Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g00860 Schrenkiella parvula HOM05D005178 ORTHO05D006123 1.0e-132 476.9 263 100.0
Carub.0001s0080 Capsella rubella HOM05D005178 ORTHO05D006123 2.0e-104 382.9 272 82.0
Thhalv10009686m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 7.7e-104 380.9 265 83.0
BcaB03g13583 Brassica carinata HOM05D005178 ORTHO05D006123 2.2e-103 379.4 273 79.5
C05p00550 Brassica napus HOM05D005178 ORTHO05D006123 1.4e-102 376.7 273 79.1
AL1G10980 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 4.2e-102 375.2 268 76.9
A10p00520 Brassica napus HOM05D005178 ORTHO05D006123 3.6e-101 372.1 270 78.9
CARHR000970 Cardamine hirsuta HOM05D005178 ORTHO05D006123 4.6e-101 371.7 268 74.6
AT1G01453 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 1.4e-100 370.2 272 79.8
BolC5t28844H Brassica oleracea HOM05D005178 ORTHO05D006123 2.3e-100 369.4 267 78.7
BraA10t42331Z Brassica rapa HOM05D005178 ORTHO05D006123 3.0e-100 369.0 270 79.3
Thhalv10028895m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 1.0e-84 317.4 252 70.6
CARHR249180 Cardamine hirsuta HOM05D005178 ORTHO05D006123 1.7e-82 310.1 253 68.8
AT4G01110 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 8.5e-79 297.7 255 67.5
AL6G52250 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 2.5e-78 296.2 253 68.0
Carub.0006s3617 Capsella rubella HOM05D005178 ORTHO05D006123 4.2e-78 295.4 257 68.1
BraA02t07418Z Brassica rapa HOM05D005178 ORTHO05D006123 1.2e-77 293.9 268 63.8
Aa31LG5G850 Aethionema arabicum HOM05D005178 ORTHO05D006123 1.0e-76 290.8 271 57.6
C02p38280 Brassica napus HOM05D005178 ORTHO05D006123 2.3e-76 289.7 269 63.2
BolC3t16162H Brassica oleracea HOM05D005178 ORTHO05D006123 3.4e-75 285.8 243 66.7
C03p38880 Brassica napus HOM05D005178 ORTHO05D006123 1.3e-74 283.9 243 65.0
BolC2t09843H Brassica oleracea HOM05D005178 ORTHO05D006123 2.2e-74 283.1 269 62.1
Aa31LG1G10830 Aethionema arabicum HOM05D005178 ORTHO05D006123 3.7e-74 282.3 259 63.3
BcaC01g06846 Brassica carinata HOM05D005178 ORTHO05D006123 3.7e-74 282.3 249 65.9
A03p31890 Brassica napus HOM05D005178 ORTHO05D006123 4.8e-74 282.0 266 63.5
THA.LOC104825868 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 4.8e-74 282.0 268 64.2
BcaC03g16062 Brassica carinata HOM05D005178 ORTHO05D006123 6.3e-74 281.6 248 64.1
BcaB01g02336 Brassica carinata HOM05D005178 ORTHO05D006123 4.1e-73 278.9 250 64.8
Sp6g01000 Schrenkiella parvula HOM05D005178 ORTHO05D006123 2.3e-71 273.1 253 62.8
A02p24280 Brassica napus HOM05D005178 ORTHO05D006123 9.2e-65 251.1 173 68.8
BraA03t12361Z Brassica rapa HOM05D005178 ORTHO05D006123 7.8e-64 248.1 243 61.3
Gohir.D12G113800 Gossypium hirsutum HOM05D005178 ORTHO05D006123 2.4e-36 156.8 243 39.1
