Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g02150 Schrenkiella parvula HOM05D004620 ORTHO05D005999 5.1e-111 404.4 206 100.0
AL1G12600 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 1.3e-103 379.8 206 94.2
Carub.0001s0227 Capsella rubella HOM05D004620 ORTHO05D005999 1.1e-102 376.7 208 93.8
AT1G03130 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 7.3e-102 374.0 206 93.2
CARHR002480 Cardamine hirsuta HOM05D004620 ORTHO05D005999 2.1e-101 372.5 206 93.7
Sp6g02800 Schrenkiella parvula HOM05D004620 ORTHO05D005999 2.0e-99 365.9 206 90.8
AL6G50160 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 2.6e-99 365.5 207 90.3
AT4G02770 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 7.6e-99 364.0 209 90.4
CARHR251140 Cardamine hirsuta HOM05D004620 ORTHO05D005999 2.9e-98 362.1 207 89.9
C09p02270 Brassica napus HOM05D004620 ORTHO05D005999 6.4e-98 360.9 210 88.1
BcaC04g24013 Brassica carinata HOM05D004620 ORTHO05D005999 8.4e-98 360.5 209 88.5
BolC9t53156H Brassica oleracea HOM05D004620 ORTHO05D005999 1.1e-97 360.1 208 88.5
THA.LOC104815937 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 1.9e-97 359.4 208 89.4
A09p02190 Brassica napus HOM05D004620 ORTHO05D005999 3.2e-97 358.6 209 88.0
THA.LOC104801241 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 3.2e-97 358.6 209 89.0
BraA09t35867Z Brassica rapa HOM05D004620 ORTHO05D005999 4.2e-97 358.2 208 88.0
Aa31LG5G2470 Aethionema arabicum HOM05D004620 ORTHO05D005999 3.5e-96 355.1 211 87.2
Carub.0006s3429 Capsella rubella HOM05D004620 ORTHO05D005999 4.6e-96 354.8 206 88.8
BcaB01g02006 Brassica carinata HOM05D004620 ORTHO05D005999 8.1e-93 344.0 211 84.4
Thhalv10029178m.g Eutrema salsugineum HOM05D004620 ORTHO05D005999 2.4e-92 342.4 192 89.6
COL.COLO4_09078 Corchorus olitorius HOM05D004620 ORTHO05D005999 1.5e-83 313.2 211 79.6
Gorai.004G079200 Gossypium raimondii HOM05D004620 ORTHO05D005999 4.9e-82 308.1 211 77.3
Gohir.D08G074900 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.9e-81 306.2 211 76.8
VMungo0720G0388 Vigna mungo HOM05D004620 ORTHO05D005999 2.5e-81 305.8 215 76.7
Duzib138G0113 Durio zibethinus HOM05D004620 ORTHO05D005999 5.5e-81 304.7 208 77.4
Eucgr.B01088 Eucalyptus grandis HOM05D004620 ORTHO05D005999 5.5e-81 304.7 215 76.3
AUR62007866 Chenopodium quinoa HOM05D004620 ORTHO05D005999 7.1e-81 304.3 212 76.4
Gohir.A08G066200 Gossypium hirsutum HOM05D004620 ORTHO05D005999 9.3e-81 303.9 212 77.8
AUR62003053 Chenopodium quinoa HOM05D004620 ORTHO05D005999 1.2e-80 303.5 212 75.9
Gorai.008G004100 Gossypium raimondii HOM05D004620 ORTHO05D005999 1.6e-80 303.1 210 76.2
FvH4_4g15260 Fragaria vesca HOM05D004620 ORTHO05D005999 2.7e-80 302.4 209 76.6
