Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g034090 Solanum pennellii HOM05D005204 ORTHO05D006037 0.0e+00 1350.5 679 100.0
Solyc12g099420.2 Solanum lycopersicum HOM05D005204 ORTHO05D006037 0.0e+00 1329.3 679 98.4
PGSC0003DMG400004628 Solanum tuberosum HOM05D005204 ORTHO05D006037 0.0e+00 1245.3 693 91.9
CAN.G484.49 Capsicum annuum HOM05D005204 ORTHO05D006037 0.0e+00 1106.3 691 82.6
Peaxi162Scf00646g00324 Petunia axillaris HOM05D005204 ORTHO05D006037 6.2e-283 977.2 673 75.5
Nitab4.5_0003484g0040 Nicotiana tabacum HOM05D005204 ORTHO05D006037 5.5e-271 937.6 690 73.3
Nitab4.5_0000570g0320 Nicotiana tabacum HOM05D005204 ORTHO05D006037 2.0e-268 929.1 709 70.9
Nitab4.5_0003767g0030 Nicotiana tabacum HOM05D005204 ORTHO05D006037 4.0e-229 798.5 697 64.1
Peaxi162Scf00065g01219 Petunia axillaris HOM05D005204 ORTHO05D006037 7.8e-225 784.3 673 64.8
Nitab4.5_0000695g0090 Nicotiana tabacum HOM05D005204 ORTHO05D006037 1.3e-216 756.9 696 61.5
CSS0048761 Camellia sinensis var. sinensis HOM05D005204 ORTHO05D006037 2.0e-196 689.9 692 56.6
Oeu016254.2 Olea europaea HOM05D005204 ORTHO05D006037 2.1e-185 653.3 722 53.5
Rhsim02G0007000 Rhododendron simsii HOM05D005204 ORTHO05D006037 1.7e-184 650.2 693 54.8
COL.COLO4_13824 Corchorus olitorius HOM05D005204 ORTHO05D006037 5.1e-184 648.7 687 54.7
Oeu031982.1 Olea europaea HOM05D005204 ORTHO05D006037 2.5e-183 646.4 717 53.8
QL06p010355 Quercus lobata HOM05D005204 ORTHO05D006037 3.6e-182 642.5 699 54.8
Hma1.2p1_0078F.1_g040360 Hydrangea macrophylla HOM05D005204 ORTHO05D006037 6.9e-181 638.3 689 54.3
Thecc.04G288800 Theobroma cacao HOM05D005204 ORTHO05D006037 4.5e-180 635.6 692 54.3
Ciclev10004466m.g Citrus clementina HOM05D005204 ORTHO05D006037 1.1e-178 630.9 688 54.9
Atru.chr4.2898 Acer truncatum HOM05D005204 ORTHO05D006037 7.1e-178 628.2 685 53.3
CiPaw.02G079900 Carya illinoinensis HOM05D005204 ORTHO05D006037 7.9e-177 624.8 680 54.1
Prupe.1G123900 Prunus persica HOM05D005204 ORTHO05D006037 1.8e-176 623.6 701 52.9
vmacro15212 Vaccinium macrocarpon HOM05D005204 ORTHO05D006037 3.0e-176 622.9 711 53.6
MD16G1164600 Malus domestica HOM05D005204 ORTHO05D006037 8.7e-176 621.3 691 53.0
TAR633G1027 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.3e-174 617.5 690 54.3
Gohir.A02G050800 Gossypium hirsutum HOM05D005204 ORTHO05D006037 2.1e-174 616.7 707 53.2
Actinidia14280 Actinidia chinensis HOM05D005204 ORTHO05D006037 2.8e-174 616.3 634 56.2
Duzib052G0651 Durio zibethinus HOM05D005204 ORTHO05D006037 4.0e-173 612.5 679 53.5
SGA_v2.0_scaffold428G51532 Striga asiatica HOM05D005204 ORTHO05D006037 9.0e-173 611.3 682 54.3
Gohir.D02G055700 Gossypium hirsutum HOM05D005204 ORTHO05D006037 1.2e-172 610.9 706 53.0
SalBow5G0318 Salvia bowleyana HOM05D005204 ORTHO05D006037 4.5e-172 609.0 683 54.3
Gorai.005G061700 Gossypium raimondii HOM05D005204 ORTHO05D006037 8.4e-171 604.7 706 52.7
MSTRG.24802 Avicennia marina HOM05D005204 ORTHO05D006037 1.4e-170 604.0 675 53.3
Cfa015426 Carpinus fangiana HOM05D005204 ORTHO05D006037 2.5e-170 603.2 697 51.1
