Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g03010 Schrenkiella parvula HOM05D006451 ORTHO05D007680 4.3e-160 568.2 336 100.0
Thhalv10008141m.g Eutrema salsugineum HOM05D006451 ORTHO05D007680 2.5e-152 542.3 337 95.5
A08p37070 Brassica napus HOM05D006451 ORTHO05D007680 6.7e-145 517.7 338 81.4
Aa31LG1G20650 Aethionema arabicum HOM05D006451 ORTHO05D007680 2.5e-144 515.8 335 90.7
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 3.7e-143 511.9 333 81.1
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 3.7e-143 511.9 333 81.1
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 6.3e-143 511.1 333 81.4
BraA08t35607Z Brassica rapa HOM05D006451 ORTHO05D007680 1.1e-142 510.4 333 80.8
AL1G13790 Arabidopsis lyrata HOM05D006451 ORTHO05D007680 1.2e-141 506.9 327 93.0
Carub.0001s0338 Capsella rubella HOM05D006451 ORTHO05D007680 3.4e-141 505.4 332 92.2
CARHR003520 Cardamine hirsuta HOM05D006451 ORTHO05D007680 3.4e-141 505.4 332 91.6
AT1G04190 Arabidopsis thaliana HOM05D006451 ORTHO05D007680 1.1e-139 500.4 327 92.4
BcaC07g42200 Brassica carinata HOM05D006451 ORTHO05D007680 1.1e-139 500.4 346 78.0
THA.LOC104826059 Tarenaya hassleriana HOM05D006451 ORTHO05D007680 1.4e-134 483.4 335 74.0
THA.LOC104801113 Tarenaya hassleriana HOM05D006451 ORTHO05D007680 2.0e-133 479.6 332 85.8
Thecc.04G237100 Theobroma cacao HOM05D006451 ORTHO05D007680 2.2e-124 449.5 335 69.6
COL.COLO4_21546 Corchorus olitorius HOM05D006451 ORTHO05D007680 4.2e-123 445.3 335 69.6
Manes.15G032000 Manihot esculenta HOM05D006451 ORTHO05D007680 7.2e-123 444.5 326 70.9
Atru.chr4.2375 Acer truncatum HOM05D006451 ORTHO05D007680 1.4e-121 440.3 315 70.5
CANSAT78G2142 Cannabis sativa HOM05D006451 ORTHO05D007680 1.8e-121 439.9 336 67.9
Potri.008G156500 Populus trichocarpa HOM05D006451 ORTHO05D007680 5.2e-121 438.3 330 69.4
TWI09G1365 Tripterygium wilfordii HOM05D006451 ORTHO05D007680 1.2e-120 437.2 330 69.4
CiPaw.01G196900 Carya illinoinensis HOM05D006451 ORTHO05D007680 1.5e-120 436.8 325 68.9
Atru.chr4.2399 Acer truncatum HOM05D006451 ORTHO05D007680 2.0e-120 436.4 315 69.8
Duzib052G1229 Durio zibethinus HOM05D006451 ORTHO05D007680 2.0e-120 436.4 335 67.2
Gohir.A01G023900 Gossypium hirsutum HOM05D006451 ORTHO05D007680 2.6e-120 436.0 335 68.4
Potri.010G082900 Populus trichocarpa HOM05D006451 ORTHO05D007680 4.4e-120 435.3 330 68.8
Gorai.002G024400 Gossypium raimondii HOM05D006451 ORTHO05D007680 5.7e-120 434.9 335 68.4
Gohir.D01G021900 Gossypium hirsutum HOM05D006451 ORTHO05D007680 1.3e-119 433.7 335 68.1
QL06p001354 Quercus lobata HOM05D006451 ORTHO05D007680 2.8e-119 432.6 314 68.8
Manes.03G174100 Manihot esculenta HOM05D006451 ORTHO05D007680 4.8e-119 431.8 329 67.8
Sabra10G0060200 Salix brachista HOM05D006451 ORTHO05D007680 7.0e-118 427.9 330 67.3
Solyc09g082540.3 Solanum lycopersicum HOM05D006451 ORTHO05D007680 7.0e-118 427.9 311 70.1
