Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g03860 Schrenkiella parvula HOM05D000172 ORTHO05D008216 4.7e-98 361.3 195 100.0
Thhalv10008833m.g Eutrema salsugineum HOM05D000172 ORTHO05D008216 3.7e-87 325.1 196 86.2
Carub.0001s0423 Capsella rubella HOM05D000172 ORTHO05D008216 1.8e-86 322.8 189 90.5
AL1G14720 Arabidopsis lyrata HOM05D000172 ORTHO05D008216 3.1e-86 322.0 195 89.7
A08p36620 Brassica napus HOM05D001534 ORTHO05D003503 6.1e-82 307.8 192 87.0
BcaC07g36869 Brassica carinata HOM05D001534 ORTHO05D003503 8.0e-82 307.4 193 86.5
BcaB03g13463 Brassica carinata HOM05D000172 ORTHO05D008216 1.4e-81 306.6 198 84.3
BraA08t35564Z Brassica rapa HOM05D001534 ORTHO05D003503 4.0e-81 305.1 196 84.7
CARHR004400 Cardamine hirsuta HOM05D000172 ORTHO05D008216 4.1e-78 295.0 195 85.1
C08p01620 Brassica napus HOM05D001534 ORTHO05D003503 1.0e-73 280.4 190 77.9
BolC8t46965H Brassica oleracea HOM05D001534 ORTHO05D003503 1.0e-73 280.4 190 77.9
THA.LOC104826130 Tarenaya hassleriana HOM05D000172 ORTHO05D008216 3.3e-67 258.8 189 74.1
Duzib138G0791 Durio zibethinus HOM05D000172 ORTHO05D000781 1.1e-57 227.3 154 68.8
Thecc.01G183500 Theobroma cacao HOM05D000172 ORTHO05D008216 1.8e-57 226.5 154 68.2
Gohir.A07G168450 Gossypium hirsutum HOM05D000172 ORTHO05D008216 1.2e-56 223.8 154 69.5
Manes.13G066180 Manihot esculenta HOM05D000172 ORTHO05D008216 2.6e-56 222.6 154 68.8
Atru.chr6.3270 Acer truncatum HOM05D000172 ORTHO05D008216 4.4e-56 221.9 188 59.0
Gohir.D07G174800 Gossypium hirsutum HOM05D000172 ORTHO05D008216 4.4e-56 221.9 154 68.2
Aa31LG1G19790 Aethionema arabicum HOM05D000172 ORTHO05D008216 3.7e-55 218.8 205 64.4
Gorai.001G195500 Gossypium raimondii HOM05D000172 ORTHO05D008216 4.9e-55 218.4 154 67.5
Ciclev10016727m.g Citrus clementina HOM05D000172 ORTHO05D008216 6.4e-55 218.0 177 66.7
CANSAT78G2170 Cannabis sativa HOM05D000172 ORTHO05D000781 5.4e-54 214.9 154 66.2
Atru.chr6.3269 Acer truncatum HOM05D000172 ORTHO05D008216 7.0e-54 214.5 154 66.9
AT1G04985 Arabidopsis thaliana HOM05D000172 ORTHO05D008216 9.2e-54 214.2 126 91.3
Eucgr.K00733 Eucalyptus grandis HOM05D000172 ORTHO05D008216 9.2e-54 214.2 193 62.7
TAR624G1331 Trochodendron aralioides HOM05D000172 ORTHO05D008216 2.0e-53 213.0 188 57.4
Sabra14G0121300 Salix brachista HOM05D000172 ORTHO05D008216 3.5e-53 212.2 193 60.1
CSS0028035 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D000781 4.6e-53 211.8 187 57.8
Cpa.g.sc132.32 Carica papaya HOM05D000172 ORTHO05D008216 1.7e-52 209.9 154 64.9
Nn1g03358 Nelumbo nucifera HOM05D000172 ORTHO05D008216 3.0e-52 209.1 197 54.3
Cfa014307 Carpinus fangiana HOM05D000172 ORTHO05D008216 3.9e-52 208.8 190 61.6
TWI36G0853 Tripterygium wilfordii HOM05D000172 ORTHO05D000781 6.6e-52 208.0 154 64.9
COL.COLO4_06741 Corchorus olitorius HOM05D000172 ORTHO05D008216 8.6e-52 207.6 138 69.6