Migut.N00079 Erythranthe guttata HOM05D005204 ORTHO05D006037 5.5e-170 602.1 679 54.3
Manes.03G200100 Manihot esculenta HOM05D005204 ORTHO05D006037 9.3e-170 601.3 670 53.6
Potri.008G219100 Populus trichocarpa HOM05D005204 ORTHO05D006037 1.2e-169 600.9 680 52.1
TWI73G0558 Tripterygium wilfordii HOM05D005204 ORTHO05D006037 1.0e-168 597.8 703 52.5
Sabra08G0151500 Salix brachista HOM05D005204 ORTHO05D006037 3.0e-168 596.3 683 52.1
Nn1g01973 Nelumbo nucifera HOM05D005204 ORTHO05D006037 2.5e-167 593.2 687 51.8
Lalb_Chr20g0117381 Lupinus albus HOM05D005204 ORTHO05D006037 6.2e-166 588.6 667 51.3
Cc03_g01540 Coffea canephora HOM05D005204 ORTHO05D006037 3.1e-165 586.3 727 51.4
MD13G1164900 Malus domestica HOM05D005204 ORTHO05D006037 3.1e-165 586.3 690 52.0
arahy.Tifrunner.gnm1.ann1.02VXE5 Arachis hypogaea HOM05D005204 ORTHO05D006037 4.5e-164 582.4 689 52.1
Potri.010G010480 Populus trichocarpa HOM05D005204 ORTHO05D006037 7.6e-164 581.6 693 51.4
arahy.Tifrunner.gnm1.ann1.J2HRGN Arachis hypogaea HOM05D005204 ORTHO05D006037 2.2e-163 580.1 687 51.4
RcHm_v2.0_Chr4g0423341 Rosa chinensis HOM05D005204 ORTHO05D006037 3.8e-163 579.3 691 52.0
GSVIVG01035108001 Vitis vinifera HOM05D005204 ORTHO05D006037 1.4e-162 577.4 749 47.9
Sc13g0003240 Simmondsia chinensis HOM05D005204 ORTHO05D006037 2.7e-161 573.2 659 51.9
MBI18_g25094_MAGBIO Magnolia biondii HOM05D005204 ORTHO05D006037 4.6e-161 572.4 692 51.6
Cpa.g.sc50.164 Carica papaya HOM05D005204 ORTHO05D006037 3.9e-160 569.3 700 49.9
ECA246G1739 Erigeron canadensis HOM05D005204 ORTHO05D006037 1.1e-159 567.8 688 51.2
FAN12G0364 Fragaria x ananassa HOM05D005204 ORTHO05D006037 5.7e-159 565.5 691 50.8
EL10Ac3g06651 Beta vulgaris HOM05D005204 ORTHO05D006037 7.4e-159 565.1 706 51.0
FvH4_4g18640 Fragaria vesca HOM05D005204 ORTHO05D006037 7.4e-159 565.1 691 50.8
PGR004G0276 Punica granatum HOM05D005204 ORTHO05D006037 1.3e-158 564.3 670 50.9
FAN12G3005 Fragaria x ananassa HOM05D005204 ORTHO05D006037 1.8e-157 560.5 690 50.7
HanXRQChr06g0173751 Helianthus annuus HOM05D005204 ORTHO05D006037 5.3e-157 558.9 691 50.8
FAN07G2681 Fragaria x ananassa HOM05D005204 ORTHO05D006037 2.6e-156 556.6 687 50.8
Hund20528 Selenicereus undatus HOM05D005204 ORTHO05D006037 3.4e-156 556.2 682 50.9
Lalb_Chr18g0054391 Lupinus albus HOM05D005204 ORTHO05D006037 5.9e-156 555.4 655 50.4
FAN17G1530 Fragaria x ananassa HOM05D005204 ORTHO05D006037 1.7e-155 553.9 692 50.4
Ca_01912_v3 Cicer arietinum L. HOM05D005204 ORTHO05D006037 2.2e-155 553.5 680 49.9
Lsat_1_v5_gn_3_21680 Lactuca sativa HOM05D005204 ORTHO05D006037 2.2e-155 553.5 678 51.0
Sabra10G0006400 Salix brachista HOM05D005204 ORTHO05D006037 2.9e-155 553.1 694 49.7
Lj6g0026338 Lotus japonicus HOM05D005204 ORTHO05D006037 3.8e-155 552.7 691 50.1
Dinv29726 Davidia involucrata HOM05D005204 ORTHO05D006037 1.4e-154 550.8 577 55.6
Haze_01167 Corylus avellana HOM05D005204 ORTHO05D006037 1.9e-154 550.4 852 42.6
Psat1g155920 Pisum sativum HOM05D005204 ORTHO05D006037 2.7e-153 546.6 682 48.7
VMungo1309G0885 Vigna mungo HOM05D005204 ORTHO05D006037 3.6e-153 546.2 704 49.0
