Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g02185 Schrenkiella parvula HOM05D005096 ORTHO05D006566 0.0e+00 1728.8 922 100.0
Carub.0001s0230 Capsella rubella HOM05D005096 ORTHO05D006566 0.0e+00 1589.3 922 91.3
AL1G12650 Arabidopsis lyrata HOM05D005096 ORTHO05D006566 0.0e+00 1575.5 922 90.8
Thhalv10006729m.g Eutrema salsugineum HOM05D005096 ORTHO05D006566 0.0e+00 1568.1 915 90.7
CARHR002500 Cardamine hirsuta HOM05D005096 ORTHO05D006566 0.0e+00 1558.1 922 90.1
C08p00440 Brassica napus HOM05D005096 ORTHO05D006566 0.0e+00 1536.5 916 90.7
BolC8t46843H Brassica oleracea HOM05D005096 ORTHO05D006566 0.0e+00 1525.4 916 90.0
A08p37450 Brassica napus HOM05D005096 ORTHO05D006566 0.0e+00 1516.9 916 90.0
BraA08t35643Z Brassica rapa HOM05D005096 ORTHO05D006566 0.0e+00 1516.9 916 90.0
Aa31LG1G9370 Aethionema arabicum HOM05D005096 ORTHO05D006566 0.0e+00 1469.5 923 84.6
THA.LOC104801235 Tarenaya hassleriana HOM05D005096 ORTHO05D006566 0.0e+00 1325.1 925 76.9
AT1G03160 Arabidopsis thaliana HOM05D005096 ORTHO05D006566 0.0e+00 1130.9 697 87.9
Atru.chr5.1434 Acer truncatum HOM05D005096 ORTHO05D006566 1.4e-306 1056.2 923 62.1
GSVIVG01011085001 Vitis vinifera HOM05D005096 ORTHO05D006566 1.5e-300 1036.2 894 62.4
Prupe.8G241300 Prunus persica HOM05D005096 ORTHO05D006566 2.5e-295 1018.8 917 61.2
Cfa006136 Carpinus fangiana HOM05D005096 ORTHO05D006566 1.3e-294 1016.5 923 59.8
QL12p021914 Quercus lobata HOM05D005096 ORTHO05D006566 2.4e-293 1012.3 875 62.7
Sabra05G0159300 Salix brachista HOM05D005096 ORTHO05D006566 2.0e-292 1009.2 904 60.1
COL.COLO4_09099 Corchorus olitorius HOM05D005096 ORTHO05D006566 1.9e-290 1002.7 911 59.7
TWI23G0916 Tripterygium wilfordii HOM05D005096 ORTHO05D006566 5.5e-290 1001.1 894 60.9
Thecc.01G279600 Theobroma cacao HOM05D005096 ORTHO05D006566 9.4e-290 1000.3 924 59.1
Duzib138G0773 Durio zibethinus HOM05D005096 ORTHO05D006566 2.1e-289 999.2 919 59.1
Potri.005G209200 Populus trichocarpa HOM05D005096 ORTHO05D006566 2.3e-288 995.7 893 59.8
Haze_04712 Corylus avellana HOM05D005096 ORTHO05D006566 8.8e-288 993.8 962 57.1
Manes.05G076137 Manihot esculenta HOM05D005096 ORTHO05D006566 1.5e-287 993.0 924 58.0
Gorai.004G080200 Gossypium raimondii HOM05D005096 ORTHO05D006566 5.7e-287 991.1 919 58.5
Ciclev10023868m.g Citrus clementina HOM05D005096 ORTHO05D006566 1.1e-285 986.9 902 59.9
CiPaw.07G091400 Carya illinoinensis HOM05D005096 ORTHO05D006566 4.1e-285 984.9 906 58.9
Dinv32937 Davidia involucrata HOM05D005096 ORTHO05D006566 3.4e-284 981.9 892 59.5
