Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g03770 Schrenkiella parvula HOM05D004925 ORTHO05D005643 1.3e-172 609.8 339 100.0
A10p03360 Brassica napus HOM05D004925 ORTHO05D005643 2.6e-120 436.0 355 73.5
BraA10t42612Z Brassica rapa HOM05D004925 ORTHO05D005643 1.3e-116 423.7 360 71.7
THA.LOC104801020 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 2.4e-97 359.8 296 66.9
C05p03080 Brassica napus HOM05D004925 ORTHO05D005643 3.1e-97 359.4 344 67.2
BolC5t29090H Brassica oleracea HOM05D004925 ORTHO05D005643 7.8e-93 344.7 371 62.3
AT1G04930 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 6.2e-82 308.5 353 55.2
CARHR126790 Cardamine hirsuta HOM05D004925 ORTHO05D005643 6.2e-82 308.5 298 62.1
Aa31LG5G4490 Aethionema arabicum HOM05D004925 ORTHO05D005643 3.1e-81 306.2 343 56.6
AL1G14650 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 1.9e-78 297.0 351 54.4
Thhalv10016920m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 2.5e-78 296.6 298 60.1
AT2G32840 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 9.3e-78 294.7 296 59.8
Sp4g15220 Schrenkiella parvula HOM05D004925 ORTHO05D005643 2.1e-77 293.5 298 59.7
Aa31LG1G19930 Aethionema arabicum HOM05D004925 ORTHO05D005643 3.5e-77 292.7 326 55.8
Carub.0004s1427 Capsella rubella HOM05D004925 ORTHO05D005643 4.6e-77 292.4 269 63.2
AL4G28340 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 4.8e-74 282.3 275 61.8
C04p16720 Brassica napus HOM05D004925 ORTHO05D005643 1.4e-62 244.2 341 49.0
BolC4t23220H Brassica oleracea HOM05D004925 ORTHO05D005643 2.1e-61 240.4 341 49.6
Thhalv10009447m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 3.6e-61 239.6 154 86.4
Thhalv10009331m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 7.9e-61 238.4 195 65.6
A05p12810 Brassica napus HOM05D004925 ORTHO05D005643 3.0e-60 236.5 341 49.6
BcaB02g10501 Brassica carinata HOM05D004925 ORTHO05D005643 4.8e-58 229.2 291 54.3
BraA05t20219Z Brassica rapa HOM05D004925 ORTHO05D005643 5.3e-57 225.7 362 46.1
THA.LOC104816029 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 2.0e-51 207.2 188 61.7
ClCG10G012660 Citrullus lanatus HOM05D004925 ORTHO05D005643 4.8e-50 202.6 297 46.1
BcaB01g00977 Brassica carinata HOM05D004925 ORTHO05D005643 5.3e-49 199.1 279 49.8
CsaV3_3G032460 Cucumis sativus L. HOM05D004925 ORTHO05D005643 4.5e-48 196.1 298 45.0
Dinv43931 Davidia involucrata HOM05D004925 ORTHO05D005643 6.5e-47 192.2 307 44.3
CARHR004330 Cardamine hirsuta HOM05D004925 ORTHO05D005643 3.6e-45 186.4 159 69.8
MELO3C030929.2 Cucumis melo HOM05D004925 ORTHO05D005643 3.3e-43 179.9 351 38.2
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 7.0e-41 172.2 300 43.7
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 7.0e-41 172.2 300 43.7
Cfa004806 Carpinus fangiana HOM05D004925 ORTHO05D005643 9.1e-41 171.8 309 42.4
TWI09G1281 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 1.6e-40 171.0 316 41.5
GSVIVG01001367001 Vitis vinifera HOM05D004925 ORTHO05D005643 7.7e-40 168.7 303 41.6
Dinv43491 Davidia involucrata HOM05D004925 ORTHO05D005643 1.0e-39 168.3 289 42.9
