Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g00170 Schrenkiella parvula HOM05D006055 ORTHO05D007480 3.2e-195 684.9 344 100.0
CARHR000230 Cardamine hirsuta HOM05D006055 ORTHO05D007480 1.7e-180 636.0 344 93.3
Thhalv10008126m.g Eutrema salsugineum HOM05D006055 ORTHO05D007480 7.3e-179 630.6 339 92.6
BcaC07g42437 Brassica carinata HOM05D006055 ORTHO05D007480 2.0e-176 622.5 340 92.6
Carub.0001s0012 Capsella rubella HOM05D006055 ORTHO05D007480 1.7e-175 619.4 339 92.0
AL1G10130 Arabidopsis lyrata HOM05D006055 ORTHO05D007480 3.7e-175 618.2 339 91.4
BcaC07g42339 Brassica carinata HOM05D006055 ORTHO05D007480 8.3e-175 617.1 339 92.0
AT1G02100 Arabidopsis thaliana HOM05D006055 ORTHO05D007480 3.2e-174 615.1 339 91.7
A09p69350 Brassica napus HOM05D006055 ORTHO05D007480 7.8e-165 583.9 361 84.8
BolC8t52925H Brassica oleracea HOM05D006055 ORTHO05D007480 7.8e-165 583.9 361 84.8
BraA09t42280Z Brassica rapa HOM05D006055 ORTHO05D007480 2.6e-160 568.9 362 83.7
Manes.05G054600 Manihot esculenta HOM05D006055 ORTHO05D007480 1.3e-151 540.0 326 80.4
COL.COLO4_12412 Corchorus olitorius HOM05D006055 ORTHO05D007480 3.2e-150 535.4 343 77.0
Gohir.A08G029400 Gossypium hirsutum HOM05D006055 ORTHO05D007480 9.3e-150 533.9 343 76.4
CANSAT21G1800 Cannabis sativa HOM05D006055 ORTHO05D007480 2.1e-149 532.7 326 78.5
QL04p030364 Quercus lobata HOM05D006055 ORTHO05D007480 2.1e-149 532.7 340 76.2
GSVIVG01018274001 Vitis vinifera HOM05D006055 ORTHO05D007480 4.6e-149 531.6 324 79.9
Duzib138G0472 Durio zibethinus HOM05D006055 ORTHO05D007480 2.3e-148 529.3 344 76.5
CANSAT21G1956 Cannabis sativa HOM05D006055 ORTHO05D007480 3.0e-148 528.9 323 78.6
TWI14G0600 Tripterygium wilfordii HOM05D006055 ORTHO05D007480 3.9e-148 528.5 339 77.3
Thecc.01G394500 Theobroma cacao HOM05D006055 ORTHO05D007480 8.7e-148 527.3 343 76.1
CSS0024076 Camellia sinensis var. sinensis HOM05D006055 ORTHO05D007480 1.5e-147 526.6 331 77.9
CiPaw.13G026500 Carya illinoinensis HOM05D006055 ORTHO05D007480 1.5e-147 526.6 340 75.9
Aa31LG1G11510 Aethionema arabicum HOM05D006055 ORTHO05D007480 2.5e-147 525.8 288 90.3
FvH4_7g10160 Fragaria vesca HOM05D006055 ORTHO05D007480 7.3e-147 524.2 344 75.0
Ciclev10021096m.g Citrus clementina HOM05D006055 ORTHO05D007480 2.1e-146 522.7 329 76.9
PGR004G2446 Punica granatum HOM05D006055 ORTHO05D007480 6.2e-146 521.2 344 76.7
MD07G1108400 Malus domestica HOM05D006055 ORTHO05D007480 2.4e-145 519.2 320 78.4
TAR375G0976 Trochodendron aralioides HOM05D006055 ORTHO05D007480 4.0e-145 518.5 344 75.0
Actinidia12146 Actinidia chinensis HOM05D006055 ORTHO05D007480 5.3e-145 518.1 326 77.9
Potri.014G047300 Populus trichocarpa HOM05D006055 ORTHO05D007480 5.3e-145 518.1 345 75.9
RcHm_v2.0_Chr1g0347871 Rosa chinensis HOM05D006055 ORTHO05D007480 6.9e-145 517.7 344 75.3