FAN12G0806 Fragaria x ananassa HOM05D004620 ORTHO05D005999 2.7e-80 302.4 209 76.6
Lj5g0027866 Lotus japonicus HOM05D004620 ORTHO05D005999 2.7e-80 302.4 212 76.4
Ciclev10022248m.g Citrus clementina HOM05D004620 ORTHO05D005999 3.5e-80 302.0 213 75.1
COL.COLO4_08529 Corchorus olitorius HOM05D004620 ORTHO05D005999 3.5e-80 302.0 212 75.9
Gohir.D12G004300 Gossypium hirsutum HOM05D004620 ORTHO05D005999 6.0e-80 301.2 210 76.2
FAN07G2783 Fragaria x ananassa HOM05D004620 ORTHO05D005999 7.9e-80 300.8 209 76.1
FAN22G0449 Fragaria x ananassa HOM05D004620 ORTHO05D005999 7.9e-80 300.8 209 76.1
Thecc.01G277200 Theobroma cacao HOM05D004620 ORTHO05D005999 7.9e-80 300.8 209 76.6
Lsat_1_v5_gn_6_83821 Lactuca sativa HOM05D000776 ORTHO05D001624 1.0e-79 300.4 207 76.8
DCAR_030627 Daucus carota HOM05D004620 ORTHO05D005999 1.8e-79 299.7 207 76.8
Lalb_Chr09g0319821 Lupinus albus HOM05D004620 ORTHO05D005999 1.8e-79 299.7 217 73.3
Nn1g02273 Nelumbo nucifera HOM05D004620 ORTHO05D005999 1.8e-79 299.7 214 73.8
Duzib211G0345 Durio zibethinus HOM05D004620 ORTHO05D005999 2.3e-79 299.3 207 78.3
Glyma.10G249000 Glycine max HOM05D004620 ORTHO05D005999 2.3e-79 299.3 210 75.7
CAN.G873.3 Capsicum annuum HOM05D004620 ORTHO05D005999 3.9e-79 298.5 206 76.7
CSS0028157 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 5.1e-79 298.1 218 73.4
RcHm_v2.0_Chr4g0416571 Rosa chinensis HOM05D004620 ORTHO05D005999 5.1e-79 298.1 209 75.6
Aqoxy2G03369 Aquilegia oxysepala HOM05D004620 ORTHO05D005999 6.7e-79 297.7 214 73.8
ECA246G4948 Erigeron canadensis HOM05D004620 ORTHO05D005999 6.7e-79 297.7 207 75.4
FAN17G0373 Fragaria x ananassa HOM05D004620 ORTHO05D005999 6.7e-79 297.7 209 75.6
MD16G1191400 Malus domestica HOM05D004620 ORTHO05D005999 6.7e-79 297.7 213 73.2
Phvul.007G055900 Phaseolus vulgaris HOM05D004620 ORTHO05D005999 6.7e-79 297.7 212 76.9
Nn4g26289 Nelumbo nucifera HOM05D004620 ORTHO05D005999 8.7e-79 297.4 218 73.9
CANSAT78G0495 Cannabis sativa HOM05D004620 ORTHO05D005999 1.1e-78 297.0 162 88.9
PGR004G0890 Punica granatum HOM05D004620 ORTHO05D005999 1.1e-78 297.0 208 75.0
GSVIVG01001159001 Vitis vinifera HOM05D004620 ORTHO05D005999 1.5e-78 296.6 213 75.6
HanXRQChr17g0534921 Helianthus annuus HOM05D004620 ORTHO05D005999 1.9e-78 296.2 210 76.7
PSO210G3526 Papaver somniferum HOM05D004620 ORTHO05D005999 1.9e-78 296.2 210 74.3
PGSC0003DMG400011816 Solanum tuberosum HOM05D004620 ORTHO05D005999 1.9e-78 296.2 209 75.6
Lsat_1_v5_gn_3_11160 Lactuca sativa HOM05D004620 ORTHO05D005999 2.5e-78 295.8 206 77.2
PSO761G0667 Papaver somniferum HOM05D004620 ORTHO05D005999 2.5e-78 295.8 210 73.8
Duzib151G0623 Durio zibethinus HOM05D004620 ORTHO05D005999 3.3e-78 295.4 213 74.2