CiPaw.13G000800 Carya illinoinensis HOM05D004925 ORTHO05D005643 1.7e-39 167.5 259 45.6
Hma1.2p1_0860F.1_g229570 Hydrangea macrophylla HOM05D004925 ORTHO05D005643 2.7e-37 160.2 324 40.4
Potri.001G229800 Populus trichocarpa HOM05D004925 ORTHO05D005643 6.1e-37 159.1 304 41.4
Sed0010000 Sechium edule HOM05D004925 ORTHO05D005643 1.0e-36 158.3 285 40.7
TAR623G0394 Trochodendron aralioides HOM05D004925 ORTHO05D005643 1.2e-35 154.8 280 42.1
Nn2g15712 Nelumbo nucifera HOM05D004925 ORTHO05D005643 1.5e-35 154.5 315 40.0
MD07G1002600 Malus domestica HOM05D004925 ORTHO05D005643 2.0e-35 154.1 274 43.8
MD02G1318600 Malus domestica HOM05D004925 ORTHO05D005643 2.2e-34 150.6 274 41.2
TWI73G1095 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 2.2e-34 150.6 297 40.1
TAR369G0809 Trochodendron aralioides HOM05D004925 ORTHO05D005643 4.8e-34 149.4 313 38.7
CANSAT11G0505 Cannabis sativa HOM05D004925 ORTHO05D005643 8.3e-34 148.7 294 39.8
Rhsim01G0134400 Rhododendron simsii HOM05D004925 ORTHO05D005643 8.3e-34 148.7 246 43.5
MSTRG.5000 Avicennia marina HOM05D004925 ORTHO05D005643 7.0e-33 145.6 309 39.8
SalBow4G3044 Salvia bowleyana HOM05D004925 ORTHO05D005643 7.0e-33 145.6 299 40.5
SalBow4G1354 Salvia bowleyana HOM05D004925 ORTHO05D005643 1.6e-32 144.4 299 40.5
Sopen01g033490 Solanum pennellii HOM05D004925 ORTHO05D005643 4.5e-32 142.9 316 37.0
QL04p000066 Quercus lobata HOM05D004925 ORTHO05D005643 7.7e-32 142.1 313 37.4
Solyc01g073920.3 Solanum lycopersicum HOM05D004925 ORTHO05D005643 7.7e-32 142.1 315 36.5
Ca_02951_v3 Cicer arietinum L. HOM05D004925 ORTHO05D005643 1.0e-31 141.7 249 41.0
Peaxi162Scf00878g00036 Petunia axillaris HOM05D004925 ORTHO05D005643 1.7e-31 141.0 291 37.1
Cpa.g.sc189.17 Carica papaya HOM05D004925 ORTHO05D005643 2.2e-31 140.6 155 55.5
Duzib114G0283 Durio zibethinus HOM05D004925 ORTHO05D005643 5.0e-31 139.4 161 50.9
Manes.10G151100 Manihot esculenta HOM05D004925 ORTHO05D005643 6.5e-31 139.0 321 37.1
SGA_v2.0_scaffold95G28775 Striga asiatica HOM05D004925 ORTHO05D005643 6.5e-31 139.0 284 42.6
Gohir.D08G037401 Gossypium hirsutum HOM05D004925 ORTHO05D005643 8.5e-31 138.7 162 53.7
QL04p003160 Quercus lobata HOM05D004925 ORTHO05D005643 1.1e-30 138.3 358 34.6
arahy.Tifrunner.gnm1.ann1.WEBP2W Arachis hypogaea HOM05D004925 ORTHO05D005643 2.5e-30 137.1 251 39.4
Lsat_1_v5_gn_1_110881 Lactuca sativa HOM05D004925 ORTHO05D005643 2.5e-30 137.1 314 37.3
COL.COLO4_25137 Corchorus olitorius HOM05D004925 ORTHO05D005643 3.2e-30 136.7 250 41.6
Gorai.004G035400 Gossypium raimondii HOM05D004925 ORTHO05D005643 4.2e-30 136.3 162 52.5
Thecc.01G416300 Theobroma cacao HOM05D004925 ORTHO05D005643 4.2e-30 136.3 266 40.6
Hund25510 Selenicereus undatus HOM05D004925 ORTHO05D005643 5.5e-30 136.0 307 39.4
Oeu053533.1 Olea europaea HOM05D004925 ORTHO05D005643 1.2e-29 134.8 314 39.2
Migut.N01664 Erythranthe guttata HOM05D004925 ORTHO05D005643 1.6e-29 134.4 257 42.4
Gohir.A08G026720 Gossypium hirsutum HOM05D004925 ORTHO05D005643 1.6e-29 134.4 162 51.9
