Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g00570 Schrenkiella parvula HOM05D005367 ORTHO05D006328 1.2e-175 619.8 318 100.0
Thhalv10008538m.g Eutrema salsugineum HOM05D005367 ORTHO05D006328 1.3e-76 290.8 258 66.7
AL1G10610 Arabidopsis lyrata HOM05D005367 ORTHO05D006328 5.1e-70 268.9 245 67.8
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 1.3e-65 254.2 238 63.4
BolC8t52897H Brassica oleracea HOM05D000368 ORTHO05D000289 1.3e-65 254.2 238 63.4
BraA09t42260Z Brassica rapa HOM05D005367 ORTHO05D006328 2.5e-64 250.0 242 61.2
Carub.0001s0048 Capsella rubella HOM05D005367 ORTHO05D006328 4.8e-60 235.7 189 72.5
AT1G01730 Arabidopsis thaliana HOM05D005367 ORTHO05D006328 7.2e-56 221.9 245 58.8
THA.LOC104801446 Tarenaya hassleriana HOM05D005367 ORTHO05D006328 5.0e-41 172.6 182 52.2
CARHR000590 Cardamine hirsuta HOM05D005367 ORTHO05D006328 4.1e-35 152.9 120 70.8
Aa31LG1G11110 Aethionema arabicum HOM05D005367 ORTHO05D006328 9.5e-32 141.7 112 69.6
Cpa.g.sc18.245 Carica papaya HOM05D005367 ORTHO05D006328 7.5e-29 132.1 184 44.6
CSS0033809 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 1.3e-28 131.3 163 46.0
CSS0040093 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 1.3e-28 131.3 167 44.9
Oeu056369.1 Olea europaea HOM05D005367 ORTHO05D006328 2.8e-28 130.2 168 45.8
Atru.chr5.466 Acer truncatum HOM05D005367 ORTHO05D006328 6.3e-28 129.0 156 45.5
Dinv43805 Davidia involucrata HOM05D005367 ORTHO05D006328 1.1e-27 128.3 175 46.3
Manes.05G036200 Manihot esculenta HOM05D005367 ORTHO05D006328 1.1e-27 128.3 167 41.9
Duzib133G0249 Durio zibethinus HOM05D005367 ORTHO05D006328 5.4e-27 125.9 145 49.0
SalBow3G2019 Salvia bowleyana HOM05D005367 ORTHO05D006328 7.0e-27 125.6 152 47.4
TWI14G0016 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 7.0e-27 125.6 181 44.8
Lj9A582T87 Lonicera japonica HOM05D005367 ORTHO05D006328 1.2e-26 124.8 180 44.4
Nitab4.5_0001702g0150 Nicotiana tabacum HOM05D005367 ORTHO05D006328 1.6e-26 124.4 167 43.7
Cfa003939 Carpinus fangiana HOM05D005367 ORTHO05D006328 2.0e-26 124.0 223 38.6
Haze_15487 Corylus avellana HOM05D005367 ORTHO05D006328 2.0e-26 124.0 219 38.8
Actinidia20916 Actinidia chinensis HOM05D005367 ORTHO05D006328 2.7e-26 123.6 159 45.9
Ciclev10021865m.g Citrus clementina HOM05D005367 ORTHO05D006328 4.5e-26 122.9 241 37.8
Prupe.2G167900 Prunus persica HOM05D005367 ORTHO05D006328 4.5e-26 122.9 160 43.8
Gohir.A11G088100 Gossypium hirsutum HOM05D005367 ORTHO05D006328 5.9e-26 122.5 161 46.0
Gohir.D11G092400 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.0e-25 121.7 202 40.6
Gorai.007G098700 Gossypium raimondii HOM05D005367 ORTHO05D006328 1.3e-25 121.3 202 40.6
HanXRQChr16g0522831 Helianthus annuus HOM05D005367 ORTHO05D006328 1.3e-25 121.3 165 44.8
Hma1.2p1_0001F.1_g001380 Hydrangea macrophylla HOM05D005367 ORTHO05D006328 1.7e-25 120.9 186 44.1
