Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g034690 Solanum pennellii HOM05D006345 ORTHO05D007428 5.4e-133 477.6 234 100.0
PGSC0003DMG400023836 Solanum tuberosum HOM05D006345 ORTHO05D007428 2.6e-127 458.8 234 95.7
Nitab4.5_0008647g0020 Nicotiana tabacum HOM05D006345 ORTHO05D007428 3.4e-119 431.8 234 90.2
CAN.G575.62 Capsicum annuum HOM05D006345 ORTHO05D007428 9.8e-119 430.3 234 90.6
Peaxi162Scf00062g10131 Petunia axillaris HOM05D006345 ORTHO05D007428 2.5e-114 415.6 231 87.0
Nitab4.5_0001925g0110 Nicotiana tabacum HOM05D006345 ORTHO05D007428 3.3e-114 415.2 225 88.9
Solyc12g100070.3 Solanum lycopersicum HOM05D006345 ORTHO05D007428 3.2e-109 398.7 197 98.5
CSS0008102 Camellia sinensis var. sinensis HOM05D006345 ORTHO05D007428 1.0e-99 367.1 231 74.9
MSTRG.21400 Avicennia marina HOM05D006345 ORTHO05D007428 1.7e-99 366.3 222 78.4
Duzib212G0272 Durio zibethinus HOM05D006345 ORTHO05D007428 6.6e-99 364.4 224 77.7
CiPaw.01G263700 Carya illinoinensis HOM05D006345 ORTHO05D007428 1.9e-98 362.8 231 74.5
Lj3g0013440 Lotus japonicus HOM05D006345 ORTHO05D007428 1.9e-98 362.8 219 78.5
Lalb_Chr07g0189941 Lupinus albus HOM05D006345 ORTHO05D007428 4.3e-98 361.7 219 79.0
Migut.D00572 Erythranthe guttata HOM05D006345 ORTHO05D007428 7.3e-98 360.9 223 77.1
SalBow7G0027 Salvia bowleyana HOM05D006345 ORTHO05D007428 7.3e-98 360.9 222 78.8
Oeu012935.1 Olea europaea HOM05D006345 ORTHO05D007428 1.2e-97 360.1 221 77.8
Phvul.003G037201 Phaseolus vulgaris HOM05D006345 ORTHO05D007428 1.6e-97 359.8 216 80.6
Rhsim13G0136400 Rhododendron simsii HOM05D006345 ORTHO05D007428 1.6e-97 359.8 229 74.7
Prupe.4G121300 Prunus persica HOM05D006345 ORTHO05D007428 8.1e-97 357.5 224 75.9
Ca_19950_v3 Cicer arietinum L. HOM05D006345 ORTHO05D007428 1.1e-96 357.1 225 76.0
Gohir.A10G163600 Gossypium hirsutum HOM05D006345 ORTHO05D007428 1.1e-96 357.1 231 74.5
Medtr4g024860 Medicago truncatula HOM05D000001 ORTHO05D000003 1.1e-96 357.1 224 76.8
SalBow2G1193 Salvia bowleyana HOM05D006345 ORTHO05D007428 1.4e-96 356.7 229 74.7
Gorai.011G189500 Gossypium raimondii HOM05D006345 ORTHO05D007428 1.8e-96 356.3 231 74.5
Psat7g230920 Pisum sativum HOM05D006345 ORTHO05D007428 1.8e-96 356.3 220 77.3
TAR624G0710 Trochodendron aralioides HOM05D006345 ORTHO05D007428 2.3e-96 355.9 216 76.4
Cpa.g.sc12.137 Carica papaya HOM05D006345 ORTHO05D007428 8.9e-96 354.0 219 76.3
CsaV3_7G007230 Cucumis sativus L. HOM05D006345 ORTHO05D007428 8.9e-96 354.0 217 77.0
Glyma.03G027700 Glycine max HOM05D006345 ORTHO05D007428 8.9e-96 354.0 216 78.7
VMungo1383G2204 Vigna mungo HOM05D006345 ORTHO05D007428 8.9e-96 354.0 224 76.8
ClCG02G007550 Citrullus lanatus HOM05D006345 ORTHO05D007428 1.2e-95 353.6 217 77.4
Manes.16G061100 Manihot esculenta HOM05D006345 ORTHO05D007428 1.2e-95 353.6 221 75.6
