Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g03930 Schrenkiella parvula HOM05D002897 ORTHO05D008718 8.3e-140 500.4 252 100.0
Thhalv10008572m.g Eutrema salsugineum HOM05D002897 ORTHO05D008718 7.5e-133 477.2 252 94.8
AT1G05060 Arabidopsis thaliana HOM05D002897 ORTHO05D008718 5.6e-128 461.1 254 92.5
AL1G14810 Arabidopsis lyrata HOM05D002897 ORTHO05D008718 2.3e-126 455.7 254 90.9
Carub.0001s0433 Capsella rubella HOM05D002897 ORTHO05D008718 3.7e-124 448.4 253 88.9
BraA09t38920Z Brassica rapa HOM05D002897 ORTHO05D008718 2.4e-123 445.7 252 88.5
BcaC05g27288 Brassica carinata HOM05D002897 ORTHO05D008718 6.0e-122 441.0 254 87.8
BolC5t31920H Brassica oleracea HOM05D002897 ORTHO05D008718 1.5e-120 436.4 254 87.4
A09p33710 Brassica napus HOM05D002897 ORTHO05D008718 3.6e-119 431.8 277 80.5
CARHR004510 Cardamine hirsuta HOM05D002897 ORTHO05D008718 4.7e-119 431.4 254 87.4
BcaB07g32946 Brassica carinata HOM05D002897 ORTHO05D008718 8.9e-118 427.2 254 85.8
C05p31940 Brassica napus HOM05D002897 ORTHO05D008718 6.4e-116 421.0 279 78.9
THA.LOC104826141 Tarenaya hassleriana HOM05D002897 ORTHO05D008718 3.9e-105 385.2 252 75.8
Aa31LG1G19710 Aethionema arabicum HOM05D002897 ORTHO05D008718 6.7e-97 357.8 299 64.5
Cpa.g.sc132.3 Carica papaya HOM05D002897 ORTHO05D008718 1.0e-89 334.0 254 68.5
Duzib138G1172 Durio zibethinus HOM05D002897 ORTHO05D008718 1.8e-89 333.2 249 70.3
Thecc.01G180000 Theobroma cacao HOM05D002897 ORTHO05D008718 3.0e-89 332.4 252 68.7
Manes.13G067751 Manihot esculenta HOM05D002897 ORTHO05D008718 3.3e-88 328.9 252 67.9
Manes.13G067750 Manihot esculenta HOM05D002897 ORTHO05D008718 7.4e-88 327.8 252 67.5
Potri.014G156700 Populus trichocarpa HOM05D002897 ORTHO05D008718 2.1e-87 326.2 255 67.1
Atru.chr6.3235 Acer truncatum HOM05D002897 ORTHO05D008718 1.1e-86 323.9 257 66.5
TWI18G1283 Tripterygium wilfordii HOM05D002897 ORTHO05D008718 1.4e-86 323.6 256 64.1
Ciclev10016301m.g Citrus clementina HOM05D002897 ORTHO05D008718 2.0e-85 319.7 261 64.0
Sabra14G0118500 Salix brachista HOM05D002897 ORTHO05D008718 1.1e-83 313.9 254 66.1
Gorai.007G171100 Gossypium raimondii HOM05D002897 ORTHO05D008718 4.2e-83 312.0 252 65.1
Gohir.D11G160500 Gossypium hirsutum HOM05D002897 ORTHO05D008718 1.2e-82 310.5 252 64.7
RcHm_v2.0_Chr2g0158471 Rosa chinensis HOM05D002897 ORTHO05D008718 1.6e-82 310.1 252 64.7
TAR624G0001 Trochodendron aralioides HOM05D002897 ORTHO05D008718 1.6e-82 310.1 259 64.9
Solyc07g049200.4 Solanum lycopersicum HOM05D002897 ORTHO05D008718 7.9e-82 307.8 257 63.4
Cfa014332 Carpinus fangiana HOM05D002897 ORTHO05D008718 1.3e-81 307.0 255 63.5
Gohir.A11G153700 Gossypium hirsutum HOM05D002897 ORTHO05D008718 6.7e-81 304.7 252 63.9
PGSC0003DMG400000696 Solanum tuberosum HOM05D002897 ORTHO05D008718 6.7e-81 304.7 254 63.4
Nn1g07262 Nelumbo nucifera HOM05D002897 ORTHO05D008718 1.5e-80 303.5 259 62.5
Sopen07g025210 Solanum pennellii HOM05D002897 ORTHO05D008718 3.3e-80 302.4 252 62.7
Actinidia09731 Actinidia chinensis HOM05D002897 ORTHO05D008718 2.8e-79 299.3 253 63.2
Peaxi162Scf00921g00023 Petunia axillaris HOM05D002897 ORTHO05D008718 3.7e-79 298.9 256 62.1
Prupe.3G212700 Prunus persica HOM05D002897 ORTHO05D008718 8.2e-79 297.7 257 61.9
