Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g02590 Schrenkiella parvula HOM05D003772 ORTHO05D004509 5.2e-85 317.8 172 100.0
Thhalv10008772m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 2.8e-78 295.4 170 95.3
AL1G13270 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 8.9e-77 290.4 170 93.5
AT1G03730 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 2.6e-76 288.9 168 93.5
Carub.0001s0283 Capsella rubella HOM05D003772 ORTHO05D004509 3.4e-76 288.5 170 92.9
BcaC07g42237 Brassica carinata HOM05D003772 ORTHO05D004509 4.9e-75 284.6 167 94.6
C08p52680 Brassica napus HOM05D003772 ORTHO05D004509 4.9e-75 284.6 167 94.6
BolC8t52794H Brassica oleracea HOM05D003772 ORTHO05D004509 4.9e-75 284.6 167 94.6
BcaC07g42231 Brassica carinata HOM05D003772 ORTHO05D004509 6.4e-75 284.3 168 94.0
BcaC07g42232 Brassica carinata HOM05D003772 ORTHO05D004509 6.4e-75 284.3 168 94.0
A09p68240 Brassica napus HOM05D003772 ORTHO05D004509 1.1e-74 283.5 167 94.0
BraA09t42159Z Brassica rapa HOM05D003772 ORTHO05D004509 1.1e-74 283.5 167 94.0
CARHR003060 Cardamine hirsuta HOM05D003772 ORTHO05D004509 7.1e-74 280.8 170 91.2
Aa31LG1G8940 Aethionema arabicum HOM05D003772 ORTHO05D004509 5.2e-69 264.6 171 84.8
Aa31LG5G2950 Aethionema arabicum HOM05D003772 ORTHO05D004509 4.7e-62 241.5 171 80.1
THA.LOC104801171 Tarenaya hassleriana HOM05D003772 ORTHO05D004509 4.0e-61 238.4 174 76.4
AT4G03600 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 9.0e-61 237.3 160 81.9
Thhalv10029253m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 9.9e-60 233.8 164 80.5
AL6G49180 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 1.4e-58 229.9 158 80.4
Sp6g03590 Schrenkiella parvula HOM05D003772 ORTHO05D004509 1.2e-57 226.9 157 79.6
Ciclev10016940m.g Citrus clementina HOM05D003772 ORTHO05D004509 4.9e-51 204.9 151 72.2
TWI59G0493 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 6.4e-51 204.5 158 69.0
Atru.chr6.2987 Acer truncatum HOM05D003772 ORTHO05D004509 1.4e-50 203.4 167 64.7
RcHm_v2.0_Chr2g0126711 Rosa chinensis HOM05D003772 ORTHO05D004509 1.9e-50 203.0 149 70.5
Manes.12G089142 Manihot esculenta HOM05D003772 ORTHO05D004509 5.4e-50 201.4 153 69.3
PGR042G2646 Punica granatum HOM05D003772 ORTHO05D004509 7.1e-50 201.1 159 67.9
Thecc.02G180700 Theobroma cacao HOM05D003772 ORTHO05D004509 1.2e-49 200.3 155 69.0
TWI14G0986 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 2.1e-49 199.5 150 68.7
FAN09G0390 Fragaria x ananassa HOM05D003772 ORTHO05D004509 3.5e-49 198.7 145 72.4
Duzib132G0444 Durio zibethinus HOM05D003772 ORTHO05D004509 4.6e-49 198.4 162 67.3
FvH4_6g26280 Fragaria vesca HOM05D003772 ORTHO05D004509 6.0e-49 198.0 144 72.9
FAN02G3561 Fragaria x ananassa HOM05D003772 ORTHO05D004509 6.0e-49 198.0 144 72.9
FAN05G4300 Fragaria x ananassa HOM05D003772 ORTHO05D004509 6.0e-49 198.0 144 72.9
CsaV3_7G004480 Cucumis sativus L. HOM05D003772 ORTHO05D004509 1.3e-48 196.8 151 68.2
Duzib248G0440 Durio zibethinus HOM05D003772 ORTHO05D004509 1.3e-48 196.8 151 68.9