Cc09_g04580 Coffea canephora HOM05D006345 ORTHO05D007428 2.6e-95 352.4 222 74.8
FvH4_3g13390 Fragaria vesca HOM05D006345 ORTHO05D007428 2.6e-95 352.4 225 74.7
FAN21G0075 Fragaria x ananassa HOM05D006345 ORTHO05D007428 2.6e-95 352.4 225 74.7
Nn3g17198 Nelumbo nucifera HOM05D006345 ORTHO05D007428 2.6e-95 352.4 216 76.4
QL08p052794 Quercus lobata HOM05D006345 ORTHO05D007428 3.4e-95 352.1 217 75.6
Dinv19690 Davidia involucrata HOM05D006345 ORTHO05D007428 4.4e-95 351.7 229 73.4
Sed0021159 Sechium edule HOM05D006345 ORTHO05D007428 5.8e-95 351.3 223 74.4
MELO3C018575.2 Cucumis melo HOM05D006345 ORTHO05D007428 9.9e-95 350.5 217 76.5
arahy.Tifrunner.gnm1.ann1.S1VR06 Arachis hypogaea HOM05D006345 ORTHO05D007428 1.3e-94 350.1 218 77.1
COL.COLO4_13882 Corchorus olitorius HOM05D006345 ORTHO05D007428 1.3e-94 350.1 220 75.9
FAN11G3812 Fragaria x ananassa HOM05D006345 ORTHO05D007428 1.7e-94 349.7 225 74.2
FAN25G2350 Fragaria x ananassa HOM05D006345 ORTHO05D007428 1.7e-94 349.7 225 74.2
Thecc.04G283900 Theobroma cacao HOM05D006345 ORTHO05D007428 1.7e-94 349.7 224 75.9
Sabra01G0052000 Salix brachista HOM05D006345 ORTHO05D007428 2.2e-94 349.4 220 76.8
Gohir.D10G170000 Gossypium hirsutum HOM05D006345 ORTHO05D007428 2.9e-94 349.0 231 72.3
arahy.Tifrunner.gnm1.ann1.P3RVZQ Arachis hypogaea HOM05D006345 ORTHO05D007428 3.8e-94 348.6 218 77.5
arahy.Tifrunner.gnm1.ann1.W97VC3 Arachis hypogaea HOM05D006345 ORTHO05D007428 3.8e-94 348.6 218 77.1
RcHm_v2.0_Chr5g0022101 Rosa chinensis HOM05D006345 ORTHO05D007428 4.9e-94 348.2 220 75.5
Sed0017834 Sechium edule HOM05D006345 ORTHO05D007428 4.9e-94 348.2 223 74.0
arahy.Tifrunner.gnm1.ann1.G9BQRV Arachis hypogaea HOM05D006345 ORTHO05D007428 6.4e-94 347.8 218 77.1
Oeu017184.1 Olea europaea HOM05D006345 ORTHO05D007428 6.4e-94 347.8 222 75.7
Glyma.01G139633 Glycine max HOM05D006345 ORTHO05D007428 8.4e-94 347.4 216 77.8
Lalb_Chr13g0291791 Lupinus albus HOM05D006345 ORTHO05D007428 8.4e-94 347.4 219 76.3
THA.LOC104822694 Tarenaya hassleriana HOM05D006345 ORTHO05D007428 8.4e-94 347.4 216 77.8
TPR.G7580 Trifolium pratense HOM05D006345 ORTHO05D007428 1.1e-93 347.1 219 76.7
Aqoxy7G02153 Aquilegia oxysepala HOM05D006345 ORTHO05D007428 1.9e-93 346.3 216 74.1
Potri.001G073700 Populus trichocarpa HOM05D006345 ORTHO05D007428 1.9e-93 346.3 231 73.6
Cc06_g02140 Coffea canephora HOM05D006345 ORTHO05D007428 2.4e-93 345.9 222 73.4
Sc05g0003040 Simmondsia chinensis HOM05D006345 ORTHO05D007428 3.2e-93 345.5 218 75.7
FAN16G3736 Fragaria x ananassa HOM05D006345 ORTHO05D007428 4.1e-93 345.1 225 73.8
MD05G1242200 Malus domestica HOM05D006345 ORTHO05D007428 4.1e-93 345.1 219 74.4
Ciclev10016345m.g Citrus clementina HOM05D006345 ORTHO05D007428 9.2e-93 344.0 224 72.8
CiPaw.14G048700 Carya illinoinensis HOM05D006345 ORTHO05D007428 1.6e-92 343.2 231 70.1
