Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 0.0e+00 1417.9 735 100.0
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 0.0e+00 1315.8 735 91.3
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 0.0e+00 1313.9 736 90.8
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 0.0e+00 1307.4 737 90.6
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 0.0e+00 1291.6 741 89.3
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 0.0e+00 1289.6 738 89.3
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 0.0e+00 1288.9 738 89.3
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 0.0e+00 1288.9 738 89.2
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 0.0e+00 1278.5 736 89.8
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 0.0e+00 1273.1 736 88.9
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 0.0e+00 1255.4 758 86.1
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 0.0e+00 1235.7 735 85.9
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 0.0e+00 1214.1 750 85.1
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 0.0e+00 1211.4 753 85.0
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 0.0e+00 1184.5 738 81.8
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 0.0e+00 1082.0 742 79.1
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 0.0e+00 1081.6 615 91.2
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 1.4e-301 1039.3 713 74.5
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 7.9e-300 1033.5 708 73.6
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 1.3e-297 1026.2 710 72.8
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 1.6e-295 1019.2 713 72.8
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 2.0e-295 1018.8 703 73.7
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 3.5e-295 1018.1 736 70.8
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 3.5e-295 1018.1 712 71.9
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.0e-294 1016.5 685 75.8
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 3.2e-293 1011.5 712 71.9
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 2.1e-292 1008.8 709 71.2
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 4.7e-292 1007.7 704 71.7
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 2.2e-289 998.8 710 71.5
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 2.7e-287 991.9 711 70.9
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 1.5e-285 986.1 707 70.4
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 4.2e-285 984.6 713 71.2
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 1.2e-284 983.0 707 71.4
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 4.7e-284 981.1 716 69.7
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 5.2e-283 977.6 708 69.5
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.0e-282 975.7 708 69.2
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.8e-280 969.1 708 68.6
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 7.0e-280 967.2 710 69.4
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 3.5e-279 964.9 713 70.0
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 7.7e-279 963.8 709 68.5
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 6.5e-278 960.7 709 69.5
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 1.1e-277 959.9 712 68.5
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 2.5e-277 958.7 709 69.3
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 2.1e-276 955.7 714 68.8
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 3.6e-276 954.9 708 68.2
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 4.7e-276 954.5 711 67.8
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 9.8e-274 946.8 708 67.8
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.7e-273 946.0 705 67.9
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 1.1e-272 943.3 712 67.6
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 3.5e-271 938.3 713 68.7
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 4.5e-271 937.9 708 67.2
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 5.9e-271 937.6 696 68.2
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 7.8e-271 937.2 657 72.1
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 2.3e-270 935.6 714 68.5
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 1.2e-268 929.9 735 66.4
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 4.7e-268 927.9 729 66.7
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 6.1e-268 927.5 653 72.9
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 1.0e-267 926.8 739 65.4
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 2.9e-265 918.7 697 68.3
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 1.8e-264 916.0 716 64.4
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 1.8e-264 916.0 700 66.3
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 3.2e-264 915.2 711 67.1
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 4.1e-264 914.8 704 65.9
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 5.4e-264 914.4 719 66.3
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 5.9e-263 911.0 710 66.3
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 2.3e-262 909.1 710 65.5
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 3.0e-262 908.7 712 65.4
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 3.0e-262 908.7 710 66.5
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 3.9e-262 908.3 698 66.5
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 1.5e-261 906.4 709 65.6
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 3.3e-261 905.2 712 65.6
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 4.3e-261 904.8 785 61.5
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 2.1e-260 902.5 704 65.2
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 8.0e-260 900.6 716 64.8
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 1.1e-259 900.2 711 65.4
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 1.1e-259 900.2 704 64.9
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 3.1e-259 898.7 714 64.7
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 3.1e-259 898.7 713 64.9
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 4.0e-259 898.3 713 65.4
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 4.0e-259 898.3 704 65.1
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 6.8e-259 897.5 699 66.2
