Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 0.0e+00 1444.5 882 100.0
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 2.8e-235 819.3 1022 62.0
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 3.1e-197 693.0 898 53.6
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 3.2e-194 682.9 882 59.1
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 3.0e-192 676.4 886 59.1
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 6.2e-190 668.7 882 60.1
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 9.9e-188 661.4 882 49.2
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 6.6e-184 648.7 882 57.3
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 2.5e-183 646.7 882 60.4
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 6.2e-182 642.1 895 56.0
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 1.1e-178 631.3 882 58.4
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 4.1e-178 629.4 897 59.3
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 2.5e-175 620.2 883 49.8
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 1.5e-172 610.9 881 54.5
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 1.5e-172 610.9 881 54.5
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 9.9e-164 581.6 582 59.8
AT4G20720 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 9.7e-135 485.3 785 47.5
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 5.3e-133 479.6 886 49.1
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 8.2e-126 455.7 603 57.0
AT1G05090 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 4.8e-118 429.9 314 75.2
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 8.6e-99 365.9 236 81.8
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 2.4e-64 251.5 765 28.9
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 4.6e-60 237.3 760 31.3
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 9.3e-53 213.0 776 31.1
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 1.2e-52 212.6 906 27.2
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 3.1e-48 198.0 553 28.9
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 6.9e-48 196.8 553 29.1
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 9.3e-45 186.4 756 27.1
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 2.1e-44 185.3 549 28.6
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 4.6e-44 184.1 562 29.4
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 7.9e-44 183.3 543 30.0
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 1.8e-43 182.2 549 29.9
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 1.1e-42 179.5 250 42.8
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 1.5e-42 179.1 550 28.4
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 2.5e-42 178.3 587 27.6
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 5.6e-42 177.2 244 43.0
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.3e-41 176.0 553 39.8
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 3.7e-41 174.5 573 38.4
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 4.8e-41 174.1 229 42.8
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 6.2e-41 173.7 247 42.1
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 1.8e-40 172.2 542 29.0
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 2.4e-40 171.8 241 42.7
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 5.3e-40 170.6 560 29.8
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 6.9e-40 170.2 549 28.2
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 6.9e-40 170.2 242 39.7
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 9.0e-40 169.9 965 25.1
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 1.5e-39 169.1 553 39.6
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 2.0e-39 168.7 224 41.5
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 5.8e-39 167.2 234 43.6
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 7.6e-39 166.8 547 29.6
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 1.3e-38 166.0 238 40.8
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 1.7e-38 165.6 237 40.5
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 1.7e-38 165.6 578 28.2
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 2.9e-38 164.9 238 41.6
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 3.8e-38 164.5 544 40.3
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 1.9e-37 162.2 245 38.8
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 1.9e-37 162.2 243 39.9
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 1.9e-37 162.2 235 40.4
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 1.9e-37 162.2 466 26.8
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 3.2e-37 161.4 553 39.8
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 3.2e-37 161.4 593 30.5
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 7.1e-37 160.2 243 39.1
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 9.3e-37 159.8 245 38.4
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 9.3e-37 159.8 248 40.7
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 9.3e-37 159.8 245 38.4
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.2e-36 159.5 544 39.2
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 2.1e-36 158.7 221 42.5
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 3.5e-36 157.9 244 40.2
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 7.9e-36 156.8 228 40.8
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 3.9e-35 154.5 545 26.8
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 3.9e-35 154.5 565 33.6
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 8.7e-35 153.3 726 29.2
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 1.1e-34 152.9 861 22.9
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 1.9e-34 152.1 539 27.6
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 2.5e-34 151.8 245 40.0
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 5.6e-34 150.6 514 27.2
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 4.8e-33 147.5 613 25.4
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 8.2e-33 146.7 613 25.0
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 6.9e-32 143.7 525 29.1
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 1.2e-31 142.9 867 22.8
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 1.2e-31 142.9 230 39.6
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 7.6e-31 140.2 550 28.9
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 1.0e-30 139.8 222 40.1
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 1.7e-30 139.0 879 29.6
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 1.7e-30 139.0 235 35.3
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 2.2e-30 138.7 226 36.3
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 2.2e-30 138.7 233 35.6
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 2.9e-30 138.3 224 36.2
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 6.5e-30 137.1 230 37.4
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 8.4e-30 136.7 185 44.3
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 1.9e-29 135.6 229 38.9
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 2.5e-29 135.2 230 36.5
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 2.5e-29 135.2 206 41.3
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 4.2e-29 134.4 237 36.7
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 7.9e-28 130.2 239 34.3
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 1.0e-27 129.8 538 28.1
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 1.3e-27 129.4 591 25.5
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 1.3e-25 122.9 180 37.8
Duzib133G0609 Durio zibethinus HOM05D005385 ORTHO05D006768 8.2e-25 120.2 346 31.8
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 5.3e-24 117.5 112 50.0
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 6.9e-24 117.1 242 34.7
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 1.5e-23 115.9 155 40.6
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 2.9e-22 111.7 553 25.1
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 5.0e-22 110.9 184 37.0
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 1.1e-21 109.8 197 37.6
AUR62043283 Chenopodium quinoa HOM05D005385 ORTHO05D006768 2.5e-21 108.6 237 32.9
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 2.5e-21 108.6 226 35.0
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 3.2e-21 108.2 178 37.6
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 3.6e-20 104.8 199 34.2
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 3.6e-20 104.8 236 33.1
AUR62043954 Chenopodium quinoa HOM05D005385 ORTHO05D006768 7.9e-20 103.6 226 33.2
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 1.1e-18 99.8 232 31.5
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 2.8e-17 95.1 158 38.0
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 4.8e-17 94.4 553 23.7
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 6.3e-17 94.0 247 31.2
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 1.1e-16 93.2 169 38.5
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.2e-15 89.7 145 42.1
BcaB04g19303 Brassica carinata HOM05D005385 ORTHO05D006768 4.2e-13 81.3 53 77.4
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 1.4e-11 76.3 112 41.1
BcaB04g17601 Brassica carinata HOM05D005385 ORTHO05D039913 2.3e-11 75.5 58 67.2
C02p46800 Brassica napus HOM05D005385 ORTHO05D039913 4.8e-09 67.8 44 75.0
DCAR_021158 Daucus carota HOM05D005385 ORTHO05D006768 5.3e-08 64.3 171 34.5
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 1.2e-07 63.2 111 38.7
BcaB05g22977 Brassica carinata HOM05D005385 ORTHO05D006768 2.0e-07 62.4 100 44.0
HPP92_018560 Vanilla planifolia HOM05D005385 ORTHO05D006768 3.5e-07 61.6 99 36.4
Mapoly0147s0032 Marchantia polymorpha HOM05D005385 ORTHO05D006768 2.9e-06 58.5 100 35.0
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 5.0e-06 57.8 190 32.6
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 5.0e-06 57.8 190 32.6


User provided reference genes

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