SGA_v2.0_scaffold8G04616 Striga asiatica HOM05D006345 ORTHO05D007428 3.5e-92 342.0 222 71.6
unitig_52.g17581 Utricularia gibba HOM05D006345 ORTHO05D007428 4.6e-92 341.7 223 72.6
CANSAT11G1250 Cannabis sativa HOM05D006345 ORTHO05D007428 3.0e-91 339.0 214 76.2
DCAR_001254 Daucus carota HOM05D006345 ORTHO05D007428 5.1e-91 338.2 222 71.6
MBI16_g30839_MAGBIO Magnolia biondii HOM05D006345 ORTHO05D007428 5.1e-91 338.2 221 71.0
TWI53G2073 Tripterygium wilfordii HOM05D006345 ORTHO05D007428 1.1e-90 337.0 224 71.0
Aqoxy3G02382 Aquilegia oxysepala HOM05D006345 ORTHO05D007428 5.6e-90 334.7 217 72.8
PGR042G3945 Punica granatum HOM05D006345 ORTHO05D007428 5.6e-90 334.7 216 72.7
Aa31LG8G650 Aethionema arabicum HOM05D006345 ORTHO05D007428 1.2e-89 333.6 216 72.7
ECA238G2485 Erigeron canadensis HOM05D006345 ORTHO05D007428 2.1e-89 332.8 222 69.4
HanXRQChr14g0447431 Helianthus annuus HOM05D006345 ORTHO05D007428 3.1e-88 328.9 222 69.4
PSO675G7514 Papaver somniferum HOM05D006345 ORTHO05D007428 6.9e-88 327.8 219 73.5
Ah.07g202050 Amaranthus hybridus HOM05D006345 ORTHO05D007428 8.9e-88 327.4 223 68.6
Carub.0003s1288 Capsella rubella HOM05D006345 ORTHO05D007428 2.6e-87 325.9 228 69.7
EL10Ac3g05939 Beta vulgaris HOM05D006345 ORTHO05D007428 4.4e-87 325.1 222 70.3
PSO782G3410 Papaver somniferum HOM05D006345 ORTHO05D007428 7.6e-87 324.3 219 73.1
Eucgr.F03783 Eucalyptus grandis HOM05D006345 ORTHO05D007428 9.9e-87 323.9 215 71.2
Carub.0006s3398 Capsella rubella HOM05D006345 ORTHO05D007428 2.2e-86 322.8 225 68.9
Ah.15g099610 Amaranthus hybridus HOM05D006345 ORTHO05D007428 3.8e-86 322.0 222 70.7
PSO541G0968 Papaver somniferum HOM05D006345 ORTHO05D007428 3.8e-86 322.0 223 71.3
CARHR088090 Cardamine hirsuta HOM05D006345 ORTHO05D007428 8.4e-86 320.9 216 72.7
AUR62015383 Chenopodium quinoa HOM05D006345 ORTHO05D007428 8.4e-86 320.9 222 70.3
AT3G13440 Arabidopsis thaliana HOM05D006345 ORTHO05D007428 1.9e-85 319.7 216 71.3
Lsat_1_v5_gn_3_103240 Lactuca sativa HOM05D006345 ORTHO05D007428 1.9e-85 319.7 218 69.7
Thhalv10021414m.g Eutrema salsugineum HOM05D006345 ORTHO05D007428 2.4e-85 319.3 216 71.3
AL3G25340 Arabidopsis lyrata HOM05D006345 ORTHO05D007428 5.4e-85 318.2 216 71.8
Sp3g11640 Schrenkiella parvula HOM05D006345 ORTHO05D007428 4.6e-84 315.1 216 71.3
BcaB04g21015 Brassica carinata HOM05D006345 ORTHO05D007428 1.3e-83 313.5 226 69.0
BcaC09g48312 Brassica carinata HOM05D006345 ORTHO05D007428 1.3e-83 313.5 216 70.4
C01p51620 Brassica napus HOM05D006345 ORTHO05D007428 1.3e-83 313.5 216 70.4
BolC1t05105H Brassica oleracea HOM05D006345 ORTHO05D007428 1.3e-83 313.5 216 70.4
A01p40130 Brassica napus HOM05D006345 ORTHO05D007428 1.1e-82 310.5 216 69.9
BraA01t04054Z Brassica rapa HOM05D006345 ORTHO05D007428 1.9e-82 309.7 216 69.4
CDE04G1044 Ceratophyllum demersum HOM05D006345 ORTHO05D007428 9.6e-82 307.4 211 67.3
