Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 4.3e-109 398.3 243 100.0
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 5.3e-99 364.8 244 90.6
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 5.6e-93 344.7 243 78.6
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 5.6e-93 344.7 243 78.6
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 4.0e-91 338.6 243 77.4
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 4.0e-91 338.6 243 77.4
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 8.4e-89 330.9 245 80.0
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 2.5e-85 319.3 236 80.1
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 2.5e-85 319.3 243 80.2
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 3.3e-85 318.9 243 80.2
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 5.3e-83 311.6 242 68.2
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 5.8e-82 308.1 241 77.2
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 2.2e-81 306.2 241 77.6
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 6.0e-79 298.1 219 75.8
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 8.4e-73 277.7 169 78.7
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 8.5e-65 251.1 245 55.9
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 2.5e-56 223.0 169 60.9
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 9.7e-53 211.1 146 59.6
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 1.7e-52 210.3 147 61.2
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 2.2e-52 209.9 146 59.6
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 2.8e-52 209.5 167 55.7
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 4.8e-52 208.8 147 60.5
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 4.8e-52 208.8 146 58.9
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 6.3e-52 208.4 147 60.5
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 6.3e-52 208.4 146 58.9
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 8.2e-52 208.0 167 55.1
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.4e-51 207.2 147 59.9
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 1.4e-51 207.2 163 56.4
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 1.4e-51 207.2 163 56.4
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 1.4e-51 207.2 147 59.9
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.8e-51 206.8 146 58.2
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 2.4e-51 206.5 146 58.2
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 3.1e-51 206.1 145 60.0
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 3.1e-51 206.1 166 54.8
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 3.1e-51 206.1 145 60.0
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 4.1e-51 205.7 163 55.2
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 9.1e-51 204.5 145 58.6
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 9.1e-51 204.5 167 54.5
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 1.5e-50 203.8 145 59.3
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 1.5e-50 203.8 167 53.9
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 2.0e-50 203.4 147 59.2
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 7.7e-50 201.4 145 58.6
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 1.0e-49 201.1 145 56.6
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 1.0e-49 201.1 146 57.5
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 1.3e-49 200.7 145 58.6
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 1.3e-49 200.7 145 57.9
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 1.3e-49 200.7 145 58.6
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 2.9e-49 199.5 145 57.9
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 2.9e-49 199.5 146 56.8
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 3.8e-49 199.1 146 56.8
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 6.5e-49 198.4 145 55.9
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.5e-48 197.2 175 53.7
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 1.9e-48 196.8 145 56.6
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 1.9e-48 196.8 144 58.3
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 1.9e-48 196.8 145 56.6
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 1.9e-48 196.8 146 56.8
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 1.9e-48 196.8 144 58.3
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 2.5e-48 196.4 145 57.9
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 2.5e-48 196.4 144 58.3
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 2.5e-48 196.4 145 56.6
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 2.5e-48 196.4 146 56.2
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 5.5e-48 195.3 145 55.9
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 5.5e-48 195.3 145 56.6
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 5.5e-48 195.3 167 52.1
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 1.2e-47 194.1 145 56.6
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 1.6e-47 193.7 145 54.5
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 2.7e-47 193.0 148 56.1
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 4.7e-47 192.2 145 56.6
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 6.1e-47 191.8 144 56.9
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 8.0e-47 191.4 145 55.2
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 8.0e-47 191.4 145 53.8
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 1.0e-46 191.0 144 57.6
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 1.4e-46 190.7 145 53.8
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 1.4e-46 190.7 154 52.6
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 1.8e-46 190.3 144 54.9
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 1.8e-46 190.3 167 50.9
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 2.3e-46 189.9 141 57.4
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 2.3e-46 189.9 164 53.0
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 5.2e-46 188.7 172 48.8
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 5.2e-46 188.7 145 55.2
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 8.8e-46 188.0 145 55.2