Glyma.09G042300 Glycine max HOM05D005204 ORTHO05D006037 4.6e-153 545.8 686 48.8
Glyma.15G150700 Glycine max HOM05D005204 ORTHO05D006037 6.7e-152 542.0 668 49.4
TPR.G28067 Trifolium pratense HOM05D005204 ORTHO05D006037 1.3e-150 537.7 629 51.5
Aqoxy5G00784 Aquilegia oxysepala HOM05D005204 ORTHO05D006037 2.8e-150 536.6 638 51.6
Medtr2g436080 Medicago truncatula HOM05D005204 ORTHO05D006037 9.1e-149 531.6 629 51.2
Lj6A680G91 Lonicera japonica HOM05D005204 ORTHO05D006037 5.9e-148 528.9 594 52.9
BcaB06g25769 Brassica carinata HOM05D005204 ORTHO05D006037 5.0e-147 525.8 672 49.7
AL3G29660 Arabidopsis lyrata HOM05D005204 ORTHO05D006037 6.5e-147 525.4 678 48.5
Sp3g15000 Schrenkiella parvula HOM05D005204 ORTHO05D006037 6.5e-147 525.4 680 48.7
Carub.0003s1646 Capsella rubella HOM05D005204 ORTHO05D006037 8.5e-147 525.0 684 48.5
THA.LOC104820287 Tarenaya hassleriana HOM05D005204 ORTHO05D006037 1.4e-146 524.2 684 48.1
AT3G16730 Arabidopsis thaliana HOM05D005204 ORTHO05D006037 4.2e-146 522.7 682 48.1
Eucgr.H03961 Eucalyptus grandis HOM05D005204 ORTHO05D006037 4.2e-146 522.7 712 47.3
Sed0015514 Sechium edule HOM05D005204 ORTHO05D006037 9.4e-146 521.5 673 48.1
A05p32870 Brassica napus HOM05D005204 ORTHO05D006037 1.1e-143 514.6 671 48.3
BcaC05g28856 Brassica carinata HOM05D005204 ORTHO05D006037 1.5e-143 514.2 673 48.6
Phvul.009G250500 Phaseolus vulgaris HOM05D005204 ORTHO05D006037 5.7e-143 512.3 718 46.9
BraA05t22110Z Brassica rapa HOM05D005204 ORTHO05D006037 7.4e-143 511.9 671 48.1
Thhalv10020220m.g Eutrema salsugineum HOM05D005204 ORTHO05D006037 2.4e-141 506.9 674 48.1
C05p49580 Brassica napus HOM05D005204 ORTHO05D006037 7.0e-141 505.4 673 47.8
BolC5t33716H Brassica oleracea HOM05D005204 ORTHO05D006037 7.0e-141 505.4 673 47.8
PSO832G0069 Papaver somniferum HOM05D005204 ORTHO05D006037 2.7e-137 493.4 716 45.1
AUR62015273 Chenopodium quinoa HOM05D005204 ORTHO05D006037 3.6e-137 493.0 681 48.3
PSO210G5425 Papaver somniferum HOM05D005204 ORTHO05D006037 1.8e-136 490.7 712 45.2
A01p37560 Brassica napus HOM05D005204 ORTHO05D006037 3.9e-136 489.6 665 48.1
BraA01t03817Z Brassica rapa HOM05D005204 ORTHO05D006037 2.6e-135 486.9 665 48.1
Aa31LG8G3820 Aethionema arabicum HOM05D005204 ORTHO05D006037 3.3e-135 486.5 671 47.5
DCAR_030505 Daucus carota HOM05D005204 ORTHO05D006037 5.7e-135 485.7 642 46.9
BolC1t04731H Brassica oleracea HOM05D005204 ORTHO05D006037 7.4e-135 485.3 666 47.9
Manes.03G198500 Manihot esculenta HOM05D005204 ORTHO05D006037 2.2e-134 483.8 654 47.4
C01p47610 Brassica napus HOM05D005204 ORTHO05D006037 4.8e-134 482.6 667 48.3
AUR62018070 Chenopodium quinoa HOM05D005204 ORTHO05D006037 4.8e-134 482.6 729 44.6
Ah.04g153660 Amaranthus hybridus HOM05D005204 ORTHO05D006037 1.4e-133 481.1 680 46.9
ClCG08G017750 Citrullus lanatus HOM05D005204 ORTHO05D006037 1.4e-133 481.1 615 47.0
MELO3C010685.2 Cucumis melo HOM05D005204 ORTHO05D006037 2.9e-131 473.4 587 48.9
ATR0693G386 Amborella trichopoda HOM05D005204 ORTHO05D006037 3.2e-130 469.9 672 43.9
BcaC09g48627 Brassica carinata HOM05D005204 ORTHO05D006037 7.2e-130 468.8 669 47.1