MBI01_g45395_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 3.3e-78 295.4 175 84.0
EL10Ac6g14667 Beta vulgaris HOM05D004620 ORTHO05D005999 5.7e-78 294.7 218 72.9
Ciclev10005892m.g Citrus clementina HOM05D004620 ORTHO05D005999 5.7e-78 294.7 208 75.5
Medtr5g006130 Medicago truncatula HOM05D004620 ORTHO05D005999 5.7e-78 294.7 209 73.2
Sopen06g019380 Solanum pennellii HOM05D004620 ORTHO05D005999 9.7e-78 293.9 207 73.9
Thecc.04G229000 Theobroma cacao HOM05D004620 ORTHO05D005999 9.7e-78 293.9 212 73.6
CsaV3_3G013420 Cucumis sativus L. HOM05D004620 ORTHO05D005999 1.3e-77 293.5 211 74.4
Nitab4.5_0000321g0050 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.6e-77 293.1 209 76.1
MELO3C006539.2 Cucumis melo HOM05D004620 ORTHO05D005999 2.1e-77 292.7 211 73.9
Glyma.20G144700 Glycine max HOM05D004620 ORTHO05D005999 2.1e-77 292.7 211 74.9
Potri.010G089400 Populus trichocarpa HOM05D004620 ORTHO05D005999 2.1e-77 292.7 166 86.1
Sc25g0004390 Simmondsia chinensis HOM05D004620 ORTHO05D005999 2.1e-77 292.7 204 74.5
Solyc06g054260.1 Solanum lycopersicum HOM05D004620 ORTHO05D005999 2.1e-77 292.7 210 74.3
TWI73G0890 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 2.1e-77 292.7 182 81.3
TAR365G1144 Trochodendron aralioides HOM05D004620 ORTHO05D005999 2.1e-77 292.7 212 73.1
SGA_v2.0_scaffold39G15267 Striga asiatica HOM05D004620 ORTHO05D005999 2.8e-77 292.4 213 72.8
Nitab4.5_0014875g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 3.7e-77 292.0 207 76.8
QL06p003010 Quercus lobata HOM05D004620 ORTHO05D005999 3.7e-77 292.0 208 75.5
Sabra08G0115400 Salix brachista HOM05D004620 ORTHO05D005999 3.7e-77 292.0 165 85.5
Gohir.A12G004600 Gossypium hirsutum HOM05D004620 ORTHO05D005999 4.8e-77 291.6 200 76.5
Peaxi162Scf00092g00145 Petunia axillaris HOM05D004620 ORTHO05D005999 4.8e-77 291.6 214 73.4
Ca_24392_v3 Cicer arietinum L. HOM05D004620 ORTHO05D005999 6.3e-77 291.2 217 72.8
CDE05G2563 Ceratophyllum demersum HOM05D004620 ORTHO05D005999 8.2e-77 290.8 213 72.8
Migut.N00177 Erythranthe guttata HOM05D004620 ORTHO05D005999 8.2e-77 290.8 211 74.9
HanXRQChr03g0083391 Helianthus annuus HOM05D004620 ORTHO05D005999 8.2e-77 290.8 207 75.4
Manes.02G143000 Manihot esculenta HOM05D004620 ORTHO05D005999 1.1e-76 290.4 213 73.7
Prupe.1G011500 Prunus persica HOM05D004620 ORTHO05D005999 1.1e-76 290.4 214 72.0
MD13G1191300 Malus domestica HOM05D004620 ORTHO05D005999 2.4e-76 289.3 212 71.2
Manes.15G027800 Manihot esculenta HOM05D004620 ORTHO05D005999 2.4e-76 289.3 213 73.2
Psat4g210680 Pisum sativum HOM05D004620 ORTHO05D005999 2.4e-76 289.3 210 72.4
Cc03_g03590 Coffea canephora HOM05D004620 ORTHO05D005999 3.1e-76 288.9 211 73.5
