Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 5.5e-127 457.6 226 100.0
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.9e-106 389.4 226 87.6
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 1.3e-104 383.3 227 85.5
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 7.3e-103 377.5 227 84.6
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.7e-99 366.3 230 83.5
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 1.2e-97 360.1 228 82.0
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 1.2e-97 360.1 228 81.6
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 1.0e-96 357.1 218 83.9
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 3.9e-96 355.1 227 81.5
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 2.1e-94 349.4 231 81.0
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 1.9e-87 326.2 227 74.9
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 5.2e-85 318.2 215 78.1
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.1e-79 300.4 234 70.1
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 5.3e-69 265.0 151 80.1
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 5.8e-68 261.5 181 71.3
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 5.8e-68 261.5 201 64.7
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 9.9e-68 260.8 219 61.2
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 1.7e-67 260.0 228 60.5
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 2.2e-67 259.6 203 65.0
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 2.9e-67 259.2 164 73.8
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 8.4e-67 257.7 224 60.7
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 1.4e-66 256.9 196 66.3
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 1.9e-66 256.5 181 66.9
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 2.4e-66 256.1 146 79.5
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 3.2e-66 255.8 206 61.2
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 3.2e-66 255.8 225 59.1
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 4.2e-66 255.4 223 61.0
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 7.1e-66 254.6 224 59.4
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 7.1e-66 254.6 185 68.1
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 7.1e-66 254.6 201 63.7
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 7.1e-66 254.6 235 58.3
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 9.3e-66 254.2 187 66.8
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 2.1e-65 253.1 151 74.8
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 2.7e-65 252.7 194 62.9
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 3.5e-65 252.3 162 72.2
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 6.0e-65 251.5 177 66.1
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 6.0e-65 251.5 205 61.5
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 6.0e-65 251.5 151 76.8
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 7.9e-65 251.1 190 65.8
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.3e-64 250.4 146 75.3
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 1.3e-64 250.4 162 72.2
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 1.8e-64 250.0 140 87.9
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 1.8e-64 250.0 183 66.7
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 1.8e-64 250.0 188 63.3
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 1.8e-64 250.0 194 64.4
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 1.8e-64 250.0 156 73.7
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 1.8e-64 250.0 156 73.7
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 2.3e-64 249.6 145 75.9
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 2.3e-64 249.6 151 76.2
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 3.0e-64 249.2 195 63.6
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 3.9e-64 248.8 204 59.8
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 5.1e-64 248.4 153 73.9
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 6.7e-64 248.1 179 67.0
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 1.1e-63 247.3 212 60.4
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.5e-63 246.9 153 72.5
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 1.5e-63 246.9 189 64.6
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 4.3e-63 245.4 226 56.2
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 5.6e-63 245.0 213 57.3
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 7.4e-63 244.6 152 72.4
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 2.1e-62 243.0 173 68.2
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 2.1e-62 243.0 183 65.6
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 3.7e-62 242.3 150 75.3
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 1.4e-61 240.4 197 62.9
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 1.4e-61 240.4 145 73.1
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 1.4e-61 240.4 152 71.7
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 1.8e-61 240.0 166 70.5
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 2.4e-61 239.6 199 59.8
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 4.0e-61 238.8 161 68.9
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 6.9e-61 238.0 148 75.0
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 3.4e-60 235.7 145 71.0
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 1.3e-59 233.8 141 73.8
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 1.3e-59 233.8 226 53.5
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.7e-59 233.4 161 64.6
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 1.7e-59 233.4 159 67.9
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 3.8e-59 232.3 161 64.0
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 6.5e-59 231.5 204 57.8
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 6.5e-59 231.5 138 74.6
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 8.4e-59 231.1 184 60.9
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 1.1e-58 230.7 165 67.3
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.1e-58 230.7 161 63.4
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 7.1e-58 228.0 201 57.7
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.1e-57 226.5 161 65.2
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.1e-57 226.5 161 65.2
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 2.7e-57 226.1 136 75.0
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 6.0e-57 224.9 152 69.1
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 7.9e-57 224.6 166 64.5