Eucgr.D01230 Eucalyptus grandis HOM05D006055 ORTHO05D007480 9.0e-145 517.3 330 76.4
FAN06G3912 Fragaria x ananassa HOM05D006055 ORTHO05D007480 9.0e-145 517.3 352 73.3
Hma1.2p1_0009F.1_g005960 Hydrangea macrophylla HOM05D006055 ORTHO05D007480 1.2e-144 516.9 344 73.5
Prupe.2G131200 Prunus persica HOM05D006055 ORTHO05D007480 1.2e-144 516.9 343 73.2
Nn1g00856 Nelumbo nucifera HOM05D006055 ORTHO05D007480 2.0e-144 516.2 343 74.1
PGR144G0002 Punica granatum HOM05D006055 ORTHO05D007480 2.0e-144 516.2 325 79.1
FAN01G2488 Fragaria x ananassa HOM05D006055 ORTHO05D007480 5.8e-144 514.6 352 72.7
Gorai.004G039000 Gossypium raimondii HOM05D006055 ORTHO05D007480 5.8e-144 514.6 385 68.1
Atru.chr5.130 Acer truncatum HOM05D006055 ORTHO05D007480 9.9e-144 513.8 318 79.6
Lj1g0005705 Lotus japonicus HOM05D006055 ORTHO05D007480 9.9e-144 513.8 331 75.8
FAN10G0847 Fragaria x ananassa HOM05D006055 ORTHO05D007480 2.2e-143 512.7 352 72.4
Cpa.g.sc101.4 Carica papaya HOM05D006055 ORTHO05D007480 2.9e-143 512.3 326 77.6
Gohir.D08G040100 Gossypium hirsutum HOM05D006055 ORTHO05D007480 4.9e-143 511.5 384 68.0
MSTRG.28152 Avicennia marina HOM05D006055 ORTHO05D007480 6.4e-143 511.1 329 77.5
MELO3C022277.2 Cucumis melo HOM05D006055 ORTHO05D007480 2.4e-142 509.2 329 75.7
Sed0027680 Sechium edule HOM05D006055 ORTHO05D007480 4.2e-142 508.4 326 77.3
Ca_08070_v3 Cicer arietinum L. HOM05D006055 ORTHO05D007480 7.1e-142 507.7 322 75.2
Nitab4.5_0000920g0150 Nicotiana tabacum HOM05D006055 ORTHO05D007480 7.1e-142 507.7 339 73.7
PSO063G7218 Papaver somniferum HOM05D006055 ORTHO05D007480 9.3e-142 507.3 336 74.1
Solyc01g090280.4 Solanum lycopersicum HOM05D006055 ORTHO05D007480 4.6e-141 505.0 340 72.6
Sopen01g036070 Solanum pennellii HOM05D006055 ORTHO05D007480 4.6e-141 505.0 340 72.6
Lalb_Chr13g0290591 Lupinus albus HOM05D006055 ORTHO05D007480 6.0e-141 504.6 326 75.8
PSO832G3098 Papaver somniferum HOM05D006055 ORTHO05D007480 6.0e-141 504.6 336 73.8
Psat0s3739g0040 Pisum sativum HOM05D006055 ORTHO05D007480 6.0e-141 504.6 317 76.0
SGA_v2.0_scaffold43G16538 Striga asiatica HOM05D006055 ORTHO05D007480 1.0e-140 503.8 330 76.1
Nitab4.5_0013736g0020 Nicotiana tabacum HOM05D006055 ORTHO05D007480 2.3e-140 502.7 340 72.9
CsaV3_6G008610 Cucumis sativus L. HOM05D006055 ORTHO05D007480 6.6e-140 501.1 329 74.8
Glyma.18G252000 Glycine max HOM05D006055 ORTHO05D007480 8.7e-140 500.7 325 75.1
Medtr7g081715 Medicago truncatula HOM05D006055 ORTHO05D007480 8.7e-140 500.7 329 74.5
Sabra14G0034300 Salix brachista HOM05D006055 ORTHO05D007480 8.7e-140 500.7 342 73.7
FAN10G2268 Fragaria x ananassa HOM05D006055 ORTHO05D007480 1.5e-139 500.0 375 68.0
arahy.Tifrunner.gnm1.ann1.JP1X2J Arachis hypogaea HOM05D006055 ORTHO05D007480 2.5e-139 499.2 343 72.6
ECA240G2571 Erigeron canadensis HOM05D006055 ORTHO05D007480 4.3e-139 498.4 344 73.0
