Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g00530 Schrenkiella parvula HOM05D006991 ORTHO05D009188 0.0e+00 1304.7 634 100.0
Thhalv10007047m.g Eutrema salsugineum HOM05D006991 ORTHO05D009188 0.0e+00 1172.9 632 90.2
AL1G10570 Arabidopsis lyrata HOM05D006991 ORTHO05D009188 0.0e+00 1163.3 630 90.2
BraA09t42261Z Brassica rapa HOM05D006991 ORTHO05D009188 0.0e+00 1160.2 630 89.5
BolC8t52898H Brassica oleracea HOM05D006991 ORTHO05D009188 0.0e+00 1158.3 631 88.7
AT1G01770 Arabidopsis thaliana HOM05D006991 ORTHO05D009188 0.0e+00 1146.7 630 89.2
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 0.0e+00 1140.2 630 87.8
Carub.0001s0044 Capsella rubella HOM05D006991 ORTHO05D009188 0.0e+00 1127.1 631 86.7
Aa31LG1G11140 Aethionema arabicum HOM05D006991 ORTHO05D009188 0.0e+00 1104.7 631 84.6
THA.LOC104801448 Tarenaya hassleriana HOM05D006991 ORTHO05D009188 1.3e-287 992.6 640 76.2
GSVIVG01026850001 Vitis vinifera HOM05D006991 ORTHO05D009188 7.7e-259 897.1 640 70.2
Potri.002G157400 Populus trichocarpa HOM05D006991 ORTHO05D009188 5.0e-258 894.4 645 69.1
Ciclev10019238m.g Citrus clementina HOM05D006991 ORTHO05D009188 6.5e-258 894.0 643 68.6
Lj3g0006815 Lotus japonicus HOM05D006991 ORTHO05D009188 6.5e-258 894.0 637 69.7
QL08p049512 Quercus lobata HOM05D006991 ORTHO05D009188 2.7e-256 888.6 641 68.5
FvH4_7g13830 Fragaria vesca HOM05D006991 ORTHO05D009188 3.6e-256 888.3 633 68.4
FAN03G2057 Fragaria x ananassa HOM05D006991 ORTHO05D009188 7.9e-256 887.1 633 68.1
Prupe.2G164100 Prunus persica HOM05D006991 ORTHO05D009188 1.0e-255 886.7 636 68.7
Haze_15467 Corylus avellana HOM05D006991 ORTHO05D009188 1.8e-255 885.9 640 68.1
TWI23G0867 Tripterygium wilfordii HOM05D006991 ORTHO05D009188 1.1e-254 883.2 640 68.1
Glyma.07G073500 Glycine max HOM05D006991 ORTHO05D009188 1.5e-254 882.9 639 68.7
MD01G1054400 Malus domestica HOM05D006991 ORTHO05D009188 7.4e-254 880.6 633 68.1
TPR.G4402 Trifolium pratense HOM05D006991 ORTHO05D009188 4.8e-253 877.9 635 68.5
RcHm_v2.0_Chr1g0354041 Rosa chinensis HOM05D006991 ORTHO05D009188 1.1e-252 876.7 637 67.5
FAN10G0464 Fragaria x ananassa HOM05D006991 ORTHO05D009188 3.5e-251 871.7 660 65.8
FAN06G2381 Fragaria x ananassa HOM05D006991 ORTHO05D009188 1.0e-250 870.2 671 64.7
Lalb_Chr04g0256761 Lupinus albus HOM05D006991 ORTHO05D009188 1.3e-250 869.8 641 67.9
Medtr8g031480 Medicago truncatula HOM05D006991 ORTHO05D009188 8.5e-250 867.1 641 67.9
CANSAT56G3382 Cannabis sativa HOM05D006991 ORTHO05D009188 1.1e-249 866.7 637 66.2