Ciclev10005444m.g Citrus clementina HOM05D006451 ORTHO05D007680 9.1e-118 427.6 315 67.9
Prupe.1G019800 Prunus persica HOM05D006451 ORTHO05D007680 1.2e-117 427.2 323 67.5
Sopen09g031400 Solanum pennellii HOM05D006451 ORTHO05D007680 1.6e-117 426.8 311 69.8
TAR362G1293 Trochodendron aralioides HOM05D006451 ORTHO05D007680 1.6e-117 426.8 325 65.8
Cc03_g04170 Coffea canephora HOM05D006451 ORTHO05D007680 2.0e-117 426.4 310 69.7
GSVIVG01018026001 Vitis vinifera HOM05D006451 ORTHO05D007680 2.7e-117 426.0 324 68.2
Glyma.02G004400 Glycine max HOM05D006451 ORTHO05D007680 4.5e-117 425.2 313 68.4
CSS0023735 Camellia sinensis var. sinensis HOM05D006451 ORTHO05D007680 1.7e-116 423.3 316 68.0
Lj6g0024617 Lotus japonicus HOM05D006451 ORTHO05D007680 2.2e-116 422.9 312 68.6
PGSC0003DMG402007686 Solanum tuberosum HOM05D006451 ORTHO05D007680 2.9e-116 422.5 310 69.4
CAN.G1402.12 Capsicum annuum HOM05D006451 ORTHO05D007680 5.0e-116 421.8 310 68.7
CsaV3_2G013500 Cucumis sativus L. HOM05D006451 ORTHO05D007680 8.5e-116 421.0 332 64.5
Glyma.10G003800 Glycine max HOM05D006451 ORTHO05D007680 1.1e-115 420.6 310 68.1
Duzib151G0283 Durio zibethinus HOM05D006451 ORTHO05D007680 1.5e-115 420.2 329 67.2
Oeu058962.1 Olea europaea HOM05D006451 ORTHO05D007680 1.5e-115 420.2 308 68.8
Sabra08G0119100 Salix brachista HOM05D006451 ORTHO05D007680 2.5e-115 419.5 330 67.3
MD13G1198100 Malus domestica HOM05D006451 ORTHO05D007680 5.5e-115 418.3 323 66.3
Ca_12151_v3 Cicer arietinum L. HOM05D006451 ORTHO05D007680 7.2e-115 417.9 319 66.8
MELO3C014291.2 Cucumis melo HOM05D006451 ORTHO05D007680 9.4e-115 417.5 332 63.9
Aqoxy2G03443 Aquilegia oxysepala HOM05D006451 ORTHO05D007680 4.7e-114 415.2 324 65.4
Psat6g104120 Pisum sativum HOM05D006451 ORTHO05D007680 4.7e-114 415.2 319 66.1
Medtr1g041435 Medicago truncatula HOM05D006451 ORTHO05D007680 6.1e-114 414.8 319 66.5
Actinidia08470 Actinidia chinensis HOM05D006451 ORTHO05D007680 8.0e-114 414.5 310 66.8
MSTRG.4055 Avicennia marina HOM05D006451 ORTHO05D007680 8.0e-114 414.5 310 67.4
MD16G1198200 Malus domestica HOM05D006451 ORTHO05D007680 8.0e-114 414.5 323 66.6
Sed0026394 Sechium edule HOM05D006451 ORTHO05D007680 1.4e-113 413.7 327 65.1
AUR62034703 Chenopodium quinoa HOM05D006451 ORTHO05D007680 8.8e-113 411.0 320 65.9
Sc25g0004270 Simmondsia chinensis HOM05D006451 ORTHO05D007680 8.8e-113 411.0 315 63.8
Phvul.007G277400 Phaseolus vulgaris HOM05D006451 ORTHO05D007680 1.2e-112 410.6 319 65.8
ClCG06G006410 Citrullus lanatus HOM05D006451 ORTHO05D007680 3.4e-112 409.1 341 62.5
PSO210G4482 Papaver somniferum HOM05D006451 ORTHO05D007680 3.4e-112 409.1 316 65.2
Nitab4.5_0000085g0050 Nicotiana tabacum HOM05D006451 ORTHO05D007680 4.4e-112 408.7 312 67.6
Lalb_Chr01g0020941 Lupinus albus HOM05D006451 ORTHO05D007680 5.7e-112 408.3 319 65.5