Potri.014G159600 Populus trichocarpa HOM05D000172 ORTHO05D008216 1.9e-51 206.5 193 59.6
GSVIVG01030516001 Vitis vinifera HOM05D000172 ORTHO05D008216 1.9e-51 206.5 190 58.9
MSTRG.14128 Avicennia marina HOM05D000172 ORTHO05D008216 2.5e-51 206.1 175 61.7
MD09G1115500 Malus domestica HOM05D000172 ORTHO05D000781 3.3e-51 205.7 188 55.9
PGR142G2841 Punica granatum HOM05D000172 ORTHO05D008216 7.3e-51 204.5 188 62.8
MD17G1107300 Malus domestica HOM05D000172 ORTHO05D008216 1.6e-50 203.4 188 56.9
Prupe.3G209000 Prunus persica HOM05D000172 ORTHO05D008216 2.1e-50 203.0 188 55.9
Peaxi162Scf01333g00137 Petunia axillaris HOM05D000172 ORTHO05D008216 3.6e-50 202.2 185 58.4
CAN.G784.10 Capsicum annuum HOM05D000172 ORTHO05D008216 4.7e-50 201.8 197 56.9
Sopen07g024820 Solanum pennellii HOM05D000172 ORTHO05D008216 4.0e-49 198.7 185 58.9
arahy.Tifrunner.gnm1.ann1.EDY71B Arachis hypogaea HOM05D000172 ORTHO05D008216 6.8e-49 198.0 177 62.1
Sed0027341 Sechium edule HOM05D000172 ORTHO05D008216 6.8e-49 198.0 152 62.5
Hma1.2p1_0405F.1_g145530 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 8.9e-49 197.6 188 55.3
PGSC0003DMG400000660 Solanum tuberosum HOM05D000172 ORTHO05D008216 8.9e-49 197.6 185 58.4
Sed0000051 Sechium edule HOM05D000172 ORTHO05D008216 1.2e-48 197.2 152 63.2
Hma1.2p1_2406F.1_g321460 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 1.5e-48 196.8 188 54.8
Nitab4.5_0000130g0110 Nicotiana tabacum HOM05D000172 ORTHO05D008216 1.5e-48 196.8 185 56.8
MBI16_g26181_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D008216 3.4e-48 195.7 154 62.3
Nitab4.5_0010117g0030 Nicotiana tabacum HOM05D000172 ORTHO05D008216 3.4e-48 195.7 185 56.8
SGA_v2.0_scaffold49G18358 Striga asiatica HOM05D000172 ORTHO05D008216 4.4e-48 195.3 190 53.7
Actinidia13731 Actinidia chinensis HOM05D000172 ORTHO05D008216 5.8e-48 194.9 180 53.3
ClCG02G018130 Citrullus lanatus HOM05D000172 ORTHO05D008216 1.7e-47 193.4 152 62.5
Sc12g0002040 Simmondsia chinensis HOM05D000172 ORTHO05D008216 2.2e-47 193.0 194 52.1
EL10Ac9g22821 Beta vulgaris HOM05D000172 ORTHO05D008216 4.9e-47 191.8 201 52.7
LjContig00029g0008644 Lotus japonicus HOM05D000172 ORTHO05D008216 1.4e-46 190.3 155 60.0
Psat2g026560 Pisum sativum HOM05D000172 ORTHO05D008216 1.4e-46 190.3 190 53.2
HanXRQChr04g0126831 Helianthus annuus HOM05D000172 ORTHO05D008216 1.9e-46 189.9 186 51.6
MELO3C019724.2 Cucumis melo HOM05D000172 ORTHO05D008216 5.4e-46 188.3 152 60.5
Lalb_Chr17g0347191 Lupinus albus HOM05D000172 ORTHO05D008216 1.2e-45 187.2 189 58.2
CsaV3_6G015520 Cucumis sativus L. HOM05D000172 ORTHO05D008216 3.5e-45 185.7 152 60.5
Cc05_g02620 Coffea canephora HOM05D000172 ORTHO05D008216 4.6e-45 185.3 158 58.9
TPR.G25655 Trifolium pratense HOM05D000172 ORTHO05D008216 6.0e-45 184.9 155 59.4
