008817 7.2e-11 72.0 254 25.2
Duzib212G0599 Durio zibethinus HOM05D007633 ORTHO05D008817 1.6e-10 70.9 175 30.9
LjContig00408g0001251 Lotus japonicus HOM05D007633 ORTHO05D008817 1.6e-10 70.9 272 28.7
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 2.8e-10 70.1 255 27.5
TWI73G0352 Tripterygium wilfordii HOM05D007633 ORTHO05D008817 2.8e-10 70.1 247 28.3
Aqoxy2G03409 Aquilegia oxysepala HOM05D007633 ORTHO05D008817 3.6e-10 69.7 210 27.1
Lsat_1_v5_gn_7_64401 Lactuca sativa HOM05D007633 ORTHO05D008817 6.1e-10 68.9 209 26.8
Oeu011618.1 Olea europaea HOM05D007633 ORTHO05D008817 6.1e-10 68.9 215 24.7
PGR004G0463 Punica granatum HOM05D007633 ORTHO05D008817 8.0e-10 68.6 245 27.3
Sopen09g031040 Solanum pennellii HOM05D007633 ORTHO05D008817 2.3e-09 67.0 218 28.4
PGSC0003DMG400032254 Solanum tuberosum HOM05D007633 ORTHO05D008817 3.0e-09 66.6 215 28.4
ECA240G3784 Erigeron canadensis HOM05D000137 ORTHO05D000452 5.2e-09 65.9 207 29.0
Lalb_Chr01g0013131 Lupinus albus HOM05D007633 ORTHO05D008817 5.2e-09 65.9 257 29.2
Sed0010969 Sechium edule HOM05D007633 ORTHO05D008817 8.8e-09 65.1 165 29.1
Solyc09g082160.4 Solanum lycopersicum HOM05D007633 ORTHO05D008817 8.8e-09 65.1 218 28.0
HPP92_006116 Vanilla planifolia HOM05D007633 ORTHO05D008817 8.8e-09 65.1 237 27.8
CiPaw.01G167500 Carya illinoinensis HOM05D007633 ORTHO05D008817 1.2e-08 64.7 247 26.3
MD16G1195500 Malus domestica HOM05D007633 ORTHO05D008817 2.0e-08 63.9 231 26.4
SEGI_17234 Sequoiadendron giganteum HOM05D007633 ORTHO05D008817 2.6e-08 63.5 153 32.0
Nitab4.5_0001342g0010 Nicotiana tabacum HOM05D007633 ORTHO05D008817 3.4e-08 63.2 239 27.2
Sabra10G0057400 Salix brachista HOM05D007633 ORTHO05D008817 3.4e-08 63.2 247 26.3
Cpa.g.sc58.94 Carica papaya HOM05D007633 ORTHO05D008817 5.7e-08 62.4 75 38.7
VMungo1215G1192 Vigna mungo HOM05D007633 ORTHO05D008817 5.7e-08 62.4 173 31.2
SalBow3G0862 Salvia bowleyana HOM05D007633 ORTHO05D008817 3.7e-07 59.7 230 27.4
Sopen06g019290 Solanum pennellii HOM05D007633 ORTHO05D008817 3.7e-07 59.7 170 30.6
Nitab4.5_0008118g0020 Nicotiana tabacum HOM05D007633 ORTHO05D008817 6.3e-07 58.9 250 26.0
Peaxi162Scf00092g00615 Petunia axillaris HOM05D007633 ORTHO05D008817 8.3e-07 58.5 105 34.3
CDE07G1037 Ceratophyllum demersum HOM05D007633 ORTHO05D008817 1.8e-06 57.4 79 38.0
Nitab4.5_0001920g0040 Nicotiana tabacum HOM05D007633 ORTHO05D008817 4.1e-06 56.2 162 29.6


User provided reference genes

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