Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g02020 Schrenkiella parvula HOM05D006249 ORTHO05D007643 6.3e-120 434.1 217 100.0
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 7.1e-71 271.2 180 78.9
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 7.1e-71 271.2 180 78.9
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 3.0e-69 265.8 184 78.3
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 3.3e-68 262.3 182 75.8
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 5.6e-68 261.5 181 75.1
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 7.3e-68 261.2 184 77.2
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 6.2e-67 258.1 203 70.0
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 2.6e-65 252.7 181 74.0
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 8.4e-64 247.7 181 72.4
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 9.2e-63 244.2 182 72.0
BcaC07g42292 Brassica carinata HOM05D006249 ORTHO05D007643 8.7e-53 211.1 186 66.1
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 4.3e-52 208.8 160 70.6
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 1.1e-47 194.1 150 72.0
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 8.1e-43 177.9 192 53.6
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 4.0e-42 175.6 139 63.3
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 6.9e-42 174.9 193 53.4
Oeu018171.1 Olea europaea HOM05D006249 ORTHO05D007643 9.0e-42 174.5 167 55.7
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 5.8e-41 171.8 112 78.6
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 5.8e-41 171.8 187 50.8
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 5.8e-41 171.8 128 65.6
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 1.3e-40 170.6 194 51.0
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 1.7e-40 170.2 192 50.0
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 1.7e-40 170.2 193 51.3
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 2.2e-40 169.9 168 55.4
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 2.9e-40 169.5 192 50.5
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 4.9e-40 168.7 192 50.5
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 1.4e-39 167.2 192 50.5
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 1.4e-39 167.2 177 50.8
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 1.9e-39 166.8 183 52.5
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 1.9e-39 166.8 188 51.1
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 1.9e-39 166.8 105 73.3
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 1.2e-38 164.1 128 61.7
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 1.2e-38 164.1 128 61.7
CSS0032391 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 2.1e-38 163.3 198 48.5
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 4.6e-38 162.2 128 62.5
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 6.0e-38 161.8 126 63.5
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 7.9e-38 161.4 198 48.0
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 7.9e-38 161.4 183 50.8
TWI18G0435 Tripterygium wilfordii HOM05D006249 ORTHO05D007643 1.3e-37 160.6 190 48.9
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 3.0e-37 159.5 128 61.7
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 3.0e-37 159.5 118 64.4
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 3.0e-37 159.5 194 47.4
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 3.9e-37 159.1 126 61.9
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 3.9e-37 159.1 158 55.1
Sed0010412 Sechium edule HOM05D006249 ORTHO05D007643 6.7e-37 158.3 126 61.1
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 8.7e-37 157.9 192 49.0
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 1.5e-36 157.1 191 47.6
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 1.9e-36 156.8 128 60.2
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 5.6e-36 155.2 191 48.7
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 7.4e-36 154.8 130 59.2
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 1.6e-35 153.7 128 59.4
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 1.6e-35 153.7 128 60.2
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 2.1e-35 153.3 194 48.5
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 4.8e-35 152.1 112 67.0
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 4.8e-35 152.1 112 67.0
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 4.8e-35 152.1 128 59.4
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 6.2e-35 151.8 128 58.6
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 8.1e-35 151.4 195 44.6
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 8.1e-35 151.4 139 54.7
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 8.1e-35 151.4 130 59.2
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 1.1e-34 151.0 169 47.9
Ca_15970_v3 Cicer arietinum L. HOM05D006249 ORTHO05D007643 1.4e-34 150.6 113 62.8