RcHm_v2.0_Chr6g0291071 Rosa chinensis HOM05D005096 ORTHO05D006566 3.4e-284 981.9 919 59.1
TAR633G0362 Trochodendron aralioides HOM05D005096 ORTHO05D006566 8.5e-283 977.2 862 60.4
MD11G1286100 Malus domestica HOM05D005096 ORTHO05D006566 1.4e-282 976.5 919 58.3
FAN27G2515 Fragaria x ananassa HOM05D005096 ORTHO05D006566 2.5e-282 975.7 923 58.5
FAN20G2556 Fragaria x ananassa HOM05D005096 ORTHO05D006566 1.6e-281 973.0 864 60.6
FvH4_2g23600 Fragaria vesca HOM05D005096 ORTHO05D006566 1.0e-280 970.3 866 60.7
FAN15G1882 Fragaria x ananassa HOM05D005096 ORTHO05D006566 3.9e-280 968.4 917 58.6
CSS0045500 Camellia sinensis var. sinensis HOM05D005096 ORTHO05D006566 4.8e-278 961.4 889 58.9
Lj2A1173G9 Lonicera japonica HOM05D005096 ORTHO05D006566 2.4e-277 959.1 867 59.3
Lj5g0021757 Lotus japonicus HOM05D005096 ORTHO05D006566 2.4e-277 959.1 901 56.9
Rhsim13G0024600 Rhododendron simsii HOM05D005096 ORTHO05D006566 2.4e-277 959.1 918 57.7
Gohir.D08G075900 Gossypium hirsutum HOM05D005096 ORTHO05D006566 9.4e-274 947.2 919 56.6
vmacro02569 Vaccinium macrocarpon HOM05D005096 ORTHO05D006566 1.6e-273 946.4 922 56.7
ClCG07G000240 Citrullus lanatus HOM05D005096 ORTHO05D006566 1.0e-272 943.7 890 58.3
Ca_09758_v3 Cicer arietinum L. HOM05D005096 ORTHO05D006566 1.4e-272 943.3 916 56.2
Aqoxy2G03326 Aquilegia oxysepala HOM05D005096 ORTHO05D006566 4.0e-272 941.8 876 57.5
TPR.G9125 Trifolium pratense HOM05D005096 ORTHO05D006566 5.2e-272 941.4 864 57.4
CsaV3_6G037120 Cucumis sativus L. HOM05D005096 ORTHO05D006566 1.1e-271 940.3 891 57.6
Duzib133G0542 Durio zibethinus HOM05D005096 ORTHO05D006566 1.1e-271 940.3 914 56.6
Actinidia00750 Actinidia chinensis HOM05D005096 ORTHO05D006566 1.5e-271 939.9 917 56.4
Actinidia09139 Actinidia chinensis HOM05D005096 ORTHO05D006566 2.6e-271 939.1 889 57.8
arahy.Tifrunner.gnm1.ann1.2R7T4K Arachis hypogaea HOM05D005096 ORTHO05D006566 5.7e-271 937.9 897 57.2
CANSAT25G0791 Cannabis sativa HOM05D005096 ORTHO05D006566 1.4e-269 933.3 930 54.8
Medtr1g072270 Medicago truncatula HOM05D005096 ORTHO05D006566 5.0e-267 924.9 889 55.8
Glyma.02G147400 Glycine max HOM05D005096 ORTHO05D006566 6.5e-267 924.5 920 55.2
Oeu022870.1 Olea europaea HOM05D005096 ORTHO05D006566 7.2e-266 921.0 899 56.2
Glyma.10G026400 Glycine max HOM05D005096 ORTHO05D006566 6.1e-265 917.9 862 57.3
VMungo0720G0024 Vigna mungo HOM05D005096 ORTHO05D006566 1.4e-264 916.8 881 56.2
Phvul.007G172000 Phaseolus vulgaris HOM05D005096 ORTHO05D006566 1.2e-263 913.7 902 55.8
Nitab4.5_0000458g0050 Nicotiana tabacum HOM05D005096 ORTHO05D006566 1.5e-263 913.3 918 55.3