CiPaw.02G029900 Carya illinoinensis HOM05D005367 ORTHO05D006328 2.3e-25 120.6 210 37.6
Thecc.01G360700 Theobroma cacao HOM05D005367 ORTHO05D006328 5.0e-25 119.4 167 44.3
Solyc05g049880.3 Solanum lycopersicum HOM05D005367 ORTHO05D006328 6.6e-25 119.0 185 42.2
Sopen05g028210 Solanum pennellii HOM05D005367 ORTHO05D006328 6.6e-25 119.0 185 42.2
GSVIVG01026893001 Vitis vinifera HOM05D005367 ORTHO05D006328 6.6e-25 119.0 150 44.0
Cc02_g37850 Coffea canephora HOM05D005367 ORTHO05D006328 1.1e-24 118.2 161 41.6
SGA_v2.0_scaffold11G05663 Striga asiatica HOM05D000368 ORTHO05D006328 1.1e-24 118.2 153 47.1
QL08p049031 Quercus lobata HOM05D005367 ORTHO05D006328 1.9e-24 117.5 163 40.5
vmacro13291 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 2.5e-24 117.1 157 42.7
MSTRG.20826 Avicennia marina HOM05D005367 ORTHO05D006328 3.3e-24 116.7 155 44.5
unitig_61.g26388 Utricularia gibba HOM05D005367 ORTHO05D006328 3.3e-24 116.7 150 43.3
Aa31LG1G11100 Aethionema arabicum HOM05D005367 ORTHO05D006328 5.6e-24 115.9 177 42.9
Lalb_Chr01g0011531 Lupinus albus HOM05D005367 ORTHO05D006328 5.6e-24 115.9 157 41.4
Migut.B01742 Erythranthe guttata HOM05D005367 ORTHO05D006328 7.3e-24 115.5 152 43.4
Eucgr.E00158 Eucalyptus grandis HOM05D005367 ORTHO05D006328 7.3e-24 115.5 161 44.1
ClCG06G003800 Citrullus lanatus HOM05D005367 ORTHO05D006328 9.5e-24 115.2 209 38.3
Lalb_Chr24g0401631 Lupinus albus HOM05D005367 ORTHO05D006328 9.5e-24 115.2 157 41.4
MD01G1057500 Malus domestica HOM05D005367 ORTHO05D006328 9.5e-24 115.2 200 37.5
Nitab4.5_0008050g0010 Nicotiana tabacum HOM05D005367 ORTHO05D006328 9.5e-24 115.2 174 42.0
PGR042G0868 Punica granatum HOM05D005367 ORTHO05D006328 9.5e-24 115.2 138 44.9
Gohir.D08G152300 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.6e-23 114.4 172 41.3
Eucgr.D02282 Eucalyptus grandis HOM05D005367 ORTHO05D006328 2.1e-23 114.0 174 37.4
PGSC0003DMG400021656 Solanum tuberosum HOM05D005367 ORTHO05D006328 2.1e-23 114.0 185 42.2
RcHm_v2.0_Chr1g0355051 Rosa chinensis HOM05D005367 ORTHO05D006328 2.8e-23 113.6 182 39.0
arahy.Tifrunner.gnm1.ann1.G5US7K Arachis hypogaea HOM05D005367 ORTHO05D006328 3.6e-23 113.2 158 41.1
Potri.014G082600 Populus trichocarpa HOM05D005367 ORTHO05D006328 4.7e-23 112.8 159 40.9
arahy.Tifrunner.gnm1.ann1.D8DQXR Arachis hypogaea HOM05D005367 ORTHO05D006328 8.0e-23 112.1 158 41.1
VMungo1383G2792 Vigna mungo HOM05D005367 ORTHO05D006328 8.0e-23 112.1 157 42.0
MELO3C021217.2 Cucumis melo HOM05D005367 ORTHO05D006328 1.0e-22 111.7 190 37.9
Gohir.A08G130800 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.8e-22 110.9 161 41.6
MD07G1139200 Malus domestica HOM05D005367 ORTHO05D006328 1.8e-22 110.9 181 38.7
CARHR000610 Cardamine hirsuta HOM05D005367 ORTHO05D006328 3.1e-22 110.2 121 61.2