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 1.5e-258 896.3 707 65.2
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 2.0e-258 896.0 705 66.5
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 2.6e-258 895.6 681 68.1
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 3.4e-258 895.2 698 65.6
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 1.7e-257 892.9 698 66.8
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 2.4e-256 889.0 711 64.8
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 5.4e-256 887.9 735 63.5
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 2.3e-254 882.5 712 63.6
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 1.5e-253 879.8 721 64.1
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 3.3e-253 878.6 720 64.2
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 6.8e-251 870.9 683 64.9
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 1.5e-250 869.8 704 62.9
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 1.5e-250 869.8 707 63.5
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 3.4e-250 868.6 718 62.0
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 9.9e-250 867.1 697 64.4
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 2.9e-249 865.5 708 62.3
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 8.3e-249 864.0 719 62.9
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 1.9e-248 862.8 710 63.0
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 5.4e-248 861.3 707 62.4
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 2.1e-247 859.4 708 64.3
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 3.3e-245 852.0 699 63.4
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 6.2e-244 847.8 712 62.1
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 1.2e-242 843.6 705 61.3
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 2.4e-240 835.9 698 60.5
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 8.7e-238 827.4 643 66.6
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 1.5e-237 826.6 705 60.7
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 2.5e-237 825.9 705 61.0
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 2.1e-236 822.8 716 60.8
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 2.1e-236 822.8 697 61.7
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 4.7e-236 821.6 698 59.9
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 5.2e-235 818.1 701 61.1
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 1.2e-234 817.0 675 62.7
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 8.4e-233 810.8 705 61.0
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 2.0e-218 763.1 709 57.3
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 5.8e-218 761.5 562 70.5
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 9.9e-218 760.8 614 66.0
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 1.4e-216 756.9 717 56.6
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 1.2e-210 737.3 712 54.4
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 4.5e-210 735.3 657 60.7
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 1.1e-200 704.1 707 55.0
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.9e-193 679.5 553 65.6
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 7.2e-192 674.9 574 62.4
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 7.0e-187 658.3 715 51.0
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.9e-184 650.2 567 61.6
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 9.4e-184 647.9 579 59.9
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 2.1e-183 646.7 662 53.5
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 1.8e-174 617.1 501 63.3
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 1.3e-172 610.9 699 50.1
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 1.9e-160 570.5 710 46.6
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 1.1e-142 511.5 324 83.0
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 5.4e-139 499.2 581 49.9
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 1.3e-137 494.6 875 38.3
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 9.5e-136 488.4 333 72.7
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 1.6e-119 434.5 454 54.6
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 5.8e-101 372.9 263 71.5
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 1.2e-98 365.2 290 68.6
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 4.3e-96 356.7 262 69.5
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 1.0e-92 345.5 367 50.7
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 7.4e-80 302.8 363 52.9
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 5.0e-76 290.0 328 54.0
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 1.1e-70 272.3 503 36.2
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 8.0e-58 229.6 546 33.9
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 1.7e-52 211.8 128 83.6
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 6.8e-49 199.9 125 81.6
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.8e-47 194.5 123 74.8
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.4e-46 192.2 187 55.1
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 9.8e-40 169.5 123 72.4
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 2.1e-34 151.8 139 59.0
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 1.9e-30 138.7 177 42.9
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 1.3e-28 132.5 175 44.6
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 1.6e-21 109.0 323 31.0
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 1.7e-15 89.0 122 45.1
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 2.2e-15 88.6 58 72.4
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 2.9e-15 88.2 52 78.8
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.2e-14 84.7 53 69.8
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.2e-14 84.7 53 69.8
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 3.9e-12 77.8 82 52.4
HPP92_015629 Vanilla planifolia HOM05D004359 ORTHO05D005052 3.3e-11 74.7 87 43.7
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 2.8e-10 71.6 83 42.2
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 4.7e-10 70.9 58 63.8
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 2.2e-07 62.0 37 81.1


User provided reference genes

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