Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g034670 Solanum pennellii HOM05D005867 ORTHO05D007273 3.5e-103 378.3 186 100.0
PGSC0003DMG400023838 Solanum tuberosum HOM05D005867 ORTHO05D007273 2.3e-102 375.6 186 98.9
Solyc12g100050.2 Solanum lycopersicum HOM05D005867 ORTHO05D007273 8.7e-102 373.6 186 98.4
CAN.G575.64 Capsicum annuum HOM05D005867 ORTHO05D007273 3.1e-99 365.2 186 95.2
Nitab4.5_0001925g0100 Nicotiana tabacum HOM05D005867 ORTHO05D007273 9.9e-98 360.1 187 95.2
Nitab4.5_0008647g0010 Nicotiana tabacum HOM05D005867 ORTHO05D007273 6.4e-97 357.5 187 94.1
Peaxi162Scf00029g00326 Petunia axillaris HOM05D005867 ORTHO05D007273 7.1e-96 354.0 185 91.9
Nitab4.5_0002766g0030 Nicotiana tabacum HOM05D005867 ORTHO05D007273 6.0e-95 350.9 186 90.9
Nitab4.5_0008868g0020 Nicotiana tabacum HOM05D005867 ORTHO05D007273 5.1e-94 347.8 186 90.9
Lsat_1_v5_gn_2_100781 Lactuca sativa HOM05D005867 ORTHO05D007273 3.3e-93 345.1 188 88.3
MSTRG.21396 Avicennia marina HOM05D005867 ORTHO05D007273 9.6e-93 343.6 186 88.7
RcHm_v2.0_Chr5g0077191 Rosa chinensis HOM05D005867 ORTHO05D007273 2.1e-92 342.4 186 86.6
PGSC0003DMG400013588 Solanum tuberosum HOM05D005867 ORTHO05D007273 2.1e-92 342.4 186 88.2
Solyc11g061760.3 Solanum lycopersicum HOM05D005867 ORTHO05D007273 2.8e-92 342.0 182 89.0
Sopen11g023660 Solanum pennellii HOM05D005867 ORTHO05D007273 2.8e-92 342.0 182 89.0
HanXRQChr02g0036871 Helianthus annuus HOM05D005867 ORTHO05D007273 3.6e-92 341.7 188 87.8
SalBow4G1382 Salvia bowleyana HOM05D005867 ORTHO05D007273 3.6e-92 341.7 186 87.6
DCAR_002056 Daucus carota HOM05D005867 ORTHO05D007273 6.2e-92 340.9 183 87.4
Actinidia16309 Actinidia chinensis HOM05D005867 ORTHO05D007273 8.1e-92 340.5 184 87.5
Oeu035742.1 Olea europaea HOM05D005867 ORTHO05D007273 8.1e-92 340.5 184 88.6
SalBow4G0034 Salvia bowleyana HOM05D005867 ORTHO05D007273 1.1e-91 340.1 186 87.1
Cc01_g01980 Coffea canephora HOM05D005867 ORTHO05D007273 4.0e-91 338.2 184 87.5
MSTRG.17581 Avicennia marina HOM05D005867 ORTHO05D007273 5.3e-91 337.8 186 87.6
ECA238G1591 Erigeron canadensis HOM05D005867 ORTHO05D007273 9.0e-91 337.0 188 85.6
SGA_v2.0_scaffold8G04610 Striga asiatica HOM05D005867 ORTHO05D007273 9.0e-91 337.0 186 86.0
Rhsim13G0224100 Rhododendron simsii HOM05D005867 ORTHO05D007273 1.5e-90 336.3 184 85.3
HanXRQChr14g0453051 Helianthus annuus HOM05D005867 ORTHO05D007273 2.6e-90 335.5 188 85.6
Sabra01G0013100 Salix brachista HOM05D005867 ORTHO05D007273 4.5e-90 334.7 184 84.8
Dinv36283 Davidia involucrata HOM05D005867 ORTHO05D007273 5.8e-90 334.3 184 85.9
Ciclev10016610m.g Citrus clementina HOM05D005867 ORTHO05D007273 2.2e-89 332.4 184 84.8
FvH4_3g43090 Fragaria vesca HOM05D005867 ORTHO05D007273 2.2e-89 332.4 186 83.3
FAN11G1123 Fragaria x ananassa HOM05D005867 ORTHO05D007273 2.2e-89 332.4 186 83.3
FAN25G0812 Fragaria x ananassa HOM05D005867 ORTHO05D007273 2.2e-89 332.4 186 83.3