VMungo0331G1855 Vigna mungo HOM05D006991 ORTHO05D009188 4.7e-248 861.3 633 68.1
Duzib138G0243 Durio zibethinus HOM05D006991 ORTHO05D009188 2.3e-247 859.0 640 66.9
Nn6g33525 Nelumbo nucifera HOM05D006991 ORTHO05D009188 8.8e-247 857.1 643 64.5
FAN06G3007 Fragaria x ananassa HOM05D006991 ORTHO05D009188 9.7e-246 853.6 657 65.0
Thecc.01G363100 Theobroma cacao HOM05D006991 ORTHO05D009188 9.7e-246 853.6 634 67.2
FAN01G0340 Fragaria x ananassa HOM05D006991 ORTHO05D009188 1.3e-245 853.2 657 65.0
COL.COLO4_12678 Corchorus olitorius HOM05D006991 ORTHO05D009188 4.8e-245 851.3 640 66.4
Cfa003952 Carpinus fangiana HOM05D006991 ORTHO05D009188 1.4e-244 849.7 643 66.4
Dinv43786 Davidia involucrata HOM05D006991 ORTHO05D009188 3.5e-243 845.1 644 65.5
PSO063G6634 Papaver somniferum HOM05D006991 ORTHO05D009188 8.5e-242 840.5 640 65.9
Atru.chr5.484 Acer truncatum HOM05D006991 ORTHO05D009188 1.5e-241 839.7 605 68.3
Gohir.D07G148700 Gossypium hirsutum HOM05D006991 ORTHO05D009188 1.5e-241 839.7 636 66.8
PGR042G0621 Punica granatum HOM05D006991 ORTHO05D009188 1.9e-241 839.3 635 64.6
Aqoxy5G03423_Aqoxy5G03424 Aquilegia oxysepala HOM05D006991 ORTHO05D009188 9.4e-241 837.0 642 65.3
Gorai.001G170100 Gossypium raimondii HOM05D006991 ORTHO05D009188 3.6e-240 835.1 636 66.4
Sed0028010 Sechium edule HOM05D006991 ORTHO05D009188 1.8e-239 832.8 642 64.6
AUR62004323 Chenopodium quinoa HOM05D006991 ORTHO05D009188 2.3e-239 832.4 642 64.5
Ah.05g176510 Amaranthus hybridus HOM05D006991 ORTHO05D009188 6.7e-239 830.9 638 63.9
Lsat_1_v5_gn_7_5201 Lactuca sativa HOM05D006991 ORTHO05D009188 4.4e-238 828.2 642 64.3
Eucgr.E00177 Eucalyptus grandis HOM05D006991 ORTHO05D009188 3.1e-236 822.0 666 62.9
ClCG05G001680 Citrullus lanatus HOM05D006991 ORTHO05D009188 4.1e-236 821.6 637 64.1
CSS0011179 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 9.1e-236 820.5 631 63.7
HanXRQChr04g0121651 Helianthus annuus HOM05D006991 ORTHO05D009188 9.1e-236 820.5 636 64.2
Cpa.g.sc18.226 Carica papaya HOM05D006991 ORTHO05D009188 2.0e-235 819.3 652 64.3
DCAR_015941 Daucus carota HOM05D006991 ORTHO05D009188 3.5e-235 818.5 642 64.5
ATR0680G083 Amborella trichopoda HOM05D006991 ORTHO05D009188 1.7e-234 816.2 641 62.9
Migut.N01431 Erythranthe guttata HOM05D006991 ORTHO05D009188 2.2e-234 815.8 636 64.5
Hund27298 Selenicereus undatus HOM05D006991 ORTHO05D002850 3.8e-234 815.1 646 63.8
MSTRG.28216 Avicennia marina HOM05D006991 ORTHO05D009188 8.5e-234 813.9 640 63.8
Lj9A581T68 Lonicera japonica HOM05D006991 ORTHO05D009188 1.9e-233 812.8 642 62.9