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 4.0e-34 149.1 192 43.8
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 6.9e-34 148.3 128 57.8
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 9.0e-34 147.9 128 53.9
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.2e-33 147.5 91 74.7
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.2e-33 147.5 91 74.7
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 1.2e-33 147.5 165 50.9
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 1.5e-33 147.1 112 66.1
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 1.5e-33 147.1 164 50.6
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 2.6e-33 146.4 190 44.7
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 4.5e-33 145.6 128 56.2
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 4.5e-33 145.6 155 52.3
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 4.5e-33 145.6 142 54.2
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 1.0e-32 144.4 101 66.3
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 2.2e-32 143.3 128 54.7
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 2.2e-32 143.3 128 54.7
Phvul.001G156700 Phaseolus vulgaris HOM05D006249 ORTHO05D007643 3.8e-32 142.5 142 54.2
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 3.8e-32 142.5 193 45.1
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 6.5e-32 141.7 128 56.2
Medtr4g076080 Medicago truncatula HOM05D006249 ORTHO05D007643 6.5e-32 141.7 128 55.5
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 8.4e-32 141.4 143 53.8
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 3.2e-31 139.4 105 63.8
unitig_0.g1129 Utricularia gibba HOM05D006249 ORTHO05D007643 1.6e-30 137.1 124 52.4
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 4.6e-30 135.6 128 53.1
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 6.0e-30 135.2 189 45.5
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 2.3e-29 133.3 124 54.0
Aqoxy2G03531 Aquilegia oxysepala HOM05D006249 ORTHO05D007643 3.0e-29 132.9 124 55.6
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 7.4e-28 128.3 124 53.2
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 9.6e-28 127.9 114 56.1
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 8.2e-27 124.8 128 50.0
arahy.Tifrunner.gnm1.ann1.U7WVQR Arachis hypogaea HOM05D006249 ORTHO05D007643 1.5e-25 120.6 106 54.7
Hund30725 Selenicereus undatus HOM05D006249 ORTHO05D007643 1.7e-24 117.1 89 61.8
Glyma.03G158832 Glycine max HOM05D006249 ORTHO05D007643 1.1e-23 114.4 70 78.6
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 7.2e-23 111.7 124 46.8
RcHm_v2.0_Chr4g0397901 Rosa chinensis HOM05D006249 ORTHO05D007643 7.2e-23 111.7 75 69.3
Hund30696 Selenicereus undatus HOM05D006249 ORTHO05D007643 2.1e-22 110.2 89 58.4
EL10Ac5g10475 Beta vulgaris HOM05D006249 ORTHO05D007643 2.3e-21 106.7 86 64.0
Mapoly0096s0074 Marchantia polymorpha HOM05D006249 ORTHO05D007643 1.1e-20 104.4 116 50.9
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 1.9e-20 103.6 132 43.2
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 3.3e-20 102.8 129 45.0
AagrBONN_evm.TU.Sc2ySwM_228.3891 Anthoceros agrestis HOM05D006249 ORTHO05D007643 9.7e-20 101.3 113 53.1
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 1.3e-19 100.9 149 38.3
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 4.8e-19 99.0 186 40.9
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 9.1e-18 94.7 87 57.5
SMO358G0282 Selaginella moellendorffii HOM05D000331 ORTHO05D002018 5.9e-17 92.0 89 56.2
SEGI_12640 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 7.7e-17 91.7 63 63.5
CBR_g19145 Chara braunii HOM05D006249 ORTHO05D007643 3.8e-16 89.4 102 50.0
Pp3c17_16800 Physcomitrium patens HOM05D006249 ORTHO05D007643 5.0e-16 89.0 124 41.9
arahy.Tifrunner.gnm1.ann1.FBQK8B Arachis hypogaea HOM05D006249 ORTHO05D007643 3.2e-15 86.3 50 74.0
arahy.Tifrunner.gnm1.ann1.AHQ53Z Arachis hypogaea HOM05D006249 ORTHO05D007643 7.2e-15 85.1 50 72.0
SHI29847 Sapria himalayana HOM05D006249 ORTHO05D007643 5.7e-12 75.5 91 45.1
Cre02.g101000 Chlamydomonas reinhardtii HOM05D006249 ORTHO05D007643 1.8e-10 70.5 115 37.4
SHI29011 Sapria himalayana HOM05D006249 ORTHO05D007643 1.0e-08 64.7 93 41.9
SHI31647 Sapria himalayana HOM05D006249 ORTHO05D007643 1.9e-07 60.5 61 45.9
SHI54291 Sapria himalayana HOM05D006249 ORTHO05D007643 3.2e-07 59.7 81 43.2
Actinidia21156 Actinidia chinensis HOM05D006249 ORTHO05D007643 4.2e-07 59.3 128 33.6
SHI49503 Sapria himalayana HOM05D000624 ORTHO05D000495 4.2e-07 59.3 50 60.0
SHI27267 Sapria himalayana HOM05D000624 ORTHO05D000495 5.5e-07 58.9 63 47.6
MCO14G208 Micromonas commoda HOM05D006249 ORTHO05D007643 7.2e-07 58.5 88 40.9
SHI36882 Sapria himalayana HOM05D006249 ORTHO05D007643 3.6e-06 56.2 67 44.8
SHI41947 Sapria himalayana HOM05D000624 ORTHO05D000495 6.1e-06 55.5 50 56.0
SHI45616 Sapria himalayana HOM05D000624 ORTHO05D000495 6.1e-06 55.5 50 56.0


User provided reference genes

Program Settings