Potri.001G018500 Populus trichocarpa HOM05D005867 ORTHO05D007273 2.2e-89 332.4 184 84.2
COL.COLO4_24845 Corchorus olitorius HOM05D005867 ORTHO05D007273 2.9e-89 332.0 184 83.2
Ah.04g161870 Amaranthus hybridus HOM05D005867 ORTHO05D007273 6.4e-89 330.9 184 83.2
Ah.06g193630 Amaranthus hybridus HOM05D005867 ORTHO05D007273 6.4e-89 330.9 184 83.2
CANSAT54G1708 Cannabis sativa HOM05D005867 ORTHO05D007273 6.4e-89 330.9 184 84.2
Migut.N02304 Erythranthe guttata HOM05D005867 ORTHO05D007273 6.4e-89 330.9 184 84.8
MD03G1024000 Malus domestica HOM05D005867 ORTHO05D007273 6.4e-89 330.9 184 83.2
MD11G1028900 Malus domestica HOM05D005867 ORTHO05D007273 8.4e-89 330.5 184 83.2
GSVIVG01025306001 Vitis vinifera HOM05D005867 ORTHO05D007273 8.4e-89 330.5 184 83.2
Eucgr.J00791 Eucalyptus grandis HOM05D005867 ORTHO05D007273 1.4e-88 329.7 184 83.7
Prupe.6G023200 Prunus persica HOM05D005867 ORTHO05D007273 1.4e-88 329.7 184 81.5
Oeu052048.1 Olea europaea HOM05D005867 ORTHO05D007273 3.2e-88 328.6 183 85.8
Migut.D00576 Erythranthe guttata HOM05D005867 ORTHO05D007273 4.2e-88 328.2 182 85.7
Manes.06G166900 Manihot esculenta HOM05D005867 ORTHO05D007273 4.2e-88 328.2 184 83.7
Cpa.g.sc84.80 Carica papaya HOM05D005867 ORTHO05D007273 5.4e-88 327.8 183 82.5
Cfa009733 Carpinus fangiana HOM05D005867 ORTHO05D007273 5.4e-88 327.8 184 83.7
FAN21G2433 Fragaria x ananassa HOM05D005867 ORTHO05D007273 5.4e-88 327.8 186 81.7
PGR119G1510 Punica granatum HOM05D005867 ORTHO05D007273 5.4e-88 327.8 184 82.6
CSS0048722 Camellia sinensis var. sinensis HOM05D005867 ORTHO05D007273 7.1e-88 327.4 182 84.6
AUR62000096 Chenopodium quinoa HOM05D005867 ORTHO05D007273 7.1e-88 327.4 184 82.1
AUR62019269 Chenopodium quinoa HOM05D005867 ORTHO05D007273 7.1e-88 327.4 184 82.1
Sc06g0004490 Simmondsia chinensis HOM05D005867 ORTHO05D007273 9.3e-88 327.0 184 84.2
THA.LOC104804975 Tarenaya hassleriana HOM05D005867 ORTHO05D007273 9.3e-88 327.0 184 82.1
FAN16G1279 Fragaria x ananassa HOM05D005867 ORTHO05D007273 1.2e-87 326.6 186 82.8
Gorai.009G072300 Gossypium raimondii HOM05D005867 ORTHO05D007273 1.6e-87 326.2 184 82.1
QL01p005337 Quercus lobata HOM05D005867 ORTHO05D007273 1.6e-87 326.2 184 82.6
EL10Ac4g10299 Beta vulgaris HOM05D005867 ORTHO05D007273 3.5e-87 325.1 184 82.1
Gohir.A05G068300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 3.5e-87 325.1 184 82.1
Atru.chr3.2589 Acer truncatum HOM05D005867 ORTHO05D007273 6.0e-87 324.3 184 82.1
SHI29727 Sapria himalayana HOM05D005867 ORTHO05D007273 6.0e-87 324.3 184 81.5
Thecc.09G227900 Theobroma cacao HOM05D005867 ORTHO05D007273 6.0e-87 324.3 184 81.0
Gohir.D05G071300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 7.9e-87 323.9 180 83.9
CiPaw.13G163600 Carya illinoinensis HOM05D005867 ORTHO05D007273 1.0e-86 323.6 184 84.8
Duzib168G0296 Durio zibethinus HOM05D005867 ORTHO05D007273 1.0e-86 323.6 184 82.1