COL.COLO4_12698 Corchorus olitorius HOM05D005367 ORTHO05D006328 3.1e-22 110.2 226 38.1
Glyma.18G231900 Glycine max HOM05D005367 ORTHO05D006328 3.1e-22 110.2 172 39.5
Gorai.004G158200 Gossypium raimondii HOM05D005367 ORTHO05D006328 3.1e-22 110.2 172 40.7
Manes.01G258500 Manihot esculenta HOM05D005367 ORTHO05D006328 8.9e-22 108.6 175 38.9
Peaxi162Scf00191g01425 Petunia axillaris HOM05D005367 ORTHO05D006328 1.5e-21 107.8 155 44.5
PGR031G3282 Punica granatum HOM05D005367 ORTHO05D006328 1.5e-21 107.8 167 37.1
CsaV3_6G000470 Cucumis sativus L. HOM05D005367 ORTHO05D006328 2.0e-21 107.5 191 39.3
Lj1g0004821 Lotus japonicus HOM05D005367 ORTHO05D006328 2.0e-21 107.5 181 38.1
CANSAT56G3377 Cannabis sativa HOM05D005367 ORTHO05D006328 3.4e-21 106.7 170 38.8
Ciclev10006075m.g Citrus clementina HOM05D005367 ORTHO05D006328 7.5e-21 105.5 152 39.5
TAR636G2389 Trochodendron aralioides HOM05D003133 ORTHO05D003642 7.5e-21 105.5 182 37.9
ECA234G3275 Erigeron canadensis HOM05D005367 ORTHO05D006328 9.8e-21 105.1 172 38.4
Lsat_1_v5_gn_4_36280 Lactuca sativa HOM05D005367 ORTHO05D006328 9.8e-21 105.1 178 37.6
Nn1g01501 Nelumbo nucifera HOM05D005367 ORTHO05D006328 9.8e-21 105.1 201 37.3
RcHm_v2.0_Chr1g0354801 Rosa chinensis HOM05D005367 ORTHO05D006328 1.3e-20 104.8 179 35.2
Ca_07909_v3 Cicer arietinum L. HOM05D005367 ORTHO05D006328 1.7e-20 104.4 168 38.7
FvH4_7g14150 Fragaria vesca HOM05D005367 ORTHO05D006328 1.7e-20 104.4 176 38.1
Sc01g0003360 Simmondsia chinensis HOM05D005367 ORTHO05D006328 1.7e-20 104.4 172 40.7
Potri.002G158500 Populus trichocarpa HOM05D005367 ORTHO05D006328 3.7e-20 103.2 155 39.4
FAN03G1221 Fragaria x ananassa HOM05D005367 ORTHO05D006328 4.9e-20 102.8 176 36.4
FAN10G0042 Fragaria x ananassa HOM05D005367 ORTHO05D006328 4.9e-20 102.8 176 36.4
Phvul.008G065800 Phaseolus vulgaris HOM05D005367 ORTHO05D006328 4.9e-20 102.8 156 37.8
Hund16930 Selenicereus undatus HOM05D005367 ORTHO05D006328 4.9e-20 102.8 233 35.6
FAN06G0563 Fragaria x ananassa HOM05D005367 ORTHO05D006328 6.4e-20 102.4 176 37.5
Duzib205G1257 Durio zibethinus HOM05D005367 ORTHO05D006328 1.4e-19 101.3 179 36.9
FAN01G2456 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.9e-19 100.9 176 35.8
Medtr7g077380 Medicago truncatula HOM05D005367 ORTHO05D006328 2.4e-19 100.5 175 38.3
Psat3g109400 Pisum sativum HOM05D005367 ORTHO05D006328 3.2e-19 100.1 137 43.8
TPR.G37815 Trifolium pratense HOM05D005367 ORTHO05D006328 3.2e-19 100.1 176 36.9
Sed0017642 Sechium edule HOM05D005367 ORTHO05D006328 5.4e-19 99.4 160 36.2
Manes.06G148200 Manihot esculenta HOM05D005367 ORTHO05D006328 2.7e-18 97.1 186 35.5
Atru.chr1.441 Acer truncatum HOM05D005367 ORTHO05D006328 3.5e-18 96.7 162 39.5
TWI59G0064 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 7.8e-18 95.5 176 38.6
RcHm_v2.0_Chr1g0377581 Rosa chinensis HOM05D005367 ORTHO05D006328 1.0e-17 95.1 155 38.1