HPP92_012404 Vanilla planifolia HOM05D005204 ORTHO05D006037 6.8e-128 462.2 670 46.0
DCAR_023300 Daucus carota HOM05D005204 ORTHO05D006037 2.6e-127 460.3 618 46.3
CsaV3_7G000690 Cucumis sativus L. HOM05D005204 ORTHO05D006037 4.5e-124 449.5 665 43.3
Zm00001eb322750 Zea mays HOM05D005204 ORTHO05D006037 5.5e-122 442.6 673 44.4
CsaV3_2G024870 Cucumis sativus L. HOM05D005204 ORTHO05D006037 1.3e-118 431.4 605 45.8
SHI00244 Sapria himalayana HOM05D005204 ORTHO05D006037 1.7e-118 431.0 760 41.6
CDE05G2961 Ceratophyllum demersum HOM05D005204 ORTHO05D006037 3.4e-111 406.8 681 42.3
Nn3g19294 Nelumbo nucifera HOM05D005204 ORTHO05D006037 1.1e-106 391.7 622 42.3
Os07g0517300 Oryza sativa ssp. japonica HOM05D005204 ORTHO05D006037 2.1e-105 387.5 652 40.8
SEGI_08509 Sequoiadendron giganteum HOM05D005204 ORTHO05D006037 2.6e-95 354.0 698 38.0
TAR362G0889 Trochodendron aralioides HOM05D005204 ORTHO05D006037 2.8e-89 334.0 511 45.0
CARHR091990 Cardamine hirsuta HOM05D005204 ORTHO05D006037 8.1e-89 332.4 437 49.0
Mapoly0137s0008 Marchantia polymorpha HOM05D005204 ORTHO05D006037 5.1e-75 286.6 718 34.3
Zm00001eb106060 Zea mays HOM05D005204 ORTHO05D006037 1.5e-74 285.0 586 36.3
unitig_749.g14080 Utricularia gibba HOM05D005204 ORTHO05D006037 4.0e-72 276.9 651 33.8
SMO367G0335 Selaginella moellendorffii HOM05D005204 ORTHO05D006037 8.7e-67 259.2 655 33.3
Dinv44351 Davidia involucrata HOM05D005204 ORTHO05D006037 6.0e-60 236.5 675 33.2
CARHR091980 Cardamine hirsuta HOM05D005204 ORTHO05D006037 1.1e-50 205.7 229 52.0
TAR624G0487 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.3e-49 202.2 331 42.3
Actinidia13388 Actinidia chinensis HOM05D005204 ORTHO05D006037 2.8e-49 201.1 179 62.6
ATR0693G078 Amborella trichopoda HOM05D005204 ORTHO05D006037 7.4e-42 176.4 220 47.7
CBR_g38039 Chara braunii HOM05D005204 ORTHO05D006037 4.1e-40 170.6 705 28.1
TAR624G0737 Trochodendron aralioides HOM05D005204 ORTHO05D006037 5.9e-39 166.8 187 53.5
Dinv29725 Davidia involucrata HOM05D005204 ORTHO05D006037 3.0e-35 154.5 114 76.3
AagrBONN_evm.TU.Sc2ySwM_340.303 Anthoceros agrestis HOM05D005204 ORTHO05D006037 1.5e-34 152.1 504 31.0
PGR004G0772 Punica granatum HOM05D005204 ORTHO05D006037 7.7e-31 139.8 120 60.0
DCAR_031703 Daucus carota HOM05D005204 ORTHO05D006037 1.1e-24 119.4 105 56.2
PRCOL_00000998 Prasinoderma coloniale HOM05D005204 ORTHO05D006037 2.2e-22 111.7 662 24.8
Manes.17G118669 Manihot esculenta HOM05D005204 ORTHO05D006037 4.2e-21 107.5 142 45.8
Cre09.g408900 Chlamydomonas reinhardtii HOM05D005204 ORTHO05D006037 2.1e-12 78.6 80 51.2
Zm00001eb139240 Zea mays HOM05D001287 ORTHO05D006037 7.5e-10 70.1 59 57.6
CSS0012295 Camellia sinensis var. sinensis HOM05D005204 ORTHO05D006037 7.0e-08 63.5 91 46.2
TAR362G0435 Trochodendron aralioides HOM05D005204 ORTHO05D006037 9.1e-08 63.2 67 52.2
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 7.7e-07 60.1 65 46.2
ATR0296G001 Amborella trichopoda HOM05D005204 ORTHO05D006037 1.0e-06 59.7 71 49.3


User provided reference genes

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