ClCG00G003560 Citrullus lanatus HOM05D003772 ORTHO05D004509 2.3e-48 196.1 165 64.2
ClCG07G002860 Citrullus lanatus HOM05D003772 ORTHO05D004509 2.3e-48 196.1 165 64.2
Duzib052G1162 Durio zibethinus HOM05D003772 ORTHO05D004509 3.0e-48 195.7 161 66.5
Lj3g0023444 Lotus japonicus HOM05D003772 ORTHO05D004509 3.0e-48 195.7 155 68.4
MELO3C018731.2 Cucumis melo HOM05D003772 ORTHO05D004509 3.9e-48 195.3 165 64.2
Lalb_Chr03g0029491 Lupinus albus HOM05D003772 ORTHO05D004509 3.9e-48 195.3 159 62.9
Manes.13G145756 Manihot esculenta HOM05D003772 ORTHO05D004509 5.1e-48 194.9 157 66.2
Manes.13G145808 Manihot esculenta HOM05D003772 ORTHO05D004509 5.1e-48 194.9 157 66.9
Manes.13G145815 Manihot esculenta HOM05D003772 ORTHO05D004509 8.7e-48 194.1 157 66.2
Manes.13G146061 Manihot esculenta HOM05D003772 ORTHO05D004509 8.7e-48 194.1 157 66.2
COL.COLO4_30203 Corchorus olitorius HOM05D003772 ORTHO05D004509 1.1e-47 193.7 146 71.2
Gorai.005G201000 Gossypium raimondii HOM05D003772 ORTHO05D004509 2.5e-47 192.6 147 72.1
Potri.013G130300 Populus trichocarpa HOM05D003772 ORTHO05D004509 2.5e-47 192.6 158 68.4
Haze_13171 Corylus avellana HOM05D003772 ORTHO05D004509 4.3e-47 191.8 137 73.7
Manes.13G145890 Manihot esculenta HOM05D003772 ORTHO05D004509 5.6e-47 191.4 157 65.6
Glyma.13G296500 Glycine max HOM05D003772 ORTHO05D004509 7.4e-47 191.0 153 66.0
Gohir.A03G156100 Gossypium hirsutum HOM05D003772 ORTHO05D004509 7.4e-47 191.0 145 72.4
TWI23G0933 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 7.4e-47 191.0 154 65.6
MD09G1246800 Malus domestica HOM05D003772 ORTHO05D004509 9.6e-47 190.7 164 64.0
Gohir.D02G179200 Gossypium hirsutum HOM05D003772 ORTHO05D004509 1.6e-46 189.9 145 71.7
Sed0018072 Sechium edule HOM05D003772 ORTHO05D004509 1.6e-46 189.9 169 60.9
Manes.13G145811 Manihot esculenta HOM05D003772 ORTHO05D004509 4.8e-46 188.3 157 64.3
Medtr4g078240 Medicago truncatula HOM05D003772 ORTHO05D004509 4.8e-46 188.3 162 63.6
Glyma.12G113500 Glycine max HOM05D003772 ORTHO05D004509 8.1e-46 187.6 164 61.6
Phvul.011G119000 Phaseolus vulgaris HOM05D003772 ORTHO05D004509 1.1e-45 187.2 155 67.1
Glyma.12G204900 Glycine max HOM05D003772 ORTHO05D004509 3.1e-45 185.7 161 62.7
VMungo1127G0003 Vigna mungo HOM05D003772 ORTHO05D004509 6.9e-45 184.5 155 66.5
Glyma.06G292300 Glycine max HOM05D003772 ORTHO05D004509 9.0e-45 184.1 149 65.1
TPR.G28019 Trifolium pratense HOM05D003772 ORTHO05D004509 9.0e-45 184.1 148 66.2
Lalb_Chr19g0135261 Lupinus albus HOM05D003772 ORTHO05D004509 1.2e-44 183.7 155 61.9
VMungo1080G0856 Vigna mungo HOM05D003772 ORTHO05D004509 1.5e-44 183.3 151 66.2
Gohir.A01G016500 Gossypium hirsutum HOM05D003772 ORTHO05D004509 2.0e-44 183.0 161 64.0
Hma1.2p1_0002F.1_g001920 Hydrangea macrophylla HOM05D003772 ORTHO05D004509 3.4e-44 182.2 141 66.0
MD17G1239700 Malus domestica HOM05D003772 ORTHO05D004509 4.5e-44 181.8 145 66.9
Prupe.3G132300 Prunus persica HOM05D003772 ORTHO05D004509 4.5e-44 181.8 143 67.8
CSS0030564 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 2.9e-43 179.1 149 61.7