arahy.Tifrunner.gnm1.ann1.C7FV9J Arachis hypogaea HOM05D006055 ORTHO05D007480 9.6e-139 497.3 343 72.3
CAN.G1473.12 Capsicum annuum HOM05D006055 ORTHO05D007480 9.6e-139 497.3 343 72.9
Rhsim07G0035700 Rhododendron simsii HOM05D006055 ORTHO05D007480 2.1e-138 496.1 338 74.3
TPR.G14105 Trifolium pratense HOM05D006055 ORTHO05D007480 1.4e-137 493.4 328 73.2
Glyma.13G187100 Glycine max HOM05D006055 ORTHO05D007480 3.1e-137 492.3 329 73.3
Peaxi162Scf00475g00522 Petunia axillaris HOM05D006055 ORTHO05D007480 3.1e-137 492.3 314 77.1
HanXRQChr13g0423211 Helianthus annuus HOM05D006055 ORTHO05D007480 4.0e-137 491.9 329 74.5
Dinv43619 Davidia involucrata HOM05D006055 ORTHO05D007480 2.6e-136 489.2 305 79.3
vmacro13494 Vaccinium macrocarpon HOM05D006055 ORTHO05D007480 4.5e-136 488.4 313 77.0
CSS0048269 Camellia sinensis var. sinensis HOM05D006055 ORTHO05D007480 9.9e-136 487.3 328 73.5
CDE06G0143 Ceratophyllum demersum HOM05D006055 ORTHO05D007480 1.6e-133 479.9 327 73.1
Migut.N01738 Erythranthe guttata HOM05D006055 ORTHO05D007480 6.7e-132 474.6 331 72.2
Cc02_g25090 Coffea canephora HOM05D006055 ORTHO05D007480 1.9e-131 473.0 307 77.2
Os06g0140100 Oryza sativa ssp. japonica HOM05D006055 ORTHO05D007480 2.5e-131 472.6 314 72.6
FAN03G3321 Fragaria x ananassa HOM05D006055 ORTHO05D007480 4.3e-131 471.9 347 68.6
FAN06G2084 Fragaria x ananassa HOM05D006055 ORTHO05D007480 1.4e-129 466.8 378 64.0
SGA_v2.0_scaffold116G32294 Striga asiatica HOM05D006055 ORTHO05D007480 2.2e-127 459.5 363 65.8
Aqoxy7G00862 Aquilegia oxysepala HOM05D006055 ORTHO05D007480 7.1e-126 454.5 306 73.9
Ah.16g103830 Amaranthus hybridus HOM05D006055 ORTHO05D007480 6.0e-125 451.4 335 67.5
Phvul.011G190400 Phaseolus vulgaris HOM05D006055 ORTHO05D007480 1.9e-123 446.4 331 68.9
Duzib133G1573 Durio zibethinus HOM05D006055 ORTHO05D007480 2.5e-123 446.0 305 74.1
Cfa011074 Carpinus fangiana HOM05D006055 ORTHO05D007480 9.6e-123 444.1 284 76.4
Oeu011253.1 Olea europaea HOM05D006055 ORTHO05D007480 9.6e-123 444.1 283 78.4
SalBow5G1596 Salvia bowleyana HOM05D006055 ORTHO05D007480 3.7e-122 442.2 382 62.3
Hund17088 Selenicereus undatus HOM05D006055 ORTHO05D007480 1.4e-121 440.3 323 69.0
Lsat_1_v5_gn_3_127241 Lactuca sativa HOM05D006055 ORTHO05D007480 2.4e-121 439.5 338 67.5
Sc02g0003100 Simmondsia chinensis HOM05D006055 ORTHO05D007480 5.0e-119 431.8 316 68.7
C08p54160 Brassica napus HOM05D006055 ORTHO05D007480 3.5e-117 425.6 262 84.7
Lj9C557T10 Lonicera japonica HOM05D006055 ORTHO05D007480 3.5e-117 425.6 345 66.1
AUR62013746 Chenopodium quinoa HOM05D006055 ORTHO05D007480 8.7e-116 421.0 290 73.4
SalBow5G4451 Salvia bowleyana HOM05D006055 ORTHO05D007480 8.7e-116 421.0 381 60.9
Hma1.2p1_0009F.1_g005970 Hydrangea macrophylla HOM05D006055 ORTHO05D007480 4.3e-115 418.7 267 74.2