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 1.1e-45 187.6 145 53.8
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 1.1e-45 187.6 145 53.8
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 2.6e-45 186.4 145 52.4
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 9.7e-45 184.5 136 58.1
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 1.3e-44 184.1 144 54.2
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 1.3e-44 184.1 156 52.6
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 1.3e-44 184.1 144 52.8
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 2.8e-44 183.0 169 47.3
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 2.8e-44 183.0 144 54.2
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 4.8e-44 182.2 137 56.2
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 1.1e-43 181.0 153 52.3
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 1.8e-43 180.3 153 51.6
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 2.4e-43 179.9 141 52.5
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 2.4e-43 179.9 167 48.5
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 4.1e-43 179.1 146 52.1
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 5.3e-43 178.7 146 52.1
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 5.3e-43 178.7 145 52.4
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 2.0e-42 176.8 140 55.7
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 2.6e-42 176.4 121 59.5
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.6e-42 176.4 146 52.1
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.6e-42 176.4 146 52.1
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 7.7e-42 174.9 146 50.7
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 1.0e-41 174.5 151 51.0
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 1.7e-41 173.7 146 50.7
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 3.8e-41 172.6 146 49.3
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 6.5e-41 171.8 149 50.3
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 8.5e-41 171.4 121 58.7
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 2.5e-40 169.9 130 55.4
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 5.5e-40 168.7 146 49.3
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 2.7e-39 166.4 198 40.4
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 4.7e-39 165.6 162 47.5
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 8.0e-39 164.9 106 64.2
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 8.0e-39 164.9 143 46.2
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 2.3e-38 163.3 148 48.6
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 3.0e-38 162.9 121 55.4
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 3.0e-38 162.9 121 52.9
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 5.2e-38 162.2 118 57.6
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 1.2e-37 161.0 154 46.8
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 3.4e-37 159.5 199 40.7
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 9.7e-37 157.9 143 44.8
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 1.3e-36 157.5 107 57.9
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 1.1e-35 154.5 144 42.4
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 1.1e-35 154.5 106 56.6
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 1.1e-35 154.5 194 41.2
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 1.1e-35 154.5 165 45.5
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 1.8e-35 153.7 107 56.1
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 2.4e-35 153.3 142 43.7
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 2.4e-35 153.3 177 41.8
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 2.0e-34 150.2 220 35.9
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 2.7e-31 139.8 106 53.8
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 1.8e-30 137.1 133 42.1
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 5.7e-29 132.1 89 58.4
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 7.5e-29 131.7 143 35.0
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 1.7e-28 130.6 156 43.6
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 1.8e-27 127.1 96 53.1
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 3.5e-26 122.9 119 40.3
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 4.5e-26 122.5 152 39.5
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 5.9e-26 122.1 145 40.0
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 6.6e-25 118.6 90 52.2
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 8.6e-25 118.2 140 35.0
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.1e-24 117.9 90 51.1
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 1.9e-24 117.1 90 50.0
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 4.2e-24 115.9 89 51.7
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 5.5e-24 115.5 154 35.1
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 4.4e-21 105.9 169 30.8
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 1.8e-19 100.5 146 37.0
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 5.9e-18 95.5 81 49.4
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 5.9e-18 95.5 82 48.8
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 2.3e-17 93.6 144 36.8
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 2.9e-17 93.2 72 52.8
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 3.9e-17 92.8 64 53.1
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 9.5e-16 88.2 148 33.1
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 6.1e-15 85.5 72 48.6
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 8.0e-15 85.1 68 50.0
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 4.0e-14 82.8 68 48.5
TPR.G3034 Trifolium pratense HOM05D004068 ORTHO05D004700 1.5e-13 80.9 55 65.5
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 2.6e-13 80.1 64 51.6
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 1.7e-12 77.4 64 46.9
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 3.7e-12 76.3 62 51.6
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 1.1e-06 58.2 40 55.0
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 8.9e-06 55.1 85 31.8


User provided reference genes

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