Gorai.008G123300 Gossypium raimondii HOM05D005178 ORTHO05D006123 5.2e-36 155.6 242 38.8
BcaC02g12521 Brassica carinata HOM05D005178 ORTHO05D006123 3.4e-35 152.9 257 42.4
A05p01500 Brassica napus HOM05D005178 ORTHO05D006123 7.6e-35 151.8 253 42.7
BraA05t19146Z Brassica rapa HOM05D005178 ORTHO05D006123 7.6e-35 151.8 253 42.7
C03p30470 Brassica napus HOM05D005178 ORTHO05D006123 2.2e-34 150.2 250 42.0
C04p01700 Brassica napus HOM05D005178 ORTHO05D006123 2.2e-34 150.2 253 42.7
BolC3t15395H Brassica oleracea HOM05D005178 ORTHO05D006123 2.2e-34 150.2 250 42.0
BolC4t21822H Brassica oleracea HOM05D005178 ORTHO05D006123 2.2e-34 150.2 253 42.7
AL4G45600 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 4.9e-34 149.1 249 37.3
BcaC01g05079 Brassica carinata HOM05D005178 ORTHO05D006123 1.1e-33 147.9 257 42.8
Gohir.A11G094200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 1.1e-33 147.9 245 43.3
Gohir.D11G099200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 1.4e-33 147.5 245 42.9
Aa31LG1G27670 Aethionema arabicum HOM05D005178 ORTHO05D006123 3.2e-33 146.4 237 35.9
Gorai.007G105400 Gossypium raimondii HOM05D005178 ORTHO05D006123 1.6e-32 144.1 245 42.4
AT2G46300 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 1.3e-31 141.0 254 37.0
Thhalv10001596m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 1.3e-31 141.0 252 35.7
CANSAT56G4005 Cannabis sativa HOM05D005178 ORTHO05D006123 5.1e-31 139.0 247 42.1
Nn7g37376 Nelumbo nucifera HOM05D005178 ORTHO05D006123 6.6e-31 138.7 253 37.9
BcaB01g03231 Brassica carinata HOM05D005178 ORTHO05D006123 1.1e-30 137.9 254 40.6
BcaC01g05085 Brassica carinata HOM05D005178 ORTHO05D006123 1.1e-30 137.9 254 40.6
Thecc.01G348100 Theobroma cacao HOM05D005178 ORTHO05D006123 2.5e-30 136.7 247 41.7
THA.LOC104802056 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 3.3e-30 136.3 247 41.3
Sp4g28340 Schrenkiella parvula HOM05D005178 ORTHO05D006123 1.2e-29 134.4 177 40.1
Potri.014G094400 Populus trichocarpa HOM05D005178 ORTHO05D006123 1.6e-29 134.0 245 39.6
A03p25540 Brassica napus HOM05D005178 ORTHO05D006123 4.7e-29 132.5 249 40.2
BraA03t11771Z Brassica rapa HOM05D005178 ORTHO05D006123 4.7e-29 132.5 249 40.2
CARHR141580 Cardamine hirsuta HOM05D005178 ORTHO05D006123 4.7e-29 132.5 177 39.0
Carub.0004s2900 Capsella rubella HOM05D005178 ORTHO05D006123 8.1e-29 131.7 255 32.9
PGR042G2135 Punica granatum HOM05D005178 ORTHO05D006123 9.0e-28 128.3 250 39.6
Haze_15614 Corylus avellana HOM05D005178 ORTHO05D006123 1.2e-27 127.9 243 42.8
CsaV3_3G008390 Cucumis sativus L. HOM05D000050 ORTHO05D000380 1.5e-27 127.5 249 39.8
Gohir.D08G147400 Gossypium hirsutum HOM05D005178 ORTHO05D006123 2.6e-27 126.7 241 34.0
Gohir.A08G126100 Gossypium hirsutum HOM05D005178 ORTHO05D006123 9.9e-27 124.8 243 36.2