SHI16738 Sapria himalayana HOM05D006345 ORTHO05D007428 9.6e-82 307.4 214 69.2
CDE06G0136 Ceratophyllum demersum HOM05D006345 ORTHO05D007428 1.3e-81 307.0 211 67.8
ATR0561G247 Amborella trichopoda HOM05D006345 ORTHO05D007428 1.6e-81 306.6 216 67.6
A05p36090 Brassica napus HOM05D002140 ORTHO05D007428 2.1e-81 306.2 213 69.0
BraA05t22416Z Brassica rapa HOM05D002140 ORTHO05D007428 2.1e-81 306.2 213 69.5
BcaC05g29179 Brassica carinata HOM05D002140 ORTHO05D007428 3.6e-81 305.4 212 68.9
C05p54470 Brassica napus HOM05D002140 ORTHO05D007428 3.6e-81 305.4 212 68.9
BolC5t34114H Brassica oleracea HOM05D002140 ORTHO05D007428 3.6e-81 305.4 212 68.9
HPP92_018755 Vanilla planifolia HOM05D006345 ORTHO05D007428 6.2e-81 304.7 213 65.7
Os03g0824200 Oryza sativa ssp. japonica HOM05D006345 ORTHO05D007428 2.9e-78 295.8 212 64.2
Pp3c9_17440 Physcomitrium patens HOM05D006345 ORTHO05D007428 3.8e-78 295.4 211 64.9
Mapoly0069s0066 Marchantia polymorpha HOM05D006345 ORTHO05D007428 1.9e-77 293.1 219 63.0
Zm00001eb211470 Zea mays HOM05D006345 ORTHO05D007428 4.2e-77 292.0 209 65.1
Lsat_1_v5_gn_2_63801 Lactuca sativa HOM05D006345 ORTHO05D007428 7.1e-77 291.2 221 63.3
SMO358G0200 Selaginella moellendorffii HOM05D006345 ORTHO05D007428 4.3e-74 282.0 208 64.4
CBR_g45447 Chara braunii HOM05D006345 ORTHO05D007428 1.6e-73 280.0 217 60.4
Thhalv10009961m.g Eutrema salsugineum HOM05D006345 ORTHO05D007428 2.8e-73 279.3 216 64.8
AagrBONN_evm.TU.Sc2ySwM_117.4015 Anthoceros agrestis HOM05D006345 ORTHO05D007428 2.0e-71 273.1 222 58.6
AUR62002307 Chenopodium quinoa HOM05D006345 ORTHO05D007428 7.6e-71 271.2 222 63.1
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 6.5e-62 241.5 185 61.6
SEGI_21458 Sequoiadendron giganteum HOM05D006345 ORTHO05D007428 1.2e-55 220.7 161 66.5
CAN.G1126.44 Capsicum annuum HOM05D006345 ORTHO05D007428 7.9e-52 208.0 178 62.4
CSS0000171 Camellia sinensis var. sinensis HOM05D006345 ORTHO05D007428 1.4e-43 180.6 113 76.1
Zm00001eb141630 Zea mays HOM05D006345 ORTHO05D007428 2.6e-42 176.4 144 59.7
Cre01.g036750 Chlamydomonas reinhardtii HOM05D006345 ORTHO05D007428 9.7e-42 174.5 213 44.6
Potri.003G157201 Populus trichocarpa HOM05D006345 ORTHO05D007428 4.7e-36 155.6 114 68.4
MCO02G297 Micromonas commoda HOM05D006345 ORTHO05D007428 3.9e-35 152.5 170 45.3
Sabra03G0114100 Salix brachista HOM05D000029 ORTHO05D000854 6.5e-30 135.2 193 42.0
Zm00001eb356470 Zea mays HOM05D006345 ORTHO05D007428 3.6e-28 129.4 98 60.2
ATR0006G036 Amborella trichopoda HOM05D006345 ORTHO05D007428 1.6e-12 77.4 49 67.3
Lj1P1152T38 Lonicera japonica HOM05D006345 ORTHO05D007428 8.8e-11 71.6 51 62.7
Os12g0612500 Oryza sativa ssp. japonica HOM05D006002 ORTHO05D007651 8.6e-06 55.1 145 29.7


User provided reference genes

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