Cc02_g27070 Coffea canephora HOM05D004925 ORTHO05D005643 2.1e-29 134.0 299 38.8
RcHm_v2.0_Chr1g0313411 Rosa chinensis HOM05D004925 ORTHO05D005643 4.7e-29 132.9 184 46.7
Ciclev10032226m.g Citrus clementina HOM05D004925 ORTHO05D005643 6.1e-29 132.5 307 36.5
Lj3g0011601 Lotus japonicus HOM05D004925 ORTHO05D005643 6.1e-29 132.5 302 37.4
Atru.chr11.2695 Acer truncatum HOM05D004925 ORTHO05D005643 1.0e-28 131.7 257 40.1
FAN01G2076 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.8e-28 131.0 183 47.5
CAN.G261.6 Capsicum annuum HOM05D004925 ORTHO05D005643 3.0e-28 130.2 180 46.1
Sed0003173 Sechium edule HOM05D004925 ORTHO05D005643 3.0e-28 130.2 159 49.7
FAN03G1097 Fragaria x ananassa HOM05D004925 ORTHO05D005643 4.0e-28 129.8 234 42.3
Nitab4.5_0000892g0140 Nicotiana tabacum HOM05D004925 ORTHO05D005643 5.2e-28 129.4 346 33.8
FAN01G0312 Fragaria x ananassa HOM05D004925 ORTHO05D005643 8.8e-28 128.6 244 41.0
ECA248G0029 Erigeron canadensis HOM05D004925 ORTHO05D005643 2.0e-27 127.5 246 39.4
Sc17g0006850 Simmondsia chinensis HOM05D004925 ORTHO05D005643 2.6e-27 127.1 292 37.7
arahy.Tifrunner.gnm1.ann1.BFX48A Arachis hypogaea HOM05D004925 ORTHO05D005643 4.4e-27 126.3 296 37.5
FvH4_7g00160 Fragaria vesca HOM05D004925 ORTHO05D005643 7.5e-27 125.6 150 53.3
FAN06G2494 Fragaria x ananassa HOM05D004925 ORTHO05D005643 7.5e-27 125.6 150 53.3
FAN10G2396 Fragaria x ananassa HOM05D004925 ORTHO05D005643 7.5e-27 125.6 150 53.3
A09p67630 Brassica napus HOM05D004925 ORTHO05D005643 9.8e-27 125.2 108 69.4
Aqoxy1G00133 Aquilegia oxysepala HOM05D004925 ORTHO05D005643 1.7e-26 124.4 253 39.5
Prupe.2G004100 Prunus persica HOM05D004925 ORTHO05D005643 2.8e-26 123.6 288 36.8
Glyma.08G148900 Glycine max HOM05D004925 ORTHO05D005643 3.7e-26 123.2 275 35.6
Actinidia15855 Actinidia chinensis HOM05D004925 ORTHO05D005643 8.3e-26 122.1 267 37.8
Phvul.005G039900 Phaseolus vulgaris HOM05D004925 ORTHO05D005643 1.1e-25 121.7 309 34.6
Lalb_Chr25g0283541 Lupinus albus HOM05D004925 ORTHO05D005643 2.4e-25 120.6 272 39.0
vmacro12585 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 2.4e-25 120.6 295 35.3
HanXRQChr01g0018661 Helianthus annuus HOM05D004925 ORTHO05D005643 4.1e-25 119.8 279 36.2
MBI19_g23208_MAGBIO Magnolia biondii HOM05D004925 ORTHO05D005643 4.1e-25 119.8 304 35.2
Medtr2g060910 Medicago truncatula HOM05D004925 ORTHO05D005643 9.1e-25 118.6 260 35.0
BraA09t42096Z Brassica rapa HOM05D000053 ORTHO05D000035 2.0e-24 117.5 78 79.5
Lalb_Chr03g0033881 Lupinus albus HOM05D004925 ORTHO05D005643 3.8e-23 113.2 135 48.9
PSO384G4128 Papaver somniferum HOM05D004925 ORTHO05D005643 1.5e-22 111.3 306 31.7
Glyma.15G269200 Glycine max HOM05D004925 ORTHO05D005643 1.9e-22 110.9 307 34.2
Eucgr.G03409 Eucalyptus grandis HOM05D004925 ORTHO05D005643 1.2e-21 108.2 168 44.6
HanXRQChr11g0341641 Helianthus annuus HOM05D004925 ORTHO05D005643 2.1e-21 107.5 138 50.0
HanXRQChr11g0341871 Helianthus annuus HOM05D004925 ORTHO05D005643 4.7e-21 106.3 138 50.0
Oeu024926.1 Olea europaea HOM05D004925 ORTHO05D005643 1.0e-20 105.1 402 29.4