Nitab4.5_0008435g0030 Nicotiana tabacum HOM05D005096 ORTHO05D006566 2.0e-263 912.9 920 54.7
FAN24G2260 Fragaria x ananassa HOM05D005096 ORTHO05D006566 2.6e-263 912.5 866 58.1
arahy.Tifrunner.gnm1.ann1.TN9YNV Arachis hypogaea HOM05D005096 ORTHO05D006566 4.8e-262 908.3 962 53.3
ECA247G0546 Erigeron canadensis HOM05D005096 ORTHO05D006566 1.1e-261 907.1 893 55.3
Lsat_1_v5_gn_9_3760 Lactuca sativa HOM05D005096 ORTHO05D006566 1.8e-261 906.4 888 55.2
Peaxi162Scf01607g00116 Petunia axillaris HOM05D005096 ORTHO05D006566 7.0e-261 904.4 891 56.2
Sed0025205 Sechium edule HOM05D005096 ORTHO05D006566 7.0e-261 904.4 913 55.5
Sopen09g026860 Solanum pennellii HOM05D005096 ORTHO05D006566 1.9e-258 896.3 867 57.0
HanXRQChr10g0282661 Helianthus annuus HOM05D005096 ORTHO05D006566 2.1e-257 892.9 868 56.1
Hund05342 Selenicereus undatus HOM05D005096 ORTHO05D006566 3.7e-254 882.1 888 54.6
Migut.D00294 Erythranthe guttata HOM05D005096 ORTHO05D006566 4.9e-254 881.7 927 53.4
ATR0626G051 Amborella trichopoda HOM05D005096 ORTHO05D006566 2.4e-253 879.4 933 52.7
PSO170G0567 Papaver somniferum HOM05D005096 ORTHO05D006566 1.7e-251 873.2 886 54.3
Sc05g0004960 Simmondsia chinensis HOM05D005096 ORTHO05D006566 1.1e-250 870.5 925 52.8
DCAR_002736 Daucus carota HOM05D005096 ORTHO05D006566 4.3e-250 868.6 891 53.8
SalBow4G0282 Salvia bowleyana HOM05D005096 ORTHO05D006566 2.3e-248 862.8 924 52.6
EL10Ac7g17230 Beta vulgaris HOM05D005096 ORTHO05D006566 4.0e-248 862.1 873 54.5
PSO302G0140 Papaver somniferum HOM05D005096 ORTHO05D006566 6.8e-248 861.3 888 54.1
MSTRG.21562 Avicennia marina HOM05D005096 ORTHO05D006566 2.0e-247 859.8 925 53.1
MBI19_g21295_MAGBIO Magnolia biondii HOM05D005096 ORTHO05D006566 1.7e-246 856.7 806 58.2
Ah.15g091940 Amaranthus hybridus HOM05D005096 ORTHO05D006566 2.9e-246 855.9 909 52.5
Cc01_g19500 Coffea canephora HOM05D005096 ORTHO05D006566 1.6e-241 840.1 890 53.1
Psat6g060000 Pisum sativum HOM05D005096 ORTHO05D006566 1.0e-240 837.4 849 54.7
Gohir.A08G067500 Gossypium hirsutum HOM05D005096 ORTHO05D006566 2.3e-240 836.3 787 58.1
CAN.G242.2 Capsicum annuum HOM05D005096 ORTHO05D006566 7.5e-239 831.2 914 52.1
Eucgr.H01482 Eucalyptus grandis HOM05D005096 ORTHO05D006566 4.1e-237 825.5 751 58.9
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 1.6e-233 813.5 871 52.8
HPP92_012091 Vanilla planifolia HOM05D003650 ORTHO05D004213 3.6e-233 812.4 922 50.5
PGR119G0033 Punica granatum HOM05D005096 ORTHO05D006566 1.4e-232 810.4 737 59.7
CDE06G0317 Ceratophyllum demersum HOM05D005096 ORTHO05D006566 1.5e-231 807.0 860 52.1
