Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g00440 Schrenkiella parvula HOM05D007580 ORTHO05D009620 4.7e-77 291.2 156 100.0
Thhalv10009990m.g Eutrema salsugineum HOM05D007580 ORTHO05D009620 2.4e-57 225.7 156 80.8
BcaB03g13622 Brassica carinata HOM05D007580 ORTHO05D009620 1.3e-53 213.4 160 76.2
A10p00190 Brassica napus HOM05D007580 ORTHO05D009620 1.6e-53 213.0 159 76.7
BraA10t42299Z Brassica rapa HOM05D007580 ORTHO05D009620 1.6e-53 213.0 159 76.7
CARHR000490 Cardamine hirsuta HOM05D007580 ORTHO05D009620 4.8e-53 211.5 156 77.6
BolC5t28812H Brassica oleracea HOM05D007580 ORTHO05D009620 6.2e-53 211.1 160 75.6
AT1G01840 Arabidopsis thaliana HOM05D007580 ORTHO05D009620 5.3e-52 208.0 156 76.9
Carub.0001s0037 Capsella rubella HOM05D007580 ORTHO05D009620 1.8e-47 193.0 156 73.1
C05p00230 Brassica napus HOM05D007580 ORTHO05D009620 1.5e-46 189.9 158 70.3
AL1G10480 Arabidopsis lyrata HOM05D007580 ORTHO05D009620 2.8e-45 185.7 156 72.4
Aa31LG1G11200 Aethionema arabicum HOM05D007580 ORTHO05D009620 2.2e-29 132.9 158 55.1
Solyc01g091790.2 Solanum lycopersicum HOM05D007580 ORTHO05D009620 2.6e-27 125.9 163 47.9
Sopen01g037570 Solanum pennellii HOM05D007580 ORTHO05D009620 3.4e-27 125.6 160 48.1
THA.LOC104814091 Tarenaya hassleriana HOM05D007580 ORTHO05D009620 7.2e-25 117.9 157 51.0
PGSC0003DMG400017056 Solanum tuberosum HOM05D007580 ORTHO05D009620 1.0e-23 114.0 163 44.2
Medtr7g076270 Medicago truncatula HOM05D007580 ORTHO05D009620 3.9e-23 112.1 159 46.5
Sabra14G0055200 Salix brachista HOM05D007580 ORTHO05D009620 3.9e-23 112.1 166 46.4
COL.COLO4_12626 Corchorus olitorius HOM05D007580 ORTHO05D009620 1.7e-21 106.7 175 44.0
TWI14G1086 Tripterygium wilfordii HOM05D007580 ORTHO05D009620 2.8e-21 105.9 166 44.6
Potri.002G153000 Populus trichocarpa HOM05D007580 ORTHO05D009620 6.3e-21 104.8 168 45.2
Lalb_Chr01g0021151 Lupinus albus HOM05D007580 ORTHO05D009620 8.2e-21 104.4 165 43.6
Potri.014G077000 Populus trichocarpa HOM05D007580 ORTHO05D009620 8.2e-21 104.4 169 43.2
GSVIVG01027528001 Vitis vinifera HOM05D007580 ORTHO05D009620 8.2e-21 104.4 156 42.9
Haze_15227 Corylus avellana HOM05D007580 ORTHO05D009620 1.4e-20 103.6 170 43.5
Oeu024417.1 Olea europaea HOM05D007580 ORTHO05D009620 1.4e-20 103.6 166 39.8
FAN06G3292 Fragaria x ananassa HOM05D007580 ORTHO05D009620 3.1e-20 102.4 155 45.8
FAN06G5062 Fragaria x ananassa HOM05D007580 ORTHO05D009620 3.1e-20 102.4 155 45.8
Manes.05G040200 Manihot esculenta HOM05D007580 ORTHO05D009620 3.1e-20 102.4 152 43.4
