Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g01000 Schrenkiella parvula HOM05D006960 ORTHO05D008699 2.0e-144 515.8 269 100.0
Thhalv10008544m.g Eutrema salsugineum HOM05D006960 ORTHO05D008699 2.4e-121 439.1 256 89.5
Carub.0001s0093 Capsella rubella HOM05D006960 ORTHO05D008699 2.0e-115 419.5 271 82.7
BolC8t52877H Brassica oleracea HOM05D006960 ORTHO05D008699 6.4e-114 414.5 257 85.6
BraA09t42243Z Brassica rapa HOM05D006960 ORTHO05D008699 2.4e-113 412.5 257 84.8
C08p53630 Brassica napus HOM05D006960 ORTHO05D008699 3.5e-112 408.7 256 85.2
A09p69060 Brassica napus HOM05D006960 ORTHO05D008699 3.0e-111 405.6 256 84.8
AT1G01290 Arabidopsis thaliana HOM05D006960 ORTHO05D008699 7.6e-107 391.0 272 79.0
CARHR001180 Cardamine hirsuta HOM05D006960 ORTHO05D008699 6.4e-106 387.9 264 81.4
AL1G11170 Arabidopsis lyrata HOM05D006960 ORTHO05D008699 3.2e-97 359.0 231 82.7
Aa31LG5G970 Aethionema arabicum HOM05D000451 ORTHO05D000351 4.3e-78 295.4 208 76.0
Gorai.007G109000 Gossypium raimondii HOM05D006960 ORTHO05D008699 5.9e-75 285.0 254 63.4
Gohir.D11G102000 Gossypium hirsutum HOM05D006960 ORTHO05D008699 7.6e-75 284.6 254 63.0
COL.COLO4_21448 Corchorus olitorius HOM05D006960 ORTHO05D008699 5.0e-74 282.0 252 62.3
Gohir.A11G097200 Gossypium hirsutum HOM05D006960 ORTHO05D008699 1.4e-73 280.4 249 62.7
Thecc.01G341400 Theobroma cacao HOM05D006960 ORTHO05D008699 2.1e-72 276.6 253 61.7
FAN06G3195 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.7e-72 276.2 250 62.0
Ciclev10022060m.g Citrus clementina HOM05D006960 ORTHO05D008699 3.6e-72 275.8 245 61.6
Potri.014G099500 Populus trichocarpa HOM05D006960 ORTHO05D008699 4.6e-72 275.4 250 61.2
FvH4_7g16680 Fragaria vesca HOM05D006960 ORTHO05D008699 6.1e-72 275.0 250 62.0
FAN06G2002 Fragaria x ananassa HOM05D006960 ORTHO05D008699 3.0e-71 272.7 249 61.0
FAN10G0984 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.1e-70 270.8 250 61.6
Haze_15666 Corylus avellana HOM05D000451 ORTHO05D000351 1.9e-70 270.0 263 58.2
CSS0028122 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 2.5e-70 269.6 247 61.1
MELO3C024139.2 Cucumis melo HOM05D006960 ORTHO05D008699 2.5e-70 269.6 247 60.7
Cpa.g.sc46.111 Carica papaya HOM05D006960 ORTHO05D008699 4.3e-70 268.9 243 63.0
ClCG09G009460 Citrullus lanatus HOM05D006960 ORTHO05D008699 4.3e-70 268.9 247 61.5
CSS0036785 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 5.7e-70 268.5 247 60.7
Sed0021558 Sechium edule HOM05D006960 ORTHO05D008699 7.4e-70 268.1 248 60.5
FAN10G4095 Fragaria x ananassa HOM05D006960 ORTHO05D008699 9.7e-70 267.7 240 62.5
Lalb_Chr06g0163941 Lupinus albus HOM05D006960 ORTHO05D008699 9.7e-70 267.7 250 61.6
FAN01G3090 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.3e-69 267.3 247 61.1
RcHm_v2.0_Chr1g0359831 Rosa chinensis HOM05D006960 ORTHO05D008699 3.7e-69 265.8 251 61.4
QL04p060559 Quercus lobata HOM05D006960 ORTHO05D008699 1.4e-68 263.8 245 61.2
TAR629G1073 Trochodendron aralioides HOM05D006960 ORTHO05D008699 1.4e-68 263.8 248 59.3
PGR142G3971 Punica granatum HOM05D006960 ORTHO05D008699 2.4e-68 263.1 249 59.8
CANSAT56G1276 Cannabis sativa HOM05D006960 ORTHO05D008699 3.1e-68 262.7 246 60.2
Prupe.2G189500 Prunus persica HOM05D006960 ORTHO05D008699 4.1e-68 262.3 248 60.5
ECA236G0577 Erigeron canadensis HOM05D006960 ORTHO05D008699 5.3e-68 261.9 245 58.8