Aqoxy1G04174 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 7.8e-45 184.5 177 53.1
Medtr5g084980 Medicago truncatula HOM05D000172 ORTHO05D008216 1.7e-44 183.3 155 61.3
RcHm_v2.0_Chr2g0157891 Rosa chinensis HOM05D000172 ORTHO05D008216 2.3e-44 183.0 193 49.7
Glyma.02G267200 Glycine max HOM05D000172 ORTHO05D008216 3.0e-44 182.6 192 51.6
FvH4_6g41990 Fragaria vesca HOM05D000172 ORTHO05D008216 3.9e-44 182.2 193 49.7
Lsat_1_v5_gn_7_94941 Lactuca sativa HOM05D000172 ORTHO05D008216 5.1e-44 181.8 148 56.1
FAN02G3472 Fragaria x ananassa HOM05D000172 ORTHO05D008216 6.6e-44 181.4 193 50.3
CDE04G1581 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 8.6e-44 181.0 148 59.5
Migut.H01248 Erythranthe guttata HOM05D000172 ORTHO05D008216 8.6e-44 181.0 177 53.1
FAN14G3302 Fragaria x ananassa HOM05D000172 ORTHO05D008216 1.1e-43 180.6 193 49.2
FAN14G3681 Fragaria x ananassa HOM05D000172 ORTHO05D008216 1.1e-43 180.6 193 49.2
Rhsim06G0168800 Rhododendron simsii HOM05D000172 ORTHO05D008216 1.5e-43 180.3 199 49.7
FAN05G3852 Fragaria x ananassa HOM05D000172 ORTHO05D008216 1.9e-43 179.9 197 49.2
Phvul.008G214900 Phaseolus vulgaris HOM05D000172 ORTHO05D008216 3.3e-43 179.1 175 53.1
FAN09G4057 Fragaria x ananassa HOM05D000172 ORTHO05D000781 7.3e-43 177.9 193 49.7
PSO832G3827 Papaver somniferum HOM05D000172 ORTHO05D008216 9.5e-43 177.6 175 52.0
VMungo0647G0578 Vigna mungo HOM05D000172 ORTHO05D008216 9.5e-43 177.6 176 52.3
PSO210G7646 Papaver somniferum HOM05D000172 ORTHO05D008216 4.7e-42 175.3 175 52.0
HPP92_000210 Vanilla planifolia HOM05D000172 ORTHO05D008216 1.1e-41 174.1 147 58.5
HPP92_000219 Vanilla planifolia HOM05D000172 ORTHO05D008216 2.4e-41 172.9 147 57.8
SalBow1G7277 Salvia bowleyana HOM05D000172 ORTHO05D008216 3.4e-40 169.1 184 50.0
SEGI_13182 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 3.4e-40 169.1 155 52.9
unitig_578.g16772 Utricularia gibba HOM05D000172 ORTHO05D008216 2.2e-39 166.4 190 47.9
Os04g0669100 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D008216 4.9e-39 165.2 151 53.0
Solyc07g049470.4 Solanum lycopersicum HOM05D000172 ORTHO05D008216 1.1e-38 164.1 146 61.6
ECA236G1458 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.0e-37 158.3 182 45.6
Zm00001eb066900 Zea mays HOM05D000172 ORTHO05D008216 1.0e-36 157.5 145 51.7
Zm00001eb433230 Zea mays HOM05D000172 ORTHO05D008216 3.9e-36 155.6 147 50.3
Dinv39759 Davidia involucrata HOM05D000172 ORTHO05D008216 2.8e-34 149.4 123 59.3
ATR1128G110 Amborella trichopoda HOM05D000172 ORTHO05D008216 1.1e-33 147.5 122 59.8
QL08p030202 Quercus lobata HOM05D000172 ORTHO05D008216 5.8e-32 141.7 124 58.1
QL93p0185_0050 Quercus lobata HOM05D000172 ORTHO05D008216 7.6e-32 141.4 124 58.1
AUR62015120 Chenopodium quinoa HOM05D000172 ORTHO05D008216 1.7e-31 140.2 122 56.6