Lsat_1_v5_gn_4_66640 Lactuca sativa HOM05D003772 ORTHO05D004509 1.4e-42 176.8 158 62.0
THA.LOC104804060 Tarenaya hassleriana HOM05D003772 ORTHO05D004509 3.2e-42 175.6 160 60.0
Dinv26410 Davidia involucrata HOM05D000001 ORTHO05D004509 4.2e-42 175.3 155 61.3
Peaxi162Scf00132g00006 Petunia axillaris HOM05D003772 ORTHO05D004509 1.6e-41 173.3 164 59.8
MSTRG.14329 Avicennia marina HOM05D003772 ORTHO05D004509 2.7e-41 172.6 164 58.5
MSTRG.14330 Avicennia marina HOM05D003772 ORTHO05D004509 2.7e-41 172.6 164 58.5
BcaNung01575 Brassica carinata HOM05D003772 ORTHO05D004509 3.5e-41 172.2 159 60.4
Psat0s2365g0040 Pisum sativum HOM05D003772 ORTHO05D004509 3.5e-41 172.2 141 67.4
Gohir.D01G016600 Gossypium hirsutum HOM05D003772 ORTHO05D004509 4.6e-41 171.8 143 65.7
Lj8P111T15 Lonicera japonica HOM05D003772 ORTHO05D004509 4.6e-41 171.8 140 64.3
Thhalv10026455m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 6.0e-41 171.4 141 65.2
Gorai.002G018300 Gossypium raimondii HOM05D003772 ORTHO05D004509 7.9e-41 171.0 143 65.7
Peaxi162Scf00059g00193 Petunia axillaris HOM05D003772 ORTHO05D004509 7.9e-41 171.0 162 58.0
SHI10396 Sapria himalayana HOM05D003772 ORTHO05D004509 7.9e-41 171.0 144 60.4
Actinidia11078 Actinidia chinensis HOM05D003772 ORTHO05D004509 1.0e-40 170.6 159 62.3
AL7G24270 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 1.0e-40 170.6 141 62.4
AT4G28330 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 1.0e-40 170.6 141 62.4
SGA_v2.0_scaffold322G48628 Striga asiatica HOM05D003772 ORTHO05D004509 1.3e-40 170.2 163 58.3
BcaC09g50489 Brassica carinata HOM05D003772 ORTHO05D004509 2.3e-40 169.5 159 59.1
C01p24810 Brassica napus HOM05D003772 ORTHO05D004509 2.3e-40 169.5 159 59.1
DCAR_021247 Daucus carota HOM05D003772 ORTHO05D004509 2.3e-40 169.5 159 59.7
Carub.0007s1242 Capsella rubella HOM05D003772 ORTHO05D004509 3.0e-40 169.1 141 62.4
A01p19750 Brassica napus HOM05D003772 ORTHO05D004509 3.9e-40 168.7 159 59.1
BraA01t01906Z Brassica rapa HOM05D003772 ORTHO05D004509 3.9e-40 168.7 159 59.1
TAR626G1598 Trochodendron aralioides HOM05D003772 ORTHO05D004509 3.9e-40 168.7 138 66.7
Migut.F01269 Erythranthe guttata HOM05D003772 ORTHO05D004509 6.7e-40 167.9 142 62.7
Sp7g26290 Schrenkiella parvula HOM05D003772 ORTHO05D004509 6.7e-40 167.9 141 64.5
A08p20120 Brassica napus HOM05D003772 ORTHO05D004509 1.1e-39 167.2 141 63.8
BraA08t33971Z Brassica rapa HOM05D003772 ORTHO05D004509 1.1e-39 167.2 141 63.8
HanXRQChr05g0130551 Helianthus annuus HOM05D003772 ORTHO05D004509 1.1e-39 167.2 162 58.6
EL10Ac9g20774 Beta vulgaris HOM05D003772 ORTHO05D004509 1.5e-39 166.8 151 62.3
Cc05_g07210 Coffea canephora HOM05D003772 ORTHO05D004509 1.5e-39 166.8 167 54.5
PGSC0003DMG400018339 Solanum tuberosum HOM05D003772 ORTHO05D004509 2.5e-39 166.0 150 59.3
unitig_62.g23166 Utricularia gibba HOM05D003772 ORTHO05D004509 2.5e-39 166.0 160 55.6
Solyc07g053930.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 3.3e-39 165.6 153 58.8