Cc02_g37710 Coffea canephora HOM05D006991 ORTHO05D009188 7.2e-233 810.8 635 64.1
Gohir.A07G142900 Gossypium hirsutum HOM05D006991 ORTHO05D009188 1.0e-231 807.0 635 65.4
PGSC0003DMG400000156 Solanum tuberosum HOM05D006991 ORTHO05D009188 3.0e-231 805.4 634 63.1
MELO3C006127.2 Cucumis melo HOM05D006991 ORTHO05D009188 5.2e-231 804.7 643 62.7
Rhsim07G0017800 Rhododendron simsii HOM05D006991 ORTHO05D009188 6.8e-231 804.3 644 63.7
CAN.G78.50 Capsicum annuum HOM05D006991 ORTHO05D009188 2.6e-230 802.4 637 62.2
CsaV3_3G009060 Cucumis sativus L. HOM05D006991 ORTHO05D009188 1.3e-229 800.0 639 62.8
Nitab4.5_0009210g0040 Nicotiana tabacum HOM05D006991 ORTHO05D009188 2.2e-229 799.3 633 62.6
Nitab4.5_0002160g0070 Nicotiana tabacum HOM05D006991 ORTHO05D009188 3.7e-229 798.5 633 62.7
Sopen01g038120 Solanum pennellii HOM05D006991 ORTHO05D009188 2.4e-228 795.8 638 63.0
Peaxi162Scf00020g00011 Petunia axillaris HOM05D006991 ORTHO05D009188 1.6e-227 793.1 658 60.3
CSS0000914 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 2.7e-227 792.3 640 61.6
Sc26g0001000 Simmondsia chinensis HOM05D006991 ORTHO05D009188 2.7e-227 792.3 629 62.8
Hma1.2p1_0001F.1_g001590 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 5.9e-227 791.2 642 62.1
Os07g0457300 Oryza sativa ssp. japonica HOM05D006991 ORTHO05D009188 1.0e-226 790.4 650 61.4
SGA_v2.0_scaffold43G16441 Striga asiatica HOM05D006991 ORTHO05D009188 2.9e-226 788.9 634 62.6
CDE05G1529 Ceratophyllum demersum HOM05D006991 ORTHO05D009188 3.8e-226 788.5 640 60.3
Psat4g154080 Pisum sativum HOM05D006991 ORTHO05D009188 3.8e-226 788.5 577 67.2
ECA236G3544 Erigeron canadensis HOM05D006991 ORTHO05D009188 1.9e-225 786.2 635 62.2
Solyc01g094330.3 Solanum lycopersicum HOM05D006991 ORTHO05D009188 1.9e-225 786.2 663 61.4
SalBow5G3488 Salvia bowleyana HOM05D006991 ORTHO05D009188 3.6e-224 781.9 656 61.3
SalBow5G3803 Salvia bowleyana HOM05D006991 ORTHO05D009188 3.6e-224 781.9 656 61.3
HPP92_004979 Vanilla planifolia HOM05D006991 ORTHO05D009188 2.3e-223 779.2 634 60.9
vmacro13305 Vaccinium macrocarpon HOM05D006991 ORTHO05D009188 2.8e-221 772.3 685 59.0
Zm00001eb306550 Zea mays HOM05D006991 ORTHO05D009188 5.4e-220 768.1 656 60.2
CARHR000550 Cardamine hirsuta HOM05D006991 ORTHO05D009188 8.3e-213 744.2 434 83.4
EL10Ac1g00536 Beta vulgaris HOM05D006991 ORTHO05D009188 2.0e-206 723.0 637 58.4
arahy.Tifrunner.gnm1.ann1.NT7Z8Q Arachis hypogaea HOM05D006991 ORTHO05D009188 8.9e-199 697.6 636 56.8
CiPaw.02G028700 Carya illinoinensis HOM05D006991 ORTHO05D009188 2.2e-197 693.0 448 73.7