Hma1.2p1_2044F.1_g312350 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 1.1e-78 297.4 257 63.0
Nitab4.5_0012091g0010 Nicotiana tabacum HOM05D002897 ORTHO05D008718 2.4e-78 296.2 251 62.5
CSS0022002 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 3.1e-78 295.8 252 63.1
CiPaw.03G157200 Carya illinoinensis HOM05D002897 ORTHO05D008718 6.9e-78 294.7 256 60.5
Rhsim06G0166000 Rhododendron simsii HOM05D002897 ORTHO05D008718 1.2e-77 293.9 263 60.8
VMungo0647G1784 Vigna mungo HOM05D002897 ORTHO05D008718 5.9e-77 291.6 251 60.2
vmacro12177 Vaccinium macrocarpon HOM05D002897 ORTHO05D008718 1.3e-76 290.4 252 61.9
MELO3C018838.2 Cucumis melo HOM05D002897 ORTHO05D008718 1.7e-76 290.0 260 59.2
Glyma.14G046500 Glycine max HOM05D002897 ORTHO05D008718 1.7e-76 290.0 250 60.4
FvH4_6g42620 Fragaria vesca HOM05D002897 ORTHO05D008718 2.9e-76 289.3 254 60.6
GSVIVG01030483001 Vitis vinifera HOM05D002897 ORTHO05D008718 3.8e-76 288.9 254 60.6
MSTRG.14141 Avicennia marina HOM05D002897 ORTHO05D008718 5.0e-76 288.5 255 59.6
Nitab4.5_0000482g0070 Nicotiana tabacum HOM05D002897 ORTHO05D008718 5.0e-76 288.5 256 60.9
Haze_12787 Corylus avellana HOM05D002897 ORTHO05D008718 6.5e-76 288.1 275 57.8
Dinv39736 Davidia involucrata HOM05D002897 ORTHO05D008718 6.5e-76 288.1 258 61.6
FAN02G2770 Fragaria x ananassa HOM05D002897 ORTHO05D008718 6.5e-76 288.1 254 61.0
CsaV3_7G003360 Cucumis sativus L. HOM05D002897 ORTHO05D008718 8.5e-76 287.7 256 60.2
FAN05G4893 Fragaria x ananassa HOM05D002897 ORTHO05D008718 1.1e-75 287.3 254 60.2
ClCG02G002140 Citrullus lanatus HOM05D002897 ORTHO05D008718 1.4e-75 287.0 257 59.5
Phvul.008G211400 Phaseolus vulgaris HOM05D002897 ORTHO05D008718 2.5e-75 286.2 254 59.1
Sc06g0009610 Simmondsia chinensis HOM05D002897 ORTHO05D008718 5.5e-75 285.0 258 60.1
Lsat_1_v5_gn_5_123640 Lactuca sativa HOM05D002897 ORTHO05D008718 1.6e-74 283.5 257 59.5
Sed0013072 Sechium edule HOM05D002897 ORTHO05D008718 1.6e-74 283.5 252 59.5
HanXRQChr12g0373611 Helianthus annuus HOM05D002897 ORTHO05D008718 6.1e-74 281.6 257 60.7
Medtr5g085980 Medicago truncatula HOM05D002897 ORTHO05D008718 7.9e-74 281.2 250 57.6
Glyma.02G270500 Glycine max HOM05D002897 ORTHO05D008718 1.0e-73 280.8 252 58.3
TPR.G14446 Trifolium pratense HOM05D002897 ORTHO05D008718 1.0e-73 280.8 253 56.9
AUR62035641 Chenopodium quinoa HOM05D002897 ORTHO05D008718 1.8e-73 280.0 253 59.3
Cc05_g03270 Coffea canephora HOM05D002897 ORTHO05D008718 3.0e-73 279.3 254 60.2
Lj8C128G4 Lonicera japonica HOM05D002897 ORTHO05D008718 3.0e-73 279.3 254 60.6
arahy.Tifrunner.gnm1.ann1.QRVI7E Arachis hypogaea HOM05D002897 ORTHO05D008718 6.7e-73 278.1 268 55.2
arahy.Tifrunner.gnm1.ann1.YEZ88R Arachis hypogaea HOM05D002897 ORTHO05D008718 9.7e-72 274.2 268 54.5
ECA234G1553 Erigeron canadensis HOM05D002897 ORTHO05D008718 9.7e-72 274.2 254 59.4
QL08p031170 Quercus lobata HOM05D002897 ORTHO05D008718 1.3e-71 273.9 256 57.8
Lalb_Chr04g0249891 Lupinus albus HOM05D002897 ORTHO05D008718 2.2e-71 273.1 257 58.0
Aqoxy1G03476 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 8.2e-71 271.2 259 60.2
AUR62017163 Chenopodium quinoa HOM05D002897 ORTHO05D008718 1.1e-70 270.8 244 59.4