AT4G28340 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 4.3e-39 165.2 149 58.4
CARHR236040 Cardamine hirsuta HOM05D003772 ORTHO05D004509 9.6e-39 164.1 141 62.4
CAN.G248.1 Capsicum annuum HOM05D003772 ORTHO05D004509 1.3e-38 163.7 161 56.5
SGA_v2.0_scaffold109G31121 Striga asiatica HOM05D003772 ORTHO05D004509 1.6e-38 163.3 168 56.0
PSO675G9105 Papaver somniferum HOM05D003772 ORTHO05D004509 2.8e-38 162.5 141 61.7
Nn1g06533 Nelumbo nucifera HOM05D003772 ORTHO05D004509 8.2e-38 161.0 145 57.9
AUR62042887 Chenopodium quinoa HOM05D003772 ORTHO05D004509 1.8e-37 159.8 143 64.3
Sabra13G0108200 Salix brachista HOM05D003772 ORTHO05D004509 1.8e-37 159.8 135 63.7
Aa31LG2G22190 Aethionema arabicum HOM05D003772 ORTHO05D004509 2.4e-37 159.5 144 59.0
Aqoxy1G02411 Aquilegia oxysepala HOM05D003772 ORTHO05D004509 3.1e-37 159.1 162 53.1
TAR624G0900 Trochodendron aralioides HOM05D003772 ORTHO05D004509 3.1e-37 159.1 153 56.2
Oeu007126.1 Olea europaea HOM05D003772 ORTHO05D004509 4.0e-37 158.7 148 60.1
Sopen07g027910 Solanum pennellii HOM05D003772 ORTHO05D004509 2.0e-36 156.4 138 61.6
HanXRQChr05g0143311 Helianthus annuus HOM05D003772 ORTHO05D004509 2.6e-36 156.0 158 55.1
Solyc10g008310.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 2.2e-35 152.9 138 58.7
PGSC0003DMG400013145 Solanum tuberosum HOM05D003772 ORTHO05D004509 2.9e-35 152.5 139 58.3
Nn1g04097 Nelumbo nucifera HOM05D003772 ORTHO05D004509 8.4e-35 151.0 137 59.1
DCAR_013015 Daucus carota HOM05D003772 ORTHO05D004509 1.4e-34 150.2 136 59.6
HPP92_021377 Vanilla planifolia HOM05D003772 ORTHO05D004509 1.9e-34 149.8 139 59.7
ATR0824G095 Amborella trichopoda HOM05D003772 ORTHO05D004509 3.5e-33 145.6 145 54.5
CSS0009217 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 1.0e-32 144.1 136 58.1
Oeu017493.1 Olea europaea HOM05D003772 ORTHO05D004509 1.8e-32 143.3 144 56.9
CSS0020254 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 5.1e-32 141.7 133 59.4
MBI06_g33538_MAGBIO Magnolia biondii HOM05D003772 ORTHO05D004509 1.5e-31 140.2 143 53.8
CiPaw.03G178000 Carya illinoinensis HOM05D003772 ORTHO05D004509 2.5e-31 139.4 161 51.6
Lalb_Chr22g0356581 Lupinus albus HOM05D003772 ORTHO05D004509 4.3e-31 138.7 161 49.1
PSO541G0621 Papaver somniferum HOM05D003772 ORTHO05D004509 5.7e-31 138.3 124 60.5
BcaC07g38325 Brassica carinata HOM05D003772 ORTHO05D004509 1.1e-29 134.0 141 53.2
C08p10800 Brassica napus HOM05D003772 ORTHO05D004509 1.1e-29 134.0 141 53.2
Eucgr.A01826 Eucalyptus grandis HOM05D003772 ORTHO05D004509 3.1e-29 132.5 148 51.4
Os12g0295600 Oryza sativa ssp. japonica HOM05D003772 ORTHO05D004509 5.3e-29 131.7 161 50.3
Cfa014621 Carpinus fangiana HOM05D003772 ORTHO05D004509 6.9e-29 131.3 99 72.7
Zm00001eb163400 Zea mays HOM05D003772 ORTHO05D004509 6.9e-29 131.3 163 50.9
Ah.11g049030 Amaranthus hybridus HOM05D003772 ORTHO05D004509 7.6e-28 127.9 114 61.4
Lsat_1_v5_gn_8_135800 Lactuca sativa HOM05D003772 ORTHO05D004509 1.0e-27 127.5 159 52.2
Nitab4.5_0011784g0020 Nicotiana tabacum HOM05D003772 ORTHO05D004509 1.0e-27 127.5 136 53.7