CiPaw.01G164700 Carya illinoinensis HOM05D004620 ORTHO05D005999 5.3e-76 288.1 215 72.6
Hma1.2p1_0745F.1_g212030 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 6.9e-76 287.7 209 74.6
unitig_747.g21095 Utricularia gibba HOM05D004620 ORTHO05D005999 6.9e-76 287.7 209 73.2
ATR0332G058 Amborella trichopoda HOM05D004620 ORTHO05D005999 9.0e-76 287.3 206 70.9
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 9.0e-76 287.3 211 73.5
Lalb_Chr05g0210951 Lupinus albus HOM05D004620 ORTHO05D005999 9.0e-76 287.3 145 94.5
Potri.008G151600 Populus trichocarpa HOM05D004620 ORTHO05D005999 9.0e-76 287.3 207 73.4
Cfa015626 Carpinus fangiana HOM05D004620 ORTHO05D005999 1.2e-75 287.0 213 70.9
TWI53G0112 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 1.2e-75 287.0 214 72.4
Haze_00917 Corylus avellana HOM05D004620 ORTHO05D005999 1.5e-75 286.6 212 72.2
MBI04_g40949_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 1.5e-75 286.6 214 72.9
Nitab4.5_0000043g0320 Nicotiana tabacum HOM05D004620 ORTHO05D005999 2.6e-75 285.8 210 73.3
TPR.G37997 Trifolium pratense HOM05D004620 ORTHO05D005999 2.6e-75 285.8 212 70.8
Nitab4.5_0002946g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 3.4e-75 285.4 216 70.8
Os08g0560900 Oryza sativa ssp. japonica HOM05D004620 ORTHO05D005999 3.4e-75 285.4 207 74.4
Sed0012901 Sechium edule HOM05D004620 ORTHO05D005999 3.4e-75 285.4 206 73.3
Peaxi162Scf00642g00013 Petunia axillaris HOM05D004620 ORTHO05D005999 5.9e-75 284.6 209 73.7
Zm00001eb212520 Zea mays HOM05D004620 ORTHO05D005999 7.6e-75 284.3 208 72.6
Migut.G00327 Erythranthe guttata HOM05D004620 ORTHO05D005999 1.0e-74 283.9 214 72.4
Rhsim04G0206400 Rhododendron simsii HOM05D004620 ORTHO05D005999 1.3e-74 283.5 214 71.5
unitig_699.g19993 Utricularia gibba HOM05D004620 ORTHO05D005999 5.0e-74 281.6 210 71.9
MSTRG.9993 Avicennia marina HOM05D004620 ORTHO05D005999 6.5e-74 281.2 213 69.5
Sed0026123 Sechium edule HOM05D004620 ORTHO05D005999 5.5e-73 278.1 206 71.8
Gorai.005G042000 Gossypium raimondii HOM05D004620 ORTHO05D005999 1.6e-72 276.6 204 73.5
Gohir.D02G038100 Gossypium hirsutum HOM05D004620 ORTHO05D005999 4.6e-72 275.0 204 72.5
SEGI_38956 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 6.1e-72 274.6 164 81.7
Gohir.1Z049558 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.0e-71 273.9 203 72.9
Gohir.A02G031301 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.0e-71 273.9 203 72.9
Ah.02g126660 Amaranthus hybridus HOM05D004620 ORTHO05D005999 4.3e-70 268.5 206 70.9
Ah.02g126670 Amaranthus hybridus HOM05D004620 ORTHO05D005999 4.3e-70 268.5 206 70.9
Actinidia40184 Actinidia chinensis HOM05D004620 ORTHO05D005999 7.4e-70 267.7 198 71.7