FAN10G2444 Fragaria x ananassa HOM05D007580 ORTHO05D009620 4.1e-20 102.1 155 45.2
Prupe.2G154500 Prunus persica HOM05D007580 ORTHO05D009620 4.1e-20 102.1 161 46.0
TPR.G37829 Trifolium pratense HOM05D007580 ORTHO05D009620 4.1e-20 102.1 156 44.2
CANSAT56G4452 Cannabis sativa HOM05D007580 ORTHO05D009620 5.3e-20 101.7 156 45.5
Gohir.D08G150700 Gossypium hirsutum HOM05D007580 ORTHO05D009620 5.3e-20 101.7 171 45.0
QL08p050656 Quercus lobata HOM05D007580 ORTHO05D009620 5.3e-20 101.7 173 41.6
Duzib133G0099 Durio zibethinus HOM05D007580 ORTHO05D009620 7.0e-20 101.3 179 44.1
Sabra02G0121300 Salix brachista HOM05D007580 ORTHO05D009620 7.0e-20 101.3 162 46.3
Cfa004181 Carpinus fangiana HOM05D007580 ORTHO05D009620 9.1e-20 100.9 170 42.9
FAN03G2022 Fragaria x ananassa HOM05D007580 ORTHO05D009620 1.5e-19 100.1 156 45.5
Hma1.2p1_0398F.1_g143830 Hydrangea macrophylla HOM05D007580 ORTHO05D009620 1.5e-19 100.1 180 41.1
CSS0034624 Camellia sinensis var. sinensis HOM05D007580 ORTHO05D009620 2.0e-19 99.8 153 41.8
Migut.B01687 Erythranthe guttata HOM05D007580 ORTHO05D009620 4.5e-19 98.6 179 41.9
Thecc.01G368700 Theobroma cacao HOM05D007580 ORTHO05D009620 4.5e-19 98.6 179 43.0
Gohir.A08G129400 Gossypium hirsutum HOM05D007580 ORTHO05D009620 5.9e-19 98.2 179 43.0
Manes.01G262404 Manihot esculenta HOM05D007580 ORTHO05D009620 5.9e-19 98.2 158 43.0
RcHm_v2.0_Chr1g0352211 Rosa chinensis HOM05D007580 ORTHO05D009620 7.7e-19 97.8 160 44.4
Gorai.004G156400 Gossypium raimondii HOM05D007580 ORTHO05D009620 1.0e-18 97.4 171 44.4
Nitab4.5_0004550g0100 Nicotiana tabacum HOM05D007580 ORTHO05D009620 2.2e-18 96.3 180 38.3
VMungo1383G0280 Vigna mungo HOM05D007580 ORTHO05D009620 2.2e-18 96.3 159 41.5
Duzib138G0841 Durio zibethinus HOM05D007580 ORTHO05D009620 2.9e-18 95.9 175 41.7
Glyma.18G227800 Glycine max HOM05D007580 ORTHO05D009620 2.9e-18 95.9 158 41.8
MD07G1128600 Malus domestica HOM05D007580 ORTHO05D009620 2.9e-18 95.9 160 43.8
Ciclev10023708m.g Citrus clementina HOM05D007580 ORTHO05D009620 3.8e-18 95.5 162 40.7
DCAR_006906 Daucus carota HOM05D007580 ORTHO05D009620 1.9e-17 93.2 157 42.7
FAN01G0874 Fragaria x ananassa HOM05D007580 ORTHO05D009620 2.5e-17 92.8 156 42.9
Psat0s1132g0080 Pisum sativum HOM05D007580 ORTHO05D009620 2.5e-17 92.8 164 39.6
Actinidia33444 Actinidia chinensis HOM05D007580 ORTHO05D009620 5.5e-17 91.7 157 40.1
TAR375G0300 Trochodendron aralioides HOM05D007580 ORTHO05D009620 2.1e-16 89.7 161 37.9
Sed0005443 Sechium edule HOM05D007580 ORTHO05D009620 2.7e-16 89.4 157 44.6