AUR62036827 Chenopodium quinoa HOM05D005096 ORTHO05D006566 7.1e-229 798.1 898 50.6
AUR62043137 Chenopodium quinoa HOM05D005096 ORTHO05D006566 1.5e-218 763.8 888 49.9
Solyc09g065160.4 Solanum lycopersicum HOM05D005096 ORTHO05D006566 1.8e-216 756.9 733 56.6
Os05g0390100 Oryza sativa ssp. japonica HOM05D005096 ORTHO05D006566 2.6e-215 753.1 804 51.1
SGA_v2.0_scaffold1G00471 Striga asiatica HOM05D005096 ORTHO05D006566 1.3e-209 734.2 925 48.1
Hma1.2p1_0257F.1_g103450 Hydrangea macrophylla HOM05D005096 ORTHO05D006566 3.2e-205 719.5 656 59.3
Duzib133G0424 Durio zibethinus HOM05D005096 ORTHO05D006566 1.3e-193 681.0 550 63.6
Zm00001eb287190 Zea mays HOM05D005096 ORTHO05D006566 5.9e-183 645.6 614 55.5
Mapoly0002s0267 Marchantia polymorpha HOM05D005096 ORTHO05D006566 1.6e-180 637.5 892 42.4
Lalb_Chr02g0142781 Lupinus albus HOM05D005096 ORTHO05D006566 1.9e-178 630.6 551 59.5
AagrBONN_evm.TU.Sc2ySwM_228.961 Anthoceros agrestis HOM05D005096 ORTHO05D006566 3.3e-178 629.8 897 42.5
Pp3c3_25850 Physcomitrium patens HOM05D005096 ORTHO05D006566 1.5e-170 604.4 904 40.5
Pp3c10_17390 Physcomitrium patens HOM05D005096 ORTHO05D006566 1.7e-169 600.9 908 39.5
MD11G1312200 Malus domestica HOM05D005096 ORTHO05D006566 1.1e-162 578.2 712 48.7
Sabra02G0043400 Salix brachista HOM05D005096 ORTHO05D006566 5.2e-155 552.7 804 44.5
MELO3C014401.2 Cucumis melo HOM05D005096 ORTHO05D006566 3.5e-151 540.0 476 58.6
SMO147G0152 Selaginella moellendorffii HOM05D005096 ORTHO05D006566 1.6e-140 504.6 895 38.3
MD11G1311700 Malus domestica HOM05D005096 ORTHO05D006566 4.1e-128 463.4 479 55.3
PRCOL_00001755 Prasinoderma coloniale HOM05D005096 ORTHO05D006566 2.6e-106 391.0 924 32.8
CBR_g4009 Chara braunii HOM05D005096 ORTHO05D006566 4.1e-104 383.6 957 32.3
Cpa.g.sc52.38 Carica papaya HOM05D005096 ORTHO05D006566 4.0e-99 367.1 313 63.3
MELO3C014400.2 Cucumis melo HOM05D005096 ORTHO05D008790 9.9e-98 362.5 393 54.2
Hund05386 Selenicereus undatus HOM05D005096 ORTHO05D006566 2.7e-95 354.4 402 52.2
Cpa.g.c40412 Carica papaya HOM05D005096 ORTHO05D006566 2.3e-94 351.3 289 64.0
Cre14.g616600 Chlamydomonas reinhardtii HOM05D005096 ORTHO05D006566 3.9e-94 350.5 987 28.7
AUR62043139 Chenopodium quinoa HOM05D005096 ORTHO05D006566 1.7e-89 335.1 350 52.9
AUR62043138 Chenopodium quinoa HOM05D005096 ORTHO05D006566 2.4e-80 304.7 450 44.4
Lalb_Chr02g0142771 Lupinus albus HOM05D005096 ORTHO05D006566 2.1e-79 301.6 345 51.9
MCO02G198 Micromonas commoda HOM05D005096 ORTHO05D006566 2.7e-79 301.2 669 33.3
Cpa.g.c38803 Carica papaya HOM05D005096 ORTHO05D006566 1.9e-77 295.0 268 58.6