VMungo1080G0295 Vigna mungo HOM05D005867 ORTHO05D007273 2.3e-86 322.4 184 81.5
TAR636G0304 Trochodendron aralioides HOM05D005867 ORTHO05D007273 3.0e-86 322.0 184 82.1
Aa31LG3G14590 Aethionema arabicum HOM05D005867 ORTHO05D007273 3.9e-86 321.6 183 80.9
TAR633G2552 Trochodendron aralioides HOM05D005867 ORTHO05D007273 3.9e-86 321.6 184 81.5
MELO3C015200.2 Cucumis melo HOM05D005867 ORTHO05D007273 5.1e-86 321.2 184 81.5
CsaV3_1G042730 Cucumis sativus L. HOM05D005867 ORTHO05D007273 6.7e-86 320.9 184 81.5
Dinv08036 Davidia involucrata HOM05D005867 ORTHO05D007273 6.7e-86 320.9 178 84.3
ClCG03G013300 Citrullus lanatus HOM05D005867 ORTHO05D007273 8.7e-86 320.5 184 81.5
AT5G13070 Arabidopsis thaliana HOM05D005867 ORTHO05D007273 1.5e-85 319.7 183 81.4
Sed0004394 Sechium edule HOM05D005867 ORTHO05D007273 1.5e-85 319.7 184 80.4
Phvul.L010243 Phaseolus vulgaris HOM05D005867 ORTHO05D007273 1.9e-85 319.3 184 81.0
Thhalv10014788m.g Eutrema salsugineum HOM05D005867 ORTHO05D007273 7.4e-85 317.4 183 80.3
Glyma.15G033100 Glycine max HOM05D005867 ORTHO05D007273 7.4e-85 317.4 184 80.4
Carub.0006s1124 Capsella rubella HOM05D005867 ORTHO05D007273 9.6e-85 317.0 183 80.3
AL6G23670 Arabidopsis lyrata HOM05D005867 ORTHO05D007273 1.3e-84 316.6 183 80.3
CARHR200400 Cardamine hirsuta HOM05D005867 ORTHO05D007273 1.3e-84 316.6 183 80.9
Sp6g30910 Schrenkiella parvula HOM05D005867 ORTHO05D007273 1.3e-84 316.6 183 79.8
TWI60G1455 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 2.1e-84 315.8 183 79.8
unitig_21.g20645 Utricularia gibba HOM05D005867 ORTHO05D007273 2.8e-84 315.5 186 77.4
BcaC04g19155 Brassica carinata HOM05D002203 ORTHO05D007273 3.7e-84 315.1 180 80.0
BraA10t44575Z Brassica rapa HOM05D005867 ORTHO05D007273 4.8e-84 314.7 180 80.6
A02p01670 Brassica napus HOM05D005867 ORTHO05D007273 6.2e-84 314.3 180 80.0
BolC2t06533H Brassica oleracea HOM05D005867 ORTHO05D007273 6.2e-84 314.3 180 80.0
BraA02t05146Z Brassica rapa HOM05D005867 ORTHO05D007273 6.2e-84 314.3 180 80.0
A10p25130 Brassica napus HOM05D005867 ORTHO05D007273 1.1e-83 313.5 180 80.0
Haze_23087 Corylus avellana HOM05D005867 ORTHO05D007273 1.1e-83 313.5 183 82.0
Nn2g15416 Nelumbo nucifera HOM05D005867 ORTHO05D007273 1.1e-83 313.5 184 80.4
BcaNung01858 Brassica carinata HOM05D005867 ORTHO05D007273 1.4e-83 313.2 180 79.4
C09p64030 Brassica napus HOM05D005867 ORTHO05D007273 1.4e-83 313.2 180 79.4
BolC9t59241H Brassica oleracea HOM05D005867 ORTHO05D007273 1.4e-83 313.2 180 79.4
C02p05880 Brassica napus HOM05D005867 ORTHO05D007273 1.8e-83 312.8 180 79.4
BcaNung01174 Brassica carinata HOM05D005867 ORTHO05D007273 2.4e-83 312.4 180 79.4
Aqoxy1G00241 Aquilegia oxysepala HOM05D005867 ORTHO05D007273 1.9e-80 302.8 184 77.2
TWI34G0922 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 1.9e-80 302.8 172 80.8
Lalb_Chr14g0372181 Lupinus albus HOM05D005867 ORTHO05D007273 2.4e-80 302.4 184 77.2