FvH4_4g00880 Fragaria vesca HOM05D006451 ORTHO05D007680 1.7e-111 406.8 314 66.6
PSO170G5536 Papaver somniferum HOM05D006451 ORTHO05D007680 2.8e-111 406.0 316 64.6
VMungo0720G2899 Vigna mungo HOM05D006451 ORTHO05D007680 2.8e-111 406.0 309 67.6
PGR004G2173 Punica granatum HOM05D006451 ORTHO05D007680 5.4e-110 401.7 309 66.7
AUR62043956 Chenopodium quinoa HOM05D006451 ORTHO05D007680 1.2e-109 400.6 320 64.7
ECA248G3783 Erigeron canadensis HOM05D006451 ORTHO05D007680 2.7e-109 399.4 307 64.8
RcHm_v2.0_Chr4g0387501 Rosa chinensis HOM05D006451 ORTHO05D007680 1.3e-108 397.1 324 64.2
Peaxi162Scf00520g00039 Petunia axillaris HOM05D006451 ORTHO05D007680 1.1e-107 394.0 292 69.5
HanXRQChr11g0342781 Helianthus annuus HOM05D006451 ORTHO05D007680 3.3e-107 392.5 311 64.3
Lsat_1_v5_gn_1_112581 Lactuca sativa HOM05D006451 ORTHO05D007680 2.8e-106 389.4 299 65.2
Zm00001eb031280 Zea mays HOM05D006451 ORTHO05D007680 3.6e-106 389.0 321 62.0
Rhsim02G0028200 Rhododendron simsii HOM05D006451 ORTHO05D007680 1.4e-105 387.1 322 62.4
CDE10G0543 Ceratophyllum demersum HOM05D006451 ORTHO05D007680 3.0e-105 386.0 332 61.1
CSS0014602 Camellia sinensis var. sinensis HOM05D006451 ORTHO05D007680 6.8e-105 384.8 316 63.6
Nitab4.5_0003249g0030 Nicotiana tabacum HOM05D006451 ORTHO05D007680 5.7e-104 381.7 291 68.4
Lj6A610G48 Lonicera japonica HOM05D006451 ORTHO05D007680 7.5e-104 381.3 297 66.7
arahy.Tifrunner.gnm1.ann1.E7JLC4 Arachis hypogaea HOM05D006451 ORTHO05D007680 9.8e-104 380.9 409 52.6
FAN22G0671 Fragaria x ananassa HOM05D006451 ORTHO05D007680 1.3e-103 380.6 346 59.5
Os12g0604800 Oryza sativa ssp. japonica HOM05D006451 ORTHO05D007680 1.7e-103 380.2 307 61.2
HPP92_001912 Vanilla planifolia HOM05D006451 ORTHO05D007680 4.9e-103 378.6 326 60.1
Haze_11218 Corylus avellana HOM05D006451 ORTHO05D007680 1.1e-102 377.5 333 61.6
CDE10G0598 Ceratophyllum demersum HOM05D006451 ORTHO05D007680 1.4e-102 377.1 330 60.0
EL10Ac3g06461 Beta vulgaris HOM05D006451 ORTHO05D007680 1.6e-101 373.6 394 52.3
SGA_v2.0_scaffold191G40453 Striga asiatica HOM05D006451 ORTHO05D007680 1.6e-101 373.6 296 64.9
FAN17G1940 Fragaria x ananassa HOM05D006451 ORTHO05D007680 2.9e-100 369.4 358 57.3
Ah.07g204140 Amaranthus hybridus HOM05D006451 ORTHO05D007680 1.5e-99 367.1 329 58.7
vmacro15365 Vaccinium macrocarpon HOM05D006451 ORTHO05D007680 8.9e-97 357.8 270 66.3
Migut.G00375 Erythranthe guttata HOM05D006451 ORTHO05D007680 7.5e-96 354.8 298 62.1
Nn6g34139 Nelumbo nucifera HOM05D006451 ORTHO05D007680 2.9e-95 352.8 335 57.6
ATR0665G102 Amborella trichopoda HOM05D006451 ORTHO05D007680 1.9e-94 350.1 324 57.1
Cfa008457 Carpinus fangiana HOM05D006451 ORTHO05D007680 2.7e-93 346.3 209 78.5
Dinv44567 Davidia involucrata HOM05D006451 ORTHO05D007680 1.0e-92 344.4 208 78.4
unitig_899.g14873 Utricularia gibba HOM05D006451 ORTHO05D007680 3.9e-92 342.4 331 56.8