unitig_748.g7107 Utricularia gibba HOM05D006991 ORTHO05D009188 1.6e-195 686.8 603 58.0
Actinidia10005 Actinidia chinensis HOM05D006991 ORTHO05D009188 2.0e-190 669.8 541 62.5
Hma1.2p1_0001F.1_g001600 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 1.3e-189 667.2 501 66.7
SMO164G0214 Selaginella moellendorffii HOM05D006991 ORTHO05D009188 3.9e-186 655.6 621 54.4
Pp3c9_2540 Physcomitrium patens HOM05D006991 ORTHO05D009188 8.7e-186 654.4 624 53.8
arahy.Tifrunner.gnm1.ann1.JH251T Arachis hypogaea HOM05D006991 ORTHO05D009188 3.4e-174 615.9 635 51.3
Ca_23659_v3 Cicer arietinum L. HOM05D006991 ORTHO05D009188 1.4e-167 594.0 604 52.6
MBI18_g09765_MAGBIO Magnolia biondii HOM05D006991 ORTHO05D009188 8.4e-157 558.1 505 58.0
Phvul.010G096000 Phaseolus vulgaris HOM05D006991 ORTHO05D009188 9.0e-151 538.1 351 72.1
Manes.01G259800 Manihot esculenta HOM05D006991 ORTHO05D009188 6.5e-141 505.4 328 73.8
TAR375G0043 Trochodendron aralioides HOM05D006991 ORTHO05D009188 2.2e-136 490.3 326 70.9
AagrBONN_evm.TU.Sc2ySwM_344.4948 Anthoceros agrestis HOM05D006991 ORTHO05D009188 5.2e-130 469.2 466 52.4
RcHm_v2.0_Chr1g0354021 Rosa chinensis HOM05D006991 ORTHO05D009188 5.2e-106 389.4 416 51.4
EL10Ac1g02136 Beta vulgaris HOM05D006991 ORTHO05D009188 2.4e-74 284.3 267 54.7
Sabra02G0125100 Salix brachista HOM05D006991 ORTHO05D009188 1.2e-73 282.0 185 72.4
EL10Ac3g06779 Beta vulgaris HOM05D006991 ORTHO05D009188 7.6e-65 252.7 176 65.3
HanXRQChr01g0021681 Helianthus annuus HOM05D006991 ORTHO05D009188 2.1e-62 244.6 204 60.3
QL09p021383 Quercus lobata HOM05D006991 ORTHO05D009188 9.6e-52 209.1 146 67.1
EL10Ac5g11247 Beta vulgaris HOM05D006991 ORTHO05D009188 2.2e-48 198.0 190 52.6
Ca_23662_v3 Cicer arietinum L. HOM05D006991 ORTHO05D028457 9.3e-47 192.6 129 74.4
AUR62003727 Chenopodium quinoa HOM05D001417 ORTHO05D001496 2.7e-46 191.0 121 71.9
AUR62033321 Chenopodium quinoa HOM05D006991 ORTHO05D028457 6.9e-42 176.4 135 65.2
PSO782G3099 Papaver somniferum HOM05D006991 ORTHO05D028457 7.4e-36 156.4 177 50.8
HanXRQChr01g0025441 Helianthus annuus HOM05D006991 ORTHO05D009188 8.5e-32 142.9 73 87.7
HanXRQChr03g0092981 Helianthus annuus HOM05D006991 ORTHO05D226355 2.8e-27 127.9 114 56.1
CAN.G1527.6 Capsicum annuum HOM05D006991 ORTHO05D028457 1.2e-22 112.5 103 58.3
CAN.G226.8 Capsicum annuum HOM05D006991 ORTHO05D000001 4.7e-22 110.5 64 75.0
AUR62036784 Chenopodium quinoa HOM05D006991 ORTHO05D138340 2.2e-19 101.7 81 58.0


User provided reference genes

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