PSO384G4422 Papaver somniferum HOM05D005867 ORTHO05D007273 1.2e-79 300.1 185 76.8
PSO339G4569 Papaver somniferum HOM05D005867 ORTHO05D007273 3.5e-79 298.5 185 76.8
arahy.Tifrunner.gnm1.ann1.V9D8IR Arachis hypogaea HOM05D005867 ORTHO05D007273 4.6e-79 298.1 184 75.5
arahy.Tifrunner.gnm1.ann1.2D2P15 Arachis hypogaea HOM05D005867 ORTHO05D007273 1.0e-78 297.0 184 75.0
Duzib150G0087 Durio zibethinus HOM05D005867 ORTHO05D007273 2.5e-77 292.4 181 77.3
Cfa009734 Carpinus fangiana HOM05D005867 ORTHO05D007273 7.4e-77 290.8 184 73.9
Lj3g0003495 Lotus japonicus HOM05D005867 ORTHO05D007273 1.3e-76 290.0 184 76.1
Psat5g287440 Pisum sativum HOM05D005867 ORTHO05D007273 1.3e-76 290.0 186 75.8
TPR.G6870 Trifolium pratense HOM05D005867 ORTHO05D007273 2.1e-76 289.3 184 75.0
Ca_01285_v3 Cicer arietinum L. HOM05D005867 ORTHO05D007273 1.2e-74 283.5 184 73.4
Medtr1g058050 Medicago truncatula HOM05D005867 ORTHO05D007273 1.5e-74 283.1 184 73.4
CiPaw.13G163500 Carya illinoinensis HOM05D005867 ORTHO05D007273 4.5e-74 281.6 180 71.7
Medtr2g098170 Medicago truncatula HOM05D005867 ORTHO05D007273 5.8e-74 281.2 184 72.8
Medtr2g017985 Medicago truncatula HOM05D005867 ORTHO05D007273 1.0e-73 280.4 184 71.7
Medtr8g096810 Medicago truncatula HOM05D005867 ORTHO05D007273 1.0e-73 280.4 184 72.3
QL01p005297 Quercus lobata HOM05D005867 ORTHO05D007273 1.3e-73 280.0 184 69.6
MBI17_g30524_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 2.3e-70 269.2 173 69.9
ATR0605G298 Amborella trichopoda HOM05D005867 ORTHO05D007273 9.4e-64 247.3 183 61.7
Mapoly0061s0125 Marchantia polymorpha HOM05D005867 ORTHO05D007273 1.5e-61 240.0 180 57.2
SMO147G0033 Selaginella moellendorffii HOM05D005867 ORTHO05D007273 5.0e-57 224.9 180 55.6
Pp3c14_26010 Physcomitrium patens HOM05D005867 ORTHO05D007273 2.0e-53 213.0 177 52.5
Pp3c1_37310 Physcomitrium patens HOM05D005867 ORTHO05D007273 1.7e-52 209.9 183 51.9
Os02g0717900 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 2.4e-51 206.1 190 49.5
CBR_g20418 Chara braunii HOM05D005867 ORTHO05D007273 7.7e-50 201.1 181 50.3
MBI01_g27622_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 1.0e-49 200.7 172 57.6
HPP92_022794 Vanilla planifolia HOM05D005867 ORTHO05D007273 9.7e-45 184.1 168 51.8
Os09g0486000 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 3.2e-40 169.1 180 47.2
Lj2P647T17 Lonicera japonica HOM05D005867 ORTHO05D007273 2.6e-37 159.5 89 85.4
Zm00001eb316590 Zea mays HOM05D005867 ORTHO05D007273 4.0e-30 135.6 196 39.3
Zm00001eb189280 Zea mays HOM05D005867 ORTHO05D007273 8.0e-23 111.3 88 59.1
Mapoly0008s0230 Marchantia polymorpha HOM05D005867 ORTHO05D254737 8.9e-22 107.8 154 36.4
Actinidia28459 Actinidia chinensis HOM05D005867 ORTHO05D055216 1.8e-19 100.1 54 85.2
Cfa022043 Carpinus fangiana HOM05D002321 ORTHO05D006940 1.1e-06 57.8 88 34.1


User provided reference genes

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