MD02G1211800 Malus domestica HOM05D006055 ORTHO05D007480 1.7e-111 406.8 263 76.8
Glyma.09G242700 Glycine max HOM05D006055 ORTHO05D007480 4.2e-110 402.1 281 71.2
ATR0057G026 Amborella trichopoda HOM05D006055 ORTHO05D007480 4.6e-109 398.7 299 65.9
AUR62023405 Chenopodium quinoa HOM05D006055 ORTHO05D007480 4.6e-109 398.7 336 63.1
AagrBONN_evm.TU.Sc2ySwM_344.4855 Anthoceros agrestis HOM05D006055 ORTHO05D007480 5.1e-108 395.2 329 59.6
Zm00001eb270250 Zea mays HOM05D006055 ORTHO05D007480 4.3e-107 392.1 292 66.1
Mapoly0013s0063 Marchantia polymorpha HOM05D006055 ORTHO05D007480 6.3e-106 388.3 317 59.0
EL10Ac1g00759 Beta vulgaris HOM05D006055 ORTHO05D007480 1.1e-105 387.5 288 68.8
MBI04_g33722_MAGBIO Magnolia biondii HOM05D006055 ORTHO05D007480 1.6e-101 373.6 332 61.1
TWI14G1276 Tripterygium wilfordii HOM05D006055 ORTHO05D007480 1.6e-101 373.6 233 80.7
Pp3c6_20710 Physcomitrium patens HOM05D006055 ORTHO05D007480 2.7e-101 372.9 328 55.8
SMO169G0267 Selaginella moellendorffii HOM05D006055 ORTHO05D007480 7.9e-101 371.3 331 57.1
ClCG06G002510 Citrullus lanatus HOM05D006055 ORTHO05D007480 1.3e-95 354.0 288 65.6
unitig_578.g16712 Utricularia gibba HOM05D006055 ORTHO05D007480 1.5e-94 350.5 241 71.8
Haze_02842 Corylus avellana HOM05D006055 ORTHO05D007480 7.2e-94 348.2 276 65.9
CBR_g29813 Chara braunii HOM05D006055 ORTHO05D007480 1.3e-90 337.4 316 53.2
SEGI_37557 Sequoiadendron giganteum HOM05D006055 ORTHO05D007480 3.4e-83 312.8 233 65.2
CDE06G0088 Ceratophyllum demersum HOM05D006055 ORTHO05D007480 1.6e-80 303.9 223 69.1
ECA240G0951 Erigeron canadensis HOM05D006055 ORTHO05D007480 4.5e-72 275.8 224 65.6
Cre04.g229350 Chlamydomonas reinhardtii HOM05D006055 ORTHO05D007480 3.3e-70 269.6 364 41.5
VMungo1127G0075 Vigna mungo HOM05D006055 ORTHO05D007480 5.2e-52 209.1 150 73.3
Actinidia32500 Actinidia chinensis HOM05D006055 ORTHO05D007480 5.8e-51 205.7 187 60.4
MCO09G792 Micromonas commoda HOM05D006055 ORTHO05D007480 1.0e-47 194.9 327 37.0
Gohir.A09G116600 Gossypium hirsutum HOM05D006055 ORTHO05D007480 6.6e-47 192.2 143 67.1
HPP92_022088 Vanilla planifolia HOM05D006055 ORTHO05D007480 6.8e-44 182.2 129 66.7
SHI13615 Sapria himalayana HOM05D006055 ORTHO05D007480 8.4e-42 175.3 112 72.3
PRCOL_00000228 Prasinoderma coloniale HOM05D006055 ORTHO05D007480 7.3e-38 162.2 294 35.7
Gohir.D08G159633 Gossypium hirsutum HOM05D006055 ORTHO05D007480 8.7e-31 138.7 97 70.1
Zm00001eb438620 Zea mays HOM05D006055 ORTHO05D007480 2.4e-20 104.0 97 54.6
MD02G1212000 Malus domestica HOM05D006055 ORTHO05D007480 7.4e-14 82.4 39 87.2
SHI13613 Sapria himalayana HOM05D006055 ORTHO05D007480 2.1e-13 80.9 71 57.7
Phvul.008G046701 Phaseolus vulgaris HOM05D006055 ORTHO05D007480 3.1e-12 77.0 50 76.0


User provided reference genes

Program Settings