AagrBONN_evm.TU.Sc2ySwM_344.3381 Anthoceros agrestis HOM05D004620 ORTHO05D005999 6.3e-69 264.6 207 66.7
SMO276G0022 Selaginella moellendorffii HOM05D004620 ORTHO05D005999 8.2e-69 264.2 146 84.2
Dinv13981 Davidia involucrata HOM05D004620 ORTHO05D005999 5.3e-68 261.5 195 72.3
AagrBONN_evm.TU.Sc2ySwM_344.3373 Anthoceros agrestis HOM05D004620 ORTHO05D005999 9.1e-68 260.8 206 65.0
Lj6P600T27 Lonicera japonica HOM05D004620 ORTHO05D005999 4.5e-67 258.5 206 70.4
SEGI_24049 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 7.7e-67 257.7 153 82.4
CBR_g29404 Chara braunii HOM05D004620 ORTHO05D005999 1.7e-66 256.5 157 77.7
Atru.chr5.1457 Acer truncatum HOM05D004620 ORTHO05D005999 3.8e-66 255.4 192 72.4
Pp3c13_2310 Physcomitrium patens HOM05D004620 ORTHO05D005999 8.5e-66 254.2 149 81.9
Pp3c3_5620 Physcomitrium patens HOM05D004620 ORTHO05D005999 8.5e-66 254.2 149 81.9
Pp3c6_1620 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.1e-65 253.8 157 78.3
Pp3c16_23780 Physcomitrium patens HOM05D004620 ORTHO05D005999 7.2e-65 251.1 207 65.2
CSS0012673 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 6.7e-63 244.6 210 66.2
Mapoly0141s0027 Marchantia polymorpha HOM05D004620 ORTHO05D005999 8.8e-63 244.2 216 61.6
Actinidia08500 Actinidia chinensis HOM05D004620 ORTHO05D005999 7.4e-62 241.1 184 70.1
Medtr1g104630 Medicago truncatula HOM05D004620 ORTHO05D005999 1.7e-61 240.0 209 65.1
HPP92_018490 Vanilla planifolia HOM05D004620 ORTHO05D005999 2.0e-59 233.0 149 76.5
PRCOL_00005075 Prasinoderma coloniale HOM05D004620 ORTHO05D005999 1.3e-58 230.3 143 77.6
MCO13G106 Micromonas commoda HOM05D004620 ORTHO05D005999 1.6e-56 223.4 203 58.6
Dinv44516 Davidia involucrata HOM05D004620 ORTHO05D005999 1.5e-54 216.9 214 57.9
Cre05.g238332 Chlamydomonas reinhardtii HOM05D004620 ORTHO05D005999 3.7e-53 212.2 200 58.5
Eucgr.H03534 Eucalyptus grandis HOM05D004620 ORTHO05D005999 1.0e-47 194.1 213 57.7
Actinidia23481 Actinidia chinensis HOM05D004620 ORTHO05D005999 4.8e-45 185.3 212 53.3
Hma1.2p1_1898F.1_g306910 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 7.2e-41 171.4 92 88.0
GSVIVG01017944001 Vitis vinifera HOM05D004620 ORTHO05D005999 3.5e-35 152.5 211 47.4
TAR633G1350 Trochodendron aralioides HOM05D004620 ORTHO05D005999 3.0e-31 139.4 72 91.7
Lsat_1_v5_gn_2_36061 Lactuca sativa HOM05D004620 ORTHO05D232623 2.0e-14 83.6 105 51.4
Lsat_1_v5_gn_1_32540 Lactuca sativa HOM05D004620 ORTHO05D232094 9.8e-14 81.3 105 51.4
Lsat_1_v5_gn_7_40400 Lactuca sativa HOM05D004620 ORTHO05D229089 4.9e-13 79.0 105 50.5
CAN.G907.14 Capsicum annuum HOM05D004620 ORTHO05D115364 2.7e-11 73.2 103 47.6


User provided reference genes

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