Glyma.20G102700 Glycine max HOM05D006960 ORTHO05D008699 6.9e-68 261.5 244 60.7
Psat6g234040 Pisum sativum HOM05D006960 ORTHO05D008699 9.1e-68 261.2 248 59.3
Atru.chr5.678 Acer truncatum HOM05D006960 ORTHO05D008699 1.5e-67 260.4 245 60.0
TWI14G0597 Tripterygium wilfordii HOM05D006960 ORTHO05D008699 1.5e-67 260.4 250 59.6
Phvul.007G014400 Phaseolus vulgaris HOM05D006960 ORTHO05D008699 2.6e-67 259.6 244 59.4
DCAR_021504 Daucus carota HOM05D006960 ORTHO05D008699 3.4e-67 259.2 251 58.6
Lj5g0001318 Lotus japonicus HOM05D006960 ORTHO05D008699 3.4e-67 259.2 248 58.1
MD07G1150800 Malus domestica HOM05D006960 ORTHO05D008699 3.4e-67 259.2 248 58.5
Manes.05G022300 Manihot esculenta HOM05D006960 ORTHO05D008699 5.9e-67 258.5 252 58.7
CAN.G1178.29 Capsicum annuum HOM05D006960 ORTHO05D008699 7.7e-67 258.1 245 58.0
Ca_11259_v3 Cicer arietinum L. HOM05D006960 ORTHO05D008699 1.0e-66 257.7 248 59.7
Rhsim01G0172900 Rhododendron simsii HOM05D006960 ORTHO05D008699 1.3e-66 257.3 247 59.5
Rhsim04G0222700 Rhododendron simsii HOM05D006960 ORTHO05D008699 2.2e-66 256.5 247 59.1
vmacro12673 Vaccinium macrocarpon HOM05D006960 ORTHO05D008699 2.2e-66 256.5 245 58.0
Sc01g0002630 Simmondsia chinensis HOM05D000016 ORTHO05D007083 2.9e-66 256.1 248 57.7
VMungo0720G2201 Vigna mungo HOM05D006960 ORTHO05D008699 8.5e-66 254.6 245 60.4
EL10Ac1g00259 Beta vulgaris HOM05D006960 ORTHO05D008699 1.1e-65 254.2 245 59.6
Eucgr.E00049 Eucalyptus grandis HOM05D006960 ORTHO05D008699 1.1e-65 254.2 248 58.1
GSVIVG01027159001 Vitis vinifera HOM05D006960 ORTHO05D008699 1.1e-65 254.2 236 61.4
Solyc05g050570.3 Solanum lycopersicum HOM05D006960 ORTHO05D008699 3.2e-65 252.7 236 60.6
Nitab4.5_0004506g0020 Nicotiana tabacum HOM05D006960 ORTHO05D008699 4.2e-65 252.3 250 58.0
Aqoxy6G00316 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 5.5e-65 251.9 248 58.9
Sopen05g029010 Solanum pennellii HOM05D006960 ORTHO05D008699 5.5e-65 251.9 236 60.2
PGSC0003DMG400007011 Solanum tuberosum HOM05D006960 ORTHO05D008699 1.2e-64 250.8 251 58.6
Migut.B01880 Erythranthe guttata HOM05D006960 ORTHO05D008699 2.1e-64 250.0 253 56.9
Nitab4.5_0000258g0220 Nicotiana tabacum HOM05D006960 ORTHO05D008699 2.1e-64 250.0 250 58.0
MSTRG.17349 Avicennia marina HOM05D006960 ORTHO05D008699 2.7e-64 249.6 247 57.9
Medtr5g015740 Medicago truncatula HOM05D006960 ORTHO05D008699 4.6e-64 248.8 255 59.2
Lsat_1_v5_gn_8_13101 Lactuca sativa HOM05D006960 ORTHO05D008699 7.9e-64 248.1 245 56.3
TPR.G4075 Trifolium pratense HOM05D006960 ORTHO05D008699 7.9e-64 248.1 242 61.2
AUR62004502 Chenopodium quinoa HOM05D006960 ORTHO05D008699 1.4e-63 247.3 250 56.0
Cc01_g12480 Coffea canephora HOM05D006960 ORTHO05D008699 1.4e-63 247.3 240 57.5
Medtr1g114590 Medicago truncatula HOM05D006960 ORTHO05D008699 2.3e-63 246.5 255 58.8
SalBow3G0783 Salvia bowleyana HOM05D006960 ORTHO05D008699 3.0e-63 246.1 246 58.1
Sabra14G0073000 Salix brachista HOM05D006960 ORTHO05D008699 5.1e-63 245.4 221 63.3
HanXRQChr06g0170731 Helianthus annuus HOM05D006960 ORTHO05D008699 1.5e-62 243.8 237 57.8
Actinidia20248 Actinidia chinensis HOM05D000567 ORTHO05D001981 2.6e-62 243.0 218 62.4
Nn8g41032 Nelumbo nucifera HOM05D006960 ORTHO05D008699 9.7e-62 241.1 217 62.2
Peaxi162Scf00716g00022 Petunia axillaris HOM05D006960 ORTHO05D008699 9.7e-62 241.1 215 63.3