CSS0025212 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 6.5e-27 124.8 123 57.7
QL08p038995 Quercus lobata HOM05D003772 ORTHO05D004509 1.1e-26 124.0 92 68.5
BolC8t48755H Brassica oleracea HOM05D003772 ORTHO05D004509 3.2e-26 122.5 142 52.1
Ah.14g082650 Amaranthus hybridus HOM05D003772 ORTHO05D004509 5.5e-26 121.7 114 57.9
HPP92_020246 Vanilla planifolia HOM05D003772 ORTHO05D004509 3.6e-25 119.0 140 52.1
PGR142G3565 Punica granatum HOM05D003772 ORTHO05D004509 7.9e-25 117.9 139 52.5
Eucgr.A01824 Eucalyptus grandis HOM05D003772 ORTHO05D004509 1.0e-24 117.5 105 61.0
Nitab4.5_0014741g0030 Nicotiana tabacum HOM05D003772 ORTHO05D004509 1.3e-24 117.1 101 60.4
Nitab4.5_0000638g0260 Nicotiana tabacum HOM05D003772 ORTHO05D004509 3.0e-24 115.9 100 61.0
HanXRQChr17g0555101 Helianthus annuus HOM05D003772 ORTHO05D004509 1.1e-23 114.0 139 48.2
CSS0031333 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 2.5e-23 112.8 95 65.3
Nn2g11445 Nelumbo nucifera HOM05D003772 ORTHO05D004509 2.5e-23 112.8 135 48.1
Eucgr.K01033 Eucalyptus grandis HOM05D003772 ORTHO05D004509 2.8e-22 109.4 159 45.9
Rhsim13G0122200 Rhododendron simsii HOM05D003772 ORTHO05D004509 1.5e-20 103.6 104 59.6
BcaB03g12567 Brassica carinata HOM05D003772 ORTHO05D004509 6.5e-19 98.2 141 48.2
CDE09G0587 Ceratophyllum demersum HOM05D003772 ORTHO05D004509 7.2e-18 94.7 112 50.0
DCAR_019180 Daucus carota HOM05D003772 ORTHO05D004509 7.9e-17 91.3 119 47.1
Sopen10g004170 Solanum pennellii HOM05D000002 ORTHO05D000001 2.0e-15 86.7 88 56.8
SalBow8G1020 Salvia bowleyana HOM05D003772 ORTHO05D004509 1.8e-13 80.1 72 58.3
vmacro00494 Vaccinium macrocarpon HOM05D003772 ORTHO05D004509 1.8e-13 80.1 126 47.6
unitig_52.g17351 Utricularia gibba HOM05D003772 ORTHO05D004509 9.1e-13 77.8 76 56.6
Rhsim06G0141600 Rhododendron simsii HOM05D003772 ORTHO05D004509 4.2e-10 68.9 56 58.9
Nn4g24929 Nelumbo nucifera HOM05D003772 ORTHO05D004509 1.6e-09 67.0 103 41.7
PGSC0003DMG400000773 Solanum tuberosum HOM05D001192 ORTHO05D051357 2.0e-07 60.1 47 68.1
ClCG02G017670 Citrullus lanatus HOM05D003772 ORTHO05D004509 3.3e-07 59.3 74 55.4
Lj5A129G68 Lonicera japonica HOM05D003772 ORTHO05D010346 3.3e-07 59.3 76 50.0
DCAR_021586 Daucus carota HOM05D003772 ORTHO05D004509 4.4e-07 58.9 72 51.4
CsaV3_6G012890 Cucumis sativus L. HOM05D003772 ORTHO05D004509 5.7e-07 58.5 83 51.8
Rhsim08G0177400 Rhododendron simsii HOM05D008378 ORTHO05D010346 5.7e-07 58.5 168 34.5
vmacro19302 Vaccinium macrocarpon HOM05D008378 ORTHO05D010346 1.7e-06 57.0 73 49.3
Aqoxy4G00788 Aquilegia oxysepala HOM05D003772 ORTHO05D004509 2.2e-06 56.6 125 30.4
Nn2g13184 Nelumbo nucifera HOM05D003772 ORTHO05D004509 2.8e-06 56.2 56 51.8
MELO3C013623.2 Cucumis melo HOM05D003772 ORTHO05D004509 4.8e-06 55.5 60 55.0
CiPaw.11G020600 Carya illinoinensis HOM05D008378 ORTHO05D010346 6.3e-06 55.1 70 48.6
SalBow6G1615 Salvia bowleyana HOM05D008378 ORTHO05D010346 6.3e-06 55.1 89 46.1


User provided reference genes

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