Gorai.004G153000 Gossypium raimondii HOM05D005178 ORTHO05D006123 9.9e-27 124.8 241 34.0
MD07G1144100 Malus domestica HOM05D005178 ORTHO05D006123 9.9e-27 124.8 248 39.9
Ciclev10021837m.g Citrus clementina HOM05D005178 ORTHO05D006123 1.3e-26 124.4 245 44.1
RcHm_v2.0_Chr1g0358651 Rosa chinensis HOM05D005178 ORTHO05D006123 2.2e-26 123.6 249 39.8
Duzib133G0451 Durio zibethinus HOM05D005178 ORTHO05D006123 2.9e-26 123.2 248 39.9
THA.LOC104817334 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 3.8e-26 122.9 246 37.8
Duzib138G0021 Durio zibethinus HOM05D005178 ORTHO05D006123 4.9e-26 122.5 247 39.3
Manes.05G026400 Manihot esculenta HOM05D005178 ORTHO05D006123 4.9e-26 122.5 249 35.3
Potri.002G167300 Populus trichocarpa HOM05D005178 ORTHO05D006123 6.4e-26 122.1 244 38.1
FAN03G0560 Fragaria x ananassa HOM05D005178 ORTHO05D006123 1.1e-25 121.3 249 37.8
Nn1g01788 Nelumbo nucifera HOM05D005178 ORTHO05D006123 1.1e-25 121.3 251 34.3
FvH4_7g15840 Fragaria vesca HOM05D005178 ORTHO05D006123 4.2e-25 119.4 251 36.7
FAN06G0749 Fragaria x ananassa HOM05D005178 ORTHO05D006123 5.4e-25 119.0 251 36.7
Sabra02G0144400 Salix brachista HOM05D005178 ORTHO05D006123 5.4e-25 119.0 241 36.5
FAN10G2759 Fragaria x ananassa HOM05D005178 ORTHO05D006123 7.1e-25 118.6 249 36.5
QL04p059571 Quercus lobata HOM05D005178 ORTHO05D006123 7.1e-25 118.6 251 39.8
MELO3C006056.2 Cucumis melo HOM05D005178 ORTHO05D006123 9.3e-25 118.2 244 39.8
Atru.chr5.616 Acer truncatum HOM05D005178 ORTHO05D006123 2.1e-24 117.1 245 40.0
Sc01g0002990 Simmondsia chinensis HOM05D005178 ORTHO05D006123 1.3e-23 114.4 248 39.1
FAN06G4203 Fragaria x ananassa HOM05D005178 ORTHO05D006123 3.9e-23 112.8 247 36.0
MD01G1075000 Malus domestica HOM05D005178 ORTHO05D006123 1.5e-22 110.9 247 38.1
FAN10G1950 Fragaria x ananassa HOM05D005178 ORTHO05D006123 3.3e-22 109.8 248 35.9
TWI14G0215 Tripterygium wilfordii HOM05D005178 ORTHO05D006123 3.3e-22 109.8 141 42.6
Lj1g0025938 Lotus japonicus HOM05D005178 ORTHO05D006123 4.8e-21 105.9 253 32.8
Sed0008780 Sechium edule HOM05D005178 ORTHO05D006123 1.4e-20 104.4 239 36.0
CiPaw.01G071600 Carya illinoinensis HOM05D005178 ORTHO05D006123 3.1e-20 103.2 248 37.5
ClCG08G003840 Citrullus lanatus HOM05D005178 ORTHO05D006123 6.9e-20 102.1 253 36.8
Prupe.2G183000 Prunus persica HOM05D005178 ORTHO05D006123 1.2e-19 101.3 249 35.7
Sed0006216 Sechium edule HOM05D005178 ORTHO05D006123 1.2e-19 101.3 227 32.2
Dinv32550 Davidia involucrata HOM05D005178 ORTHO05D006123 2.6e-19 100.1 244 35.7
CiPaw.02G038200 Carya illinoinensis HOM05D005178 ORTHO05D006123 9.9e-19 98.2 242 33.9
VMungo0540G0638 Vigna mungo HOM05D005178 ORTHO05D006123 1.7e-18 97.4 267 34.5