SalBow1G5012 Salvia bowleyana HOM05D000172 ORTHO05D008216 8.7e-28 127.9 176 42.6
vmacro12154 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 1.5e-27 127.1 110 55.5
arahy.Tifrunner.gnm1.ann1.YBUA9J Arachis hypogaea HOM05D000172 ORTHO05D008216 6.9e-25 118.2 97 59.8
arahy.Tifrunner.gnm1.ann1.2252MW Arachis hypogaea HOM05D000172 ORTHO05D008216 5.8e-24 115.2 101 57.4
DCAR_019254 Daucus carota HOM05D000172 ORTHO05D008216 9.9e-24 114.4 125 44.8
arahy.Tifrunner.gnm1.ann1.Z24BKS Arachis hypogaea HOM05D000172 ORTHO05D008216 8.4e-23 111.3 102 55.9
arahy.Tifrunner.gnm1.ann1.YE9ADV Arachis hypogaea HOM05D000172 ORTHO05D008216 1.1e-22 110.9 83 65.1
Glyma.14G050300 Glycine max HOM05D000172 ORTHO05D008216 5.4e-22 108.6 128 43.8
Pp3c2_22540 Physcomitrium patens HOM05D000172 ORTHO05D008216 5.4e-22 108.6 126 41.3
DCAR_021132 Daucus carota HOM05D000172 ORTHO05D008216 6.0e-21 105.1 103 55.3
AagrBONN_evm.TU.Sc2ySwM_228.5805 Anthoceros agrestis HOM05D000172 ORTHO05D008216 1.8e-20 103.6 108 45.4
DCAR_021133 Daucus carota HOM05D000172 ORTHO05D008216 1.9e-19 100.1 72 62.5
CiPaw.03G154000 Carya illinoinensis HOM05D000172 ORTHO05D008216 4.3e-19 99.0 150 46.0
Aqoxy1G04172 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 8.1e-18 94.7 92 50.0
arahy.Tifrunner.gnm1.ann1.J9YZDG Arachis hypogaea HOM05D000172 ORTHO05D008216 2.4e-17 93.2 87 55.2
arahy.Tifrunner.gnm1.ann1.R9GX0H Arachis hypogaea HOM05D000172 ORTHO05D008216 2.4e-17 93.2 82 57.3
CDE07G1564 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 5.8e-16 88.6 116 45.7
SMO111G0036 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 9.9e-16 87.8 140 37.9
SMO358G0556 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 9.9e-16 87.8 140 37.9
CBR_g23765 Chara braunii HOM05D000172 ORTHO05D008216 8.4e-15 84.7 109 40.4
SEGI_22849 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 9.3e-14 81.3 62 62.9
Haze_12755 Corylus avellana HOM05D000172 ORTHO05D008216 6.0e-13 78.6 159 39.6
Oeu003064.1 Olea europaea HOM05D000172 ORTHO05D008216 8.7e-12 74.7 68 57.4
vmacro12152 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 8.2e-10 68.2 59 54.2
arahy.Tifrunner.gnm1.ann1.7XK0ZA Arachis hypogaea HOM05D000172 ORTHO05D008216 3.1e-09 66.2 68 45.6
arahy.Tifrunner.gnm1.ann1.J7SF2C Arachis hypogaea HOM05D000172 ORTHO05D008216 5.3e-09 65.5 63 50.8
arahy.Tifrunner.gnm1.ann1.971VLJ Arachis hypogaea HOM05D000172 ORTHO05D008216 9.0e-09 64.7 68 44.1
arahy.Tifrunner.gnm1.ann1.UD09X1 Arachis hypogaea HOM05D000172 ORTHO05D008216 1.2e-08 64.3 63 49.2
DCAR_021134 Daucus carota HOM05D000172 ORTHO05D008216 2.2e-07 60.1 41 63.4
arahy.Tifrunner.gnm1.ann1.XV84RB Arachis hypogaea HOM05D000172 ORTHO05D008216 6.5e-07 58.5 63 44.4


User provided reference genes

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