Eucgr.H03421 Eucalyptus grandis HOM05D006451 ORTHO05D007680 3.4e-88 329.3 214 72.4
arahy.Tifrunner.gnm1.ann1.9LTU7I Arachis hypogaea HOM05D006451 ORTHO05D007680 4.0e-81 305.8 170 83.5
arahy.Tifrunner.gnm1.ann1.D3KIH0 Arachis hypogaea HOM05D006451 ORTHO05D007680 4.0e-81 305.8 170 83.5
DCAR_027237 Daucus carota HOM05D006451 ORTHO05D007680 3.2e-78 296.2 248 64.9
FAN12G3362 Fragaria x ananassa HOM05D006451 ORTHO05D007680 4.6e-77 292.4 246 65.0
TPR.G25159 Trifolium pratense HOM05D006451 ORTHO05D007680 3.8e-71 272.7 233 62.7
Mapoly0182s0013 Marchantia polymorpha HOM05D006451 ORTHO05D007680 1.3e-66 257.7 314 45.5
SalBow2G3248 Salvia bowleyana HOM05D006451 ORTHO05D007680 2.1e-61 240.4 144 72.9
CBR_g18988 Chara braunii HOM05D006451 ORTHO05D007680 9.3e-46 188.3 318 35.8
SMO348G0048 Selaginella moellendorffii HOM05D006451 ORTHO05D007680 1.5e-43 181.0 210 44.8
Haze_11222 Corylus avellana HOM05D006451 ORTHO05D007680 7.4e-43 178.7 322 40.1
AagrBONN_evm.TU.Sc2ySwM_362.195 Anthoceros agrestis HOM05D006451 ORTHO05D007680 2.7e-37 160.2 192 42.2
arahy.Tifrunner.gnm1.ann1.1SA9RR Arachis hypogaea HOM05D006451 ORTHO05D007680 1.2e-29 134.8 156 51.9
arahy.Tifrunner.gnm1.ann1.45YQSM Arachis hypogaea HOM05D006451 ORTHO05D007680 7.4e-27 125.6 151 51.0
arahy.Tifrunner.gnm1.ann1.Q3A75N Arachis hypogaea HOM05D006451 ORTHO05D007680 7.4e-27 125.6 151 51.0
FAN12G0848 Fragaria x ananassa HOM05D006451 ORTHO05D007680 4.1e-25 119.8 75 68.0
Cpa.g.sc44.112 Carica papaya HOM05D006451 ORTHO05D007680 7.2e-22 109.0 62 91.9
Cre02.g106850 Chlamydomonas reinhardtii HOM05D006451 ORTHO05D007680 7.7e-16 89.0 295 37.6
AL1G13750 Arabidopsis lyrata HOM05D000259 ORTHO05D000155 8.5e-15 85.5 56 82.1
Pp3c17_1530 Physcomitrium patens HOM05D006451 ORTHO05D007680 4.7e-13 79.7 153 37.9
PGSC0003DMG401007686 Solanum tuberosum HOM05D006451 ORTHO05D007680 9.7e-11 72.0 40 87.5
vmacro13396 Vaccinium macrocarpon HOM05D006451 ORTHO05D007680 3.7e-10 70.1 46 73.9
Actinidia18533 Actinidia chinensis HOM05D006451 ORTHO05D007680 1.6e-08 64.7 57 59.6
PRCOL_00005325 Prasinoderma coloniale HOM05D006451 ORTHO05D007680 3.5e-08 63.5 68 55.9
SEGI_25674 Sequoiadendron giganteum HOM05D006451 ORTHO05D007680 4.5e-08 63.2 38 78.9
Nitab4.5_0004059g0030 Nicotiana tabacum HOM05D002462 ORTHO05D002893 2.2e-07 60.8 57 56.1
Migut.A00861 Erythranthe guttata HOM05D002462 ORTHO05D002893 2.9e-07 60.5 57 57.9
SGA_v2.0_scaffold120G32841 Striga asiatica HOM05D002462 ORTHO05D002893 6.5e-07 59.3 57 56.1
TWI14G0736 Tripterygium wilfordii HOM05D000868 ORTHO05D000711 6.5e-07 59.3 71 47.9
BcaB08g37206 Brassica carinata HOM05D001310 ORTHO05D001283 8.5e-07 58.9 73 45.2
SalBow6G5274 Salvia bowleyana HOM05D002462 ORTHO05D002893 8.5e-07 58.9 57 54.4
PGSC0003DMG400012480 Solanum tuberosum HOM05D002462 ORTHO05D002893 8.5e-07 58.9 60 51.7