EL10Ac1g00429 Beta vulgaris HOM05D005367 ORTHO05D006328 1.3e-17 94.7 153 40.5
TAR375G0799 Trochodendron aralioides HOM05D005367 ORTHO05D006328 3.9e-17 93.2 211 35.1
Atru.chr1.440 Acer truncatum HOM05D005367 ORTHO05D006328 6.6e-17 92.4 170 34.7
VMungo1383G2823 Vigna mungo HOM05D005367 ORTHO05D006328 6.6e-17 92.4 158 35.4
Nn6g33454 Nelumbo nucifera HOM05D005367 ORTHO05D006328 3.3e-16 90.1 190 33.7
FvH4_7g29600 Fragaria vesca HOM05D005367 ORTHO05D006328 4.3e-16 89.7 166 35.5
DCAR_010300 Daucus carota HOM05D005367 ORTHO05D006328 7.3e-16 89.0 155 37.4
Ah.05g180710 Amaranthus hybridus HOM05D005367 ORTHO05D006328 9.5e-16 88.6 214 34.1
MD01G1202200 Malus domestica HOM05D005367 ORTHO05D006328 9.5e-16 88.6 155 37.4
FAN10G3657 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.6e-15 87.8 157 35.7
COL.COLO4_14330 Corchorus olitorius HOM05D005367 ORTHO05D006328 2.8e-15 87.0 182 34.1
PSO478G0766 Papaver somniferum HOM05D005367 ORTHO05D006328 6.2e-15 85.9 229 34.1
FAN10G4254 Fragaria x ananassa HOM05D005367 ORTHO05D006328 8.0e-15 85.5 166 33.7
QL09p013904 Quercus lobata HOM05D005367 ORTHO05D006328 8.0e-15 85.5 211 33.2
PSO782G1827 Papaver somniferum HOM05D005367 ORTHO05D006328 6.8e-14 82.4 227 32.6
vmacro06668 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 8.9e-14 82.0 184 33.2
Aqoxy7G00339 Aquilegia oxysepala HOM05D005367 ORTHO05D006328 1.2e-13 81.6 147 36.7
AUR62004342 Chenopodium quinoa HOM05D005367 ORTHO05D006328 2.0e-13 80.9 136 39.0
FAN10G2377 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.4e-11 74.7 92 42.4
FAN28G3009 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.4e-11 74.7 92 42.4
FAN10G0871 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.6e-10 71.2 122 34.4
HPP92_027620 Vanilla planifolia HOM05D005367 ORTHO05D006328 6.0e-10 69.3 167 34.1
FAN10G3879 Fragaria x ananassa HOM05D005367 ORTHO05D006328 7.8e-10 68.9 111 36.9
HPP92_022052 Vanilla planifolia HOM05D005367 ORTHO05D006328 1.3e-09 68.2 167 33.5
FAN03G1577 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.7e-09 67.8 136 33.8
Actinidia34119 Actinidia chinensis HOM05D005367 ORTHO05D006328 2.3e-09 67.4 149 31.5
MBI17_g24635_MAGBIO Magnolia biondii HOM05D005367 ORTHO05D006328 2.3e-09 67.4 65 47.7
Rhsim03G0187100 Rhododendron simsii HOM05D005367 ORTHO05D006328 2.5e-08 63.9 216 28.2
Dinv35219 Davidia involucrata HOM05D005367 ORTHO05D006328 3.3e-08 63.5 87 37.9
Potri.015G145000 Populus trichocarpa HOM05D005367 ORTHO05D006328 5.6e-08 62.8 135 35.6
AUR62022543 Chenopodium quinoa HOM05D000713 ORTHO05D000547 4.7e-07 59.7 89 38.2
Sabra14G0059900 Salix brachista HOM05D005367 ORTHO05D006328 4.7e-07 59.7 214 26.6
Sabra02G0126000 Salix brachista HOM05D005367 ORTHO05D006328 1.8e-06 57.8 52 50.0


User provided reference genes

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