unitig_22.g5889 Utricularia gibba HOM05D004925 ORTHO05D005643 1.0e-20 105.1 305 34.8
TPR.G11699 Trifolium pratense HOM05D004925 ORTHO05D005643 2.3e-20 104.0 122 50.0
vmacro21158 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 3.0e-20 103.6 301 32.6
PGR119G0958 Punica granatum HOM05D004925 ORTHO05D005643 1.5e-19 101.3 221 35.3
HanXRQChr11g0341651 Helianthus annuus HOM05D004925 ORTHO05D005643 2.0e-19 100.9 128 51.6
SGA_v2.0_scaffold4G02236 Striga asiatica HOM05D001227 ORTHO05D001082 1.3e-18 98.2 281 33.8
BcaB03g16451 Brassica carinata HOM05D004925 ORTHO05D005643 1.7e-18 97.8 86 64.0
CDE04G0753 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 4.9e-18 96.3 290 32.1
Actinidia21578 Actinidia chinensis HOM05D004925 ORTHO05D005643 6.3e-18 95.9 155 43.9
Medtr4g125960 Medicago truncatula HOM05D004925 ORTHO05D005643 6.3e-18 95.9 262 34.4
PSO339G6120 Papaver somniferum HOM05D004925 ORTHO05D005643 1.8e-17 94.4 253 34.0
BcaB03g16450 Brassica carinata HOM05D000563 ORTHO05D005643 3.2e-17 93.6 90 58.9
BcaB03g16455 Brassica carinata HOM05D004489 ORTHO05D005643 1.6e-16 91.3 84 61.9
vmacro21156 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 2.7e-16 90.5 280 31.8
HPP92_020314 Vanilla planifolia HOM05D004925 ORTHO05D005643 2.5e-14 84.0 148 41.2
SEGI_38326 Sequoiadendron giganteum HOM05D004925 ORTHO05D005643 3.3e-14 83.6 184 38.0
Zm00001eb399260 Zea mays HOM05D004925 ORTHO05D005643 1.4e-12 78.2 263 29.3
Rhsim06G0015600 Rhododendron simsii HOM05D004925 ORTHO05D005643 2.3e-12 77.4 290 29.3
Nitab4.5_0005278g0010 Nicotiana tabacum HOM05D004925 ORTHO05D005643 8.9e-12 75.5 270 31.1
AUR62015612 Chenopodium quinoa HOM05D004925 ORTHO05D005643 1.2e-11 75.1 133 41.4
Sabra16G0137200 Salix brachista HOM05D004925 ORTHO05D005643 1.5e-11 74.7 82 56.1
Pp3c22_21740 Physcomitrium patens HOM05D004925 ORTHO05D005643 5.8e-11 72.8 185 34.6
vmacro21157 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 5.8e-11 72.8 325 27.4
CDE06G1226 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 1.7e-10 71.2 305 29.2
HanXRQChr11g0341671 Helianthus annuus HOM05D004925 ORTHO05D005643 1.4e-09 68.2 85 54.1
EL10Ac8g20283 Beta vulgaris HOM05D004925 ORTHO05D005643 1.9e-09 67.8 261 31.0
Lj7A564G31 Lonicera japonica HOM05D004925 ORTHO05D005643 4.1e-09 66.6 73 47.9
ATR0598G164 Amborella trichopoda HOM05D004925 ORTHO05D005643 7.0e-09 65.9 274 29.9
Mapoly0040s0118 Marchantia polymorpha HOM05D004925 ORTHO05D005643 7.8e-08 62.4 295 28.1
CSS0015862 Camellia sinensis var. sinensis HOM05D004925 ORTHO05D005643 1.3e-07 61.6 137 38.0
SMO137G0159 Selaginella moellendorffii HOM05D004925 ORTHO05D005643 6.6e-07 59.3 263 29.7
Oeu013586.1 Olea europaea HOM05D004925 ORTHO05D005643 8.6e-07 58.9 90 43.3
Haze_10406 Corylus avellana HOM05D004925 ORTHO05D005643 2.5e-06 57.4 64 53.1
Sabra16G0137500 Salix brachista HOM05D004925 ORTHO05D005643 5.6e-06 56.2 189 31.7
BcaB03g16453 Brassica carinata HOM05D004925 ORTHO05D005643 9.5e-06 55.5 66 53.0


User provided reference genes

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