Cre03.g189950 Chlamydomonas reinhardtii HOM05D002462 ORTHO05D002893 1.5e-06 58.2 56 51.8
Os02g0644100 Oryza sativa ssp. japonica HOM05D002462 ORTHO05D002893 1.9e-06 57.8 57 56.1
Os02g0754500 Oryza sativa ssp. japonica HOM05D001310 ORTHO05D001283 1.9e-06 57.8 60 51.7
TWI59G0850 Tripterygium wilfordii HOM05D000868 ORTHO05D000711 1.9e-06 57.8 71 47.9
CAN.G843.55 Capsicum annuum HOM05D001310 ORTHO05D001283 3.2e-06 57.0 78 44.9
Cfa012782 Carpinus fangiana HOM05D002462 ORTHO05D002893 3.2e-06 57.0 57 54.4
Haze_08589 Corylus avellana HOM05D002462 ORTHO05D002893 3.2e-06 57.0 55 54.5
ECA240G0103 Erigeron canadensis HOM05D001310 ORTHO05D001283 3.2e-06 57.0 59 49.2
Prupe.5G076500 Prunus persica HOM05D002462 ORTHO05D002893 3.2e-06 57.0 57 52.6
Haze_26906 Corylus avellana HOM05D002462 ORTHO05D002893 4.2e-06 56.6 63 50.8
FAN13G2361 Fragaria x ananassa HOM05D001310 ORTHO05D001283 4.2e-06 56.6 74 44.6
HanXRQChr03g0067581 Helianthus annuus HOM05D001310 ORTHO05D001283 4.2e-06 56.6 50 58.0
PSO541G4490 Papaver somniferum HOM05D000868 ORTHO05D000711 4.2e-06 56.6 54 46.3
PSO675G1165 Papaver somniferum HOM05D000868 ORTHO05D000711 4.2e-06 56.6 54 46.3
PRCOL_00004439 Prasinoderma coloniale HOM05D001789 ORTHO05D001755 4.2e-06 56.6 56 53.6
Sp6g33910 Schrenkiella parvula HOM05D001310 ORTHO05D001283 4.2e-06 56.6 73 43.8
COL.COLO4_33570 Corchorus olitorius HOM05D000868 ORTHO05D000711 5.5e-06 56.2 70 47.1
Hma1.2p1_1868F.1_g306000 Hydrangea macrophylla HOM05D002462 ORTHO05D002893 5.5e-06 56.2 57 50.9
Hma1.2p1_2244F.1_g317950 Hydrangea macrophylla HOM05D002462 ORTHO05D002893 5.5e-06 56.2 57 50.9
MD04G1081900 Malus domestica HOM05D002462 ORTHO05D002893 5.5e-06 56.2 55 54.5
Oeu046164.2 Olea europaea HOM05D001310 ORTHO05D001283 5.5e-06 56.2 70 48.6
Sed0008444 Sechium edule HOM05D002462 ORTHO05D002893 5.5e-06 56.2 57 52.6
A10p27860 Brassica napus HOM05D001310 ORTHO05D001283 7.2e-06 55.8 73 43.8
Cpa.g.sc29.105 Carica papaya HOM05D002462 ORTHO05D002893 7.2e-06 55.8 57 50.9
CBR_g36926 Chara braunii HOM05D001310 ORTHO05D001283 7.2e-06 55.8 63 46.0
Lsat_1_v5_gn_9_117041 Lactuca sativa HOM05D001310 ORTHO05D001283 7.2e-06 55.8 59 50.8
Rhsim08G0126200 Rhododendron simsii HOM05D001310 ORTHO05D001283 7.2e-06 55.8 77 40.3
Actinidia28137 Actinidia chinensis HOM05D001310 ORTHO05D001283 9.4e-06 55.5 75 44.0
C04p03740 Brassica napus HOM05D000868 ORTHO05D000711 9.4e-06 55.5 76 43.4
Glyma.05G055600 Glycine max HOM05D002462 ORTHO05D002893 9.4e-06 55.5 57 52.6
PRCOL_00004674 Prasinoderma coloniale HOM05D000115 ORTHO05D005317 9.4e-06 55.5 62 50.0
Zm00001eb186100 Zea mays HOM05D002462 ORTHO05D002893 9.4e-06 55.5 57 54.4
Zm00001eb248730 Zea mays HOM05D002462 ORTHO05D002893 9.4e-06 55.5 57 54.4


User provided reference genes

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