HPP92_005223 Vanilla planifolia HOM05D005178 ORTHO05D006123 2.2e-18 97.1 254 29.1
SHI13195 Sapria himalayana HOM05D005178 ORTHO05D006123 3.8e-18 96.3 239 33.1
Rhsim07G0007300 Rhododendron simsii HOM05D005178 ORTHO05D006123 8.4e-18 95.1 250 38.0
SalBow5G4166 Salvia bowleyana HOM05D005178 ORTHO05D006123 1.1e-17 94.7 171 34.5
Ca_09491_v3 Cicer arietinum L. HOM05D005178 ORTHO05D006123 4.2e-17 92.8 239 34.7
Hma1.2p1_0384F.1_g141000 Hydrangea macrophylla HOM05D005178 ORTHO05D006123 1.2e-16 91.3 242 36.8
Sabra14G0069000 Salix brachista HOM05D005178 ORTHO05D006123 1.2e-16 91.3 145 33.8
Sed0019896 Sechium edule HOM05D005178 ORTHO05D006123 1.2e-16 91.3 256 37.1
Hma1.2p1_2972F.1_g331100 Hydrangea macrophylla HOM05D005178 ORTHO05D006123 1.6e-16 90.9 242 33.1
MBI06_g02230_MAGBIO Magnolia biondii HOM05D005178 ORTHO05D006123 2.1e-16 90.5 244 35.2
Aqoxy7G00174 Aquilegia oxysepala HOM05D005178 ORTHO05D006123 2.7e-16 90.1 259 32.0
Gohir.A12G110633 Gossypium hirsutum HOM05D005178 ORTHO05D006123 3.5e-16 89.7 139 38.1
CSS0038689 Camellia sinensis var. sinensis HOM05D005178 ORTHO05D006123 1.0e-15 88.2 245 37.6
CsaV3_6G003970 Cucumis sativus L. HOM05D005178 ORTHO05D006123 8.7e-15 85.1 180 33.3
BcaC01g05083 Brassica carinata HOM05D005178 ORTHO05D006123 5.6e-14 82.4 101 40.6
Dinv43890 Davidia involucrata HOM05D005178 ORTHO05D006123 5.6e-14 82.4 245 33.9
SGA_v2.0_scaffold11G05717 Striga asiatica HOM05D005178 ORTHO05D006123 5.6e-14 82.4 241 32.8
Medtr7g116930 Medicago truncatula HOM05D005178 ORTHO05D006123 1.3e-13 81.3 174 29.3
PGSC0003DMG400019400 Solanum tuberosum HOM05D005178 ORTHO05D006123 1.6e-13 80.9 243 33.7
CAN.G1651.2 Capsicum annuum HOM05D005178 ORTHO05D006123 2.8e-13 80.1 240 31.7
MELO3C029922.2 Cucumis melo HOM05D005178 ORTHO05D006123 2.8e-13 80.1 174 32.2
Nitab4.5_0000522g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 1.8e-12 77.4 221 29.9
Lj7A504T56 Lonicera japonica HOM05D005178 ORTHO05D006123 3.1e-12 76.6 244 32.0
TPR.G4707 Trifolium pratense HOM05D005178 ORTHO05D006123 3.1e-12 76.6 242 33.1
HPP92_026775 Vanilla planifolia HOM05D005178 ORTHO05D006123 1.5e-11 74.3 251 33.1
Actinidia10100 Actinidia chinensis HOM05D005178 ORTHO05D006123 9.9e-11 71.6 248 34.3
Glyma.19G252900 Glycine max HOM05D005178 ORTHO05D006123 1.7e-10 70.9 252 31.0
Lalb_Chr04g0261721 Lupinus albus HOM05D005178 ORTHO05D006123 1.7e-10 70.9 176 29.0
BcaC01g05087 Brassica carinata HOM05D001597 ORTHO05D001512 1.9e-09 67.4 172 31.4
THA.LOC104812217 Tarenaya hassleriana HOM05D002137 ORTHO05D002144 3.2e-09 66.6 156 26.9
Aa31LG7G2430 Aethionema arabicum HOM05D002137 ORTHO05D002144 5.5e-09 65.9 156 28.8
Thhalv10008522m.g Eutrema salsugineum HOM05D002137 ORTHO05D002144 5.5e-09 65.9 157 28.0
Glyma.03G255300 Glycine max HOM05D005178 ORTHO05D006123 7.1e-09 65.5 241 30.3