Nn1g01349 Nelumbo nucifera HOM05D007580 ORTHO05D009620 6.1e-16 88.2 161 38.5
Aqoxy7G00453 Aquilegia oxysepala HOM05D007580 ORTHO05D009620 8.0e-16 87.8 159 37.7
Ca_07865_v3 Cicer arietinum L. HOM05D007580 ORTHO05D009620 2.3e-15 86.3 159 40.3
PGR031G3829 Punica granatum HOM05D007580 ORTHO05D009620 3.9e-15 85.5 172 34.9
TAR003G0002 Trochodendron aralioides HOM05D007580 ORTHO05D009620 3.9e-15 85.5 161 37.9
MELO3C022528.2 Cucumis melo HOM05D007580 ORTHO05D009620 5.2e-15 85.1 168 40.5
Peaxi162Scf00021g00055 Petunia axillaris HOM05D007580 ORTHO05D009620 5.2e-15 85.1 172 37.2
Lsat_1_v5_gn_7_8361 Lactuca sativa HOM05D007580 ORTHO05D009620 8.8e-15 84.3 159 37.1
TAR656G0002 Trochodendron aralioides HOM05D007580 ORTHO05D009620 1.1e-14 84.0 161 37.3
Cpa.g.sc18.198 Carica papaya HOM05D007580 ORTHO05D009620 1.5e-14 83.6 134 42.5
CsaV3_6G005830 Cucumis sativus L. HOM05D007580 ORTHO05D009620 7.4e-14 81.3 173 39.9
Lsat_1_v5_gn_7_8421 Lactuca sativa HOM05D007580 ORTHO05D009620 1.7e-13 80.1 156 37.2
ClCG06G000100 Citrullus lanatus HOM05D007580 ORTHO05D009620 2.2e-13 79.7 176 38.6
Nitab4.5_0010430g0050 Nicotiana tabacum HOM05D007580 ORTHO05D009620 2.8e-13 79.3 163 36.2
CiPaw.01G053500 Carya illinoinensis HOM05D007580 ORTHO05D009620 3.1e-12 75.9 141 39.7
PSO782G0900 Papaver somniferum HOM05D007580 ORTHO05D009620 4.1e-12 75.5 188 34.0
PSO782G1514 Papaver somniferum HOM05D007580 ORTHO05D009620 4.1e-12 75.5 189 34.4
ECA236G4638 Erigeron canadensis HOM05D007580 ORTHO05D009620 5.3e-12 75.1 160 36.9
Rhsim01G0155700 Rhododendron simsii HOM05D007580 ORTHO05D009620 9.1e-12 74.3 172 34.3
Lj1g0023268 Lotus japonicus HOM05D007580 ORTHO05D009620 1.2e-11 73.9 156 39.7
SalBow3G0911 Salvia bowleyana HOM05D007580 ORTHO05D009620 1.6e-11 73.6 162 37.0
Glyma.09G264200 Glycine max HOM05D007580 ORTHO05D009620 3.5e-11 72.4 112 47.3
PSO478G4117 Papaver somniferum HOM05D007580 ORTHO05D009620 7.7e-11 71.2 188 34.6
Sc23g0003300 Simmondsia chinensis HOM05D007580 ORTHO05D009620 2.9e-10 69.3 153 37.9
HanXRQChr04g0121781 Helianthus annuus HOM05D007580 ORTHO05D009620 3.8e-10 68.9 162 33.3
CiPaw.01G052900 Carya illinoinensis HOM05D007580 ORTHO05D009620 2.5e-09 66.2 141 38.3
Phvul.008G070400 Phaseolus vulgaris HOM05D007580 ORTHO05D009620 7.2e-09 64.7 140 37.1
vmacro20972 Vaccinium macrocarpon HOM05D007580 ORTHO05D009620 4.0e-07 58.9 75 46.7
Ah.05g176020 Amaranthus hybridus HOM05D007580 ORTHO05D009620 7.5e-06 54.7 152 32.9


User provided reference genes

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