EL10Ac4g07512 Beta vulgaris HOM05D002897 ORTHO05D008718 1.4e-70 270.4 262 58.0
Eucgr.A01101 Eucalyptus grandis HOM05D002897 ORTHO05D008718 2.4e-70 269.6 264 54.9
LjContig00564g0002899 Lotus japonicus HOM05D002897 ORTHO05D008718 5.3e-70 268.5 256 54.7
Psat4g114440 Pisum sativum HOM05D002897 ORTHO05D008718 5.3e-70 268.5 250 55.2
SalBow1G3579 Salvia bowleyana HOM05D002897 ORTHO05D008718 9.1e-70 267.7 268 55.6
Ca_06120_v3 Cicer arietinum L. HOM05D002897 ORTHO05D008718 2.0e-69 266.5 253 55.7
Hma1.2p1_1986F.1_g310090 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 4.5e-69 265.4 203 66.5
Oeu051891.2 Olea europaea HOM05D002897 ORTHO05D008718 4.5e-69 265.4 282 53.5
SalBow1G2496 Salvia bowleyana HOM05D002897 ORTHO05D008718 4.5e-69 265.4 261 56.3
SGA_v2.0_scaffold49G18345 Striga asiatica HOM05D002897 ORTHO05D008718 7.7e-69 264.6 260 54.6
Migut.H01234 Erythranthe guttata HOM05D002897 ORTHO05D008718 2.5e-67 259.6 266 55.3
Zm00001eb280010 Zea mays HOM05D002897 ORTHO05D008718 1.6e-66 256.9 252 55.2
Os06g0239700 Oryza sativa ssp. japonica HOM05D002897 ORTHO05D008718 3.9e-65 252.3 251 53.4
MBI19_g24999_MAGBIO Magnolia biondii HOM05D002897 ORTHO05D008718 2.0e-64 250.0 256 57.8
Aqoxy1G03469 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 3.5e-61 239.2 260 51.5
MD17G1102200 Malus domestica HOM05D002897 ORTHO05D008718 7.7e-61 238.0 215 60.0
CDE07G0516 Ceratophyllum demersum HOM05D002897 ORTHO05D008718 2.9e-60 236.1 255 52.5
PSO210G2604 Papaver somniferum HOM05D002897 ORTHO05D008718 1.0e-57 227.6 255 49.8
FAN14G2576 Fragaria x ananassa HOM05D002897 ORTHO05D008718 7.4e-56 221.5 254 51.2
Hma1.2p1_2044F.1_g312360 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 2.2e-55 219.9 194 63.4
DCAR_012931 Daucus carota HOM05D002897 ORTHO05D008718 1.2e-53 214.2 258 49.6
COL.COLO4_21853 Corchorus olitorius HOM05D002897 ORTHO05D008718 3.2e-51 206.1 156 67.3
HPP92_017354 Vanilla planifolia HOM05D002897 ORTHO05D008718 2.8e-47 193.0 248 46.4
unitig_21.g21003 Utricularia gibba HOM05D002897 ORTHO05D008718 5.5e-43 178.7 161 54.7
SEGI_41028 Sequoiadendron giganteum HOM05D002897 ORTHO05D008718 1.1e-38 164.5 241 41.9
CSS0034853 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 5.0e-36 155.6 172 50.6
ATR0059G011 Amborella trichopoda HOM05D002897 ORTHO05D008718 7.8e-29 131.7 140 57.1
Pp3c23_20260 Physcomitrium patens HOM05D002897 ORTHO05D008718 5.0e-28 129.0 245 38.4
AagrBONN_evm.TU.Sc2ySwM_117.2821 Anthoceros agrestis HOM05D002897 ORTHO05D008718 7.3e-27 125.2 232 37.9
Aa31sc72G10 Aethionema arabicum HOM05D002897 ORTHO05D008718 1.4e-17 94.4 107 53.3
MD06G1049400 Malus domestica HOM05D002897 ORTHO05D008718 8.9e-17 91.7 131 45.0
ATR0059G040 Amborella trichopoda HOM05D002897 ORTHO05D008718 1.5e-16 90.9 93 50.5
CANSAT64G1786 Cannabis sativa HOM05D002897 ORTHO05D008718 2.3e-12 77.0 59 57.6
BolC6t39233H Brassica oleracea HOM05D002897 ORTHO05D008718 6.6e-12 75.5 44 79.5
SMO290G0011 Selaginella moellendorffii HOM05D013342 ORTHO05D008718 4.7e-10 69.3 223 30.5
SMO356G0703 Selaginella moellendorffii HOM05D013342 ORTHO05D008718 4.0e-09 66.2 223 30.5
HPP92_017340 Vanilla planifolia HOM05D002897 ORTHO05D008718 8.3e-07 58.5 109 43.1


User provided reference genes

Program Settings