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 2.3e-56 223.0 151 66.2
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 5.1e-56 221.9 169 60.9
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 5.1e-56 221.9 183 58.5
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 6.7e-56 221.5 148 69.6
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 1.1e-55 220.7 128 77.3
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 1.1e-55 220.7 138 73.2
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 1.5e-55 220.3 227 52.9
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 5.7e-55 218.4 205 55.6
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 5.7e-55 218.4 149 67.1
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 1.6e-54 216.9 172 62.2
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 4.8e-54 215.3 177 60.5
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 8.2e-54 214.5 156 64.1
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 1.1e-53 214.2 164 62.2
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 4.1e-53 212.2 162 61.7
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 1.5e-52 210.3 330 38.5
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 1.5e-52 210.3 206 52.9
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 1.5e-52 210.3 131 73.3
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 1.5e-52 210.3 152 60.5
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 3.4e-52 209.1 145 62.8
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 7.6e-52 208.0 145 63.4
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 7.6e-52 208.0 145 62.8
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 5.0e-51 205.3 167 61.7
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 1.9e-50 203.4 159 60.4
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 1.9e-50 203.4 189 54.0
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 4.2e-50 202.2 147 59.9
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 5.5e-50 201.8 147 59.2
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 5.5e-50 201.8 147 59.2
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 5.5e-50 201.8 147 59.2
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 7.2e-50 201.4 147 59.2
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 7.2e-50 201.4 147 59.2
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 2.1e-49 199.9 131 68.7
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 3.5e-49 199.1 199 49.2
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 4.6e-49 198.7 186 53.2
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 6.1e-49 198.4 131 67.2
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 1.3e-48 197.2 147 57.8
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 1.3e-48 197.2 147 57.8
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 2.3e-48 196.4 147 57.8
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 3.0e-48 196.1 223 48.0
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 5.1e-48 195.3 177 53.7
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 2.5e-47 193.0 174 56.9
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 7.4e-47 191.4 117 69.2
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 4.1e-45 185.7 142 56.3
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 6.9e-45 184.9 143 55.2
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 2.6e-44 183.0 142 55.6
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 3.2e-42 176.0 162 55.6
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 9.4e-42 174.5 106 72.6
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 1.2e-41 174.1 202 50.0
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 7.9e-41 171.4 138 54.3
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 3.0e-40 169.5 124 65.3
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 5.1e-40 168.7 128 60.9
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 5.7e-39 165.2 143 45.5
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 9.7e-39 164.5 90 78.9
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 1.1e-37 161.0 195 47.7
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 2.4e-37 159.8 166 50.0
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 9.1e-37 157.9 90 73.3
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 5.9e-36 155.2 90 73.3
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 1.0e-35 154.5 122 53.3
BolC8t52839H Brassica oleracea HOM05D004068 ORTHO05D004700 3.9e-32 142.5 117 66.7
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 2.6e-31 139.8 197 39.1
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 1.7e-30 137.1 141 43.3
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 3.7e-30 136.0 128 53.9
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 5.3e-29 132.1 94 64.9
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 7.0e-29 131.7 178 43.8
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 9.1e-29 131.3 123 55.3
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 1.6e-28 130.6 142 52.1
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 2.2e-27 126.7 108 56.5
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 2.9e-27 126.3 148 45.9
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 2.9e-27 126.3 128 51.6
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 6.5e-27 125.2 170 36.5
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 9.4e-26 121.3 160 43.1
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 9.4e-26 121.3 64 78.1
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 9.7e-23 111.3 68 69.1
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 4.8e-22 109.0 65 69.2
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 1.9e-18 97.1 74 60.8
TPR.G3034 Trifolium pratense HOM05D004068 ORTHO05D004700 2.6e-15 86.7 55 74.5
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 4.1e-13 79.3 85 48.2
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 3.8e-11 72.8 95 42.1
BcaC03g18203 Brassica carinata HOM05D004068 ORTHO05D004700 8.5e-11 71.6 52 59.6
A02p42700 Brassica napus HOM05D004068 ORTHO05D004700 1.5e-10 70.9 78 46.2
C02p62690 Brassica napus HOM05D004068 ORTHO05D004700 1.5e-10 70.9 50 60.0
A09p01340 Brassica napus HOM05D004068 ORTHO05D004700 3.2e-10 69.7 81 45.7
Os01g0328600 Oryza sativa ssp. japonica HOM05D004068 ORTHO05D004700 9.4e-10 68.2 43 65.1
Oeu044746.1 Olea europaea HOM05D004068 ORTHO05D004700 2.7e-09 66.6 89 41.6
Pp3c15_19030 Physcomitrium patens HOM05D060542 ORTHO05D043949 4.0e-08 62.8 154 30.5


User provided reference genes

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