SGA_v2.0_scaffold22G09984 Striga asiatica HOM05D006960 ORTHO05D008699 1.7e-61 240.4 249 57.4
MBI06_g44795_MAGBIO Magnolia biondii HOM05D006960 ORTHO05D008699 8.2e-61 238.0 248 56.9
PSO063G6262 Papaver somniferum HOM05D006960 ORTHO05D008699 1.4e-60 237.3 219 59.8
Hund16718 Selenicereus undatus HOM05D006960 ORTHO05D008699 3.1e-60 236.1 232 56.9
CAN.G1385.4 Capsicum annuum HOM05D006960 ORTHO05D008699 4.1e-60 235.7 209 62.7
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 1.2e-59 234.2 173 72.3
Aqoxy3G01066 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 5.9e-59 231.9 214 60.3
Dinv22299 Davidia involucrata HOM05D006960 ORTHO05D008699 7.7e-59 231.5 232 57.3
arahy.Tifrunner.gnm1.ann1.CCVT8N Arachis hypogaea HOM05D006960 ORTHO05D008699 3.8e-58 229.2 166 74.1
Oeu007886.1 Olea europaea HOM05D006960 ORTHO05D008699 5.0e-58 228.8 248 54.4
Oeu014974.1 Olea europaea HOM05D006960 ORTHO05D008699 5.0e-58 228.8 248 54.4
Os04g0460500 Oryza sativa ssp. japonica HOM05D006960 ORTHO05D008699 6.5e-58 228.4 216 59.3
PSO170G4910 Papaver somniferum HOM05D006960 ORTHO05D008699 4.2e-57 225.7 209 59.3
unitig_899.g14796 Utricularia gibba HOM05D006960 ORTHO05D008699 1.6e-56 223.8 214 57.0
Zm00001eb080710 Zea mays HOM05D006960 ORTHO05D008699 7.9e-56 221.5 245 53.5
HPP92_002925 Vanilla planifolia HOM05D006960 ORTHO05D008699 4.8e-53 212.2 152 71.1
ATR0602G026 Amborella trichopoda HOM05D006960 ORTHO05D008699 2.9e-50 203.0 210 54.8
Pp3c20_11370 Physcomitrium patens HOM05D006960 ORTHO05D008699 3.0e-47 193.0 236 51.3
Mapoly0053s0024 Marchantia polymorpha HOM05D006960 ORTHO05D008699 4.8e-45 185.7 243 49.0
SMO351G0341 Selaginella moellendorffii HOM05D006960 ORTHO05D008699 3.8e-42 176.0 206 51.9
AUR62014969 Chenopodium quinoa HOM05D006960 ORTHO05D008699 3.6e-40 169.5 250 44.0
MCO01G113 Micromonas commoda HOM05D006960 ORTHO05D008699 2.6e-38 163.3 154 57.8
Cre08.g361050 Chlamydomonas reinhardtii HOM05D006960 ORTHO05D008699 6.3e-37 158.7 208 48.1
CBR_g23014 Chara braunii HOM05D006960 ORTHO05D008699 8.3e-37 158.3 173 51.4
CDE10G0236 Ceratophyllum demersum HOM05D006960 ORTHO05D008699 2.4e-36 156.8 233 42.9
CsaV3_7G025390 Cucumis sativus L. HOM05D006960 ORTHO05D008699 4.5e-35 152.5 177 50.3
HPP92_028636 Vanilla planifolia HOM05D006960 ORTHO05D008699 3.8e-34 149.4 235 43.4
CDE10G0916 Ceratophyllum demersum HOM05D000108 ORTHO05D001781 1.5e-33 147.5 112 66.1
AUR62023452 Chenopodium quinoa HOM05D000040 ORTHO05D000759 1.6e-32 144.1 231 42.4
VMungo0964G0001 Vigna mungo HOM05D006960 ORTHO05D008699 1.4e-31 141.0 153 48.4
FAN03G0019 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.2e-30 137.9 95 73.7
Cpa.g.sc96.27 Carica papaya HOM05D006960 ORTHO05D008699 6.1e-24 115.5 150 48.0
Cfa022703 Carpinus fangiana HOM05D006960 ORTHO05D008699 7.0e-20 102.1 162 41.4
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 3.5e-19 99.8 130 40.0
TAR636G2744 Trochodendron aralioides HOM05D006960 ORTHO05D008699 1.1e-17 94.7 93 53.8
PRCOL_00000953 Prasinoderma coloniale HOM05D006960 ORTHO05D008699 6.2e-16 89.0 220 33.2
CiPaw.01G076800 Carya illinoinensis HOM05D006960 ORTHO05D008699 9.5e-09 65.1 127 37.0
Medtr5g015730 Medicago truncatula HOM05D006960 ORTHO05D008699 3.1e-07 60.1 40 70.0


User provided reference genes

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