Potri.002G053332 Populus trichocarpa HOM05D005096 ORTHO05D006566 2.0e-66 258.5 256 57.4
Migut.D00341 Erythranthe guttata HOM05D005096 ORTHO05D006566 7.9e-63 246.5 453 40.0
Hund05340 Selenicereus undatus HOM05D005096 ORTHO05D006566 5.3e-59 233.8 180 67.2
MD11G1311600 Malus domestica HOM05D005096 ORTHO05D006566 1.0e-54 219.5 218 52.8
MD11G1311400 Malus domestica HOM05D005096 ORTHO05D006566 2.6e-50 204.9 390 39.0
Sabra05G0150000 Salix brachista HOM05D005096 ORTHO05D006566 6.5e-49 200.3 164 61.0
SEGI_14404 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.6e-47 195.7 378 37.0
Potri.002G053366 Populus trichocarpa HOM05D005096 ORTHO05D006566 2.6e-45 188.3 193 51.3
Cpa.g.c44243 Carica papaya HOM05D005096 ORTHO05D006566 2.2e-41 175.3 132 70.5
SEGI_13636 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.2e-39 169.5 265 37.0
SEGI_20481 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.4e-38 166.0 177 49.7
arahy.Tifrunner.gnm1.ann1.VTSW9N Arachis hypogaea HOM05D005096 ORTHO05D006566 3.1e-35 154.8 137 57.7
Glyma.18G167550 Glycine max HOM05D005096 ORTHO05D006566 3.7e-28 131.3 97 72.2
Cpa.g.sc370.1 Carica papaya HOM05D005096 ORTHO05D006566 8.3e-28 130.2 156 53.8
MD00G1063200 Malus domestica HOM05D005096 ORTHO05D006566 3.1e-27 128.3 129 52.7
PGSC0003DMG400012881 Solanum tuberosum HOM05D005096 ORTHO05D006566 1.9e-24 119.0 104 61.5
TAR362G0796 Trochodendron aralioides HOM05D005096 ORTHO05D006566 6.8e-22 110.5 97 57.7
arahy.Tifrunner.gnm1.ann1.X3UYKF Arachis hypogaea HOM05D005525 ORTHO05D006341 1.7e-17 95.9 95 57.9
arahy.Tifrunner.gnm1.ann1.BB9JSJ Arachis hypogaea HOM05D000384 ORTHO05D000468 7.3e-16 90.5 92 55.4
Hund05341 Selenicereus undatus HOM05D005096 ORTHO05D006566 1.6e-15 89.4 63 73.0
arahy.Tifrunner.gnm1.ann1.K3B567 Arachis hypogaea HOM05D005525 ORTHO05D006341 6.1e-15 87.4 177 37.9
MD11G1311300 Malus domestica HOM05D005096 ORTHO05D006566 1.0e-14 86.7 68 67.6
arahy.Tifrunner.gnm1.ann1.Y3S9ZW Arachis hypogaea HOM05D005525 ORTHO05D006341 1.4e-14 86.3 119 47.1
SEGI_24308 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.7e-12 79.3 48 75.0
SEGI_37612 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 5.4e-11 74.3 153 29.4
Hma1.2p1_0536F.1_g174110 Hydrangea macrophylla HOM05D005096 ORTHO05D006214 1.1e-08 66.6 60 58.3
SEGI_40401 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 9.5e-08 63.5 112 38.4
arahy.Tifrunner.gnm1.ann1.8W9TWR Arachis hypogaea HOM05D005096 ORTHO05D006566 1.8e-06 59.3 60 50.0


User provided reference genes

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