Lsat_1_v5_gn_3_24501 Lactuca sativa HOM05D002137 ORTHO05D002144 9.3e-09 65.1 210 28.1
CARHR018230 Cardamine hirsuta HOM05D002137 ORTHO05D002144 1.2e-08 64.7 158 28.5
TAR375G0073 Trochodendron aralioides HOM05D005178 ORTHO05D006123 1.6e-08 64.3 102 37.3
Migut.A00132 Erythranthe guttata HOM05D002137 ORTHO05D002144 2.1e-08 63.9 274 29.2
Oeu008679.1 Olea europaea HOM05D005178 ORTHO05D006123 2.7e-08 63.5 171 25.7
Sp4g13060 Schrenkiella parvula HOM05D008517 ORTHO05D010482 6.0e-08 62.4 125 35.2
Manes.02G211300 Manihot esculenta HOM05D008517 ORTHO05D010482 7.9e-08 62.0 165 27.9
vmacro13200 Vaccinium macrocarpon HOM05D005178 ORTHO05D006123 1.0e-07 61.6 199 35.2
TAR633G1539 Trochodendron aralioides HOM05D000050 ORTHO05D010482 1.3e-07 61.2 240 31.2
GSVIVG01016858001 Vitis vinifera HOM05D002137 ORTHO05D002144 2.3e-07 60.5 234 25.2
BcaC02g11142 Brassica carinata HOM05D008517 ORTHO05D010482 3.0e-07 60.1 124 35.5
C04p20010 Brassica napus HOM05D008517 ORTHO05D010482 3.0e-07 60.1 124 35.5
BolC4t23540H Brassica oleracea HOM05D008517 ORTHO05D010482 3.0e-07 60.1 124 35.5
BcaB06g28372 Brassica carinata HOM05D008517 ORTHO05D010482 5.1e-07 59.3 125 32.8
Cpa.g.sc2.275 Carica papaya HOM05D008517 ORTHO05D010482 5.1e-07 59.3 147 29.3
BcaB02g10328 Brassica carinata HOM05D008517 ORTHO05D010482 6.7e-07 58.9 124 35.5
A05p14960 Brassica napus HOM05D008517 ORTHO05D010482 8.7e-07 58.5 124 34.7
BraA05t20422Z Brassica rapa HOM05D008517 ORTHO05D010482 8.7e-07 58.5 124 34.7
Psat3g003480 Pisum sativum HOM05D005178 ORTHO05D006123 8.7e-07 58.5 134 27.6
SGA_v2.0_scaffold6G03187 Striga asiatica HOM05D002137 ORTHO05D002144 1.1e-06 58.2 247 32.4
BraA04t17851Z Brassica rapa HOM05D008517 ORTHO05D010482 1.5e-06 57.8 125 32.8
unitig_88.g27680 Utricularia gibba HOM05D002137 ORTHO05D002144 1.5e-06 57.8 260 25.4
A04p23240 Brassica napus HOM05D008517 ORTHO05D010482 1.9e-06 57.4 125 32.8
TAR383G0516 Trochodendron aralioides HOM05D002137 ORTHO05D002144 1.9e-06 57.4 205 25.4
BcaC02g08016 Brassica carinata HOM05D008517 ORTHO05D010482 3.3e-06 56.6 125 32.0
C04p59390 Brassica napus HOM05D008517 ORTHO05D010482 3.3e-06 56.6 125 32.0
BolC4t27447H Brassica oleracea HOM05D008517 ORTHO05D010482 3.3e-06 56.6 125 32.0
Thhalv10016822m.g Eutrema salsugineum HOM05D008517 ORTHO05D010482 3.3e-06 56.6 224 29.0
A06p13520 Brassica napus HOM05D002137 ORTHO05D002144 4.3e-06 56.2 156 26.3
BraA06t24504Z Brassica rapa HOM05D002137 ORTHO05D002144 4.3e-06 56.2 156 26.3
CARHR123960 Cardamine hirsuta HOM05D008517 ORTHO05D010482 4.3e-06 56.2 147 33.3
Hma1.2p1_0544F.1_g175840 Hydrangea macrophylla HOM05D002137 ORTHO05D002144 9.6e-06 55.1 157 25.5


User provided reference genes

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