Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 3.6e-191 671.4 338 100.0
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 4.5e-189 664.5 339 99.1
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 5.1e-185 651.0 335 97.3
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 2.5e-184 648.7 335 95.5
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 3.3e-184 648.3 339 95.9
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.1e-182 643.3 339 95.9
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 6.5e-180 634.0 333 95.2
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 6.5e-180 634.0 339 94.4
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 6.5e-180 634.0 339 94.4
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 1.4e-179 632.9 339 94.1
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 1.3e-177 626.3 339 93.5
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 8.7e-177 623.6 339 92.6
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 1.1e-176 623.2 339 93.2
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 1.1e-176 623.2 334 92.8
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 3.3e-176 621.7 333 92.5
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 3.3e-176 621.7 334 92.8
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 5.7e-176 620.9 339 90.9
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 7.4e-176 620.5 331 94.3
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 4.8e-175 617.8 333 92.5
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 6.3e-175 617.5 333 91.9
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 1.1e-174 616.7 340 90.6
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 1.1e-174 616.7 335 92.2
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 1.4e-174 616.3 339 92.0
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 1.4e-174 616.3 335 91.3
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 9.0e-174 613.6 339 90.6
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.2e-173 613.2 339 90.6
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 2.0e-173 612.5 337 89.6
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 2.0e-173 612.5 331 90.6
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 2.0e-173 612.5 339 90.6
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 2.6e-173 612.1 340 90.3
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 3.4e-173 611.7 333 90.7
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 4.5e-173 611.3 333 91.6
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 5.9e-173 610.9 333 91.0
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 5.9e-173 610.9 333 91.6
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 5.9e-173 610.9 339 90.6
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 5.9e-173 610.9 340 90.0
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 5.9e-173 610.9 339 90.3
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 5.9e-173 610.9 333 91.3
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 7.6e-173 610.5 333 91.6
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 1.0e-172 610.1 333 91.6
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 1.3e-172 609.8 338 89.3
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 1.3e-172 609.8 333 91.3
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 1.7e-172 609.4 339 89.7
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 2.9e-172 608.6 333 91.3
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 2.9e-172 608.6 339 90.0
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 3.8e-172 608.2 339 89.4
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 5.0e-172 607.8 336 89.9
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 5.0e-172 607.8 333 90.4
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 5.0e-172 607.8 339 89.7
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 6.5e-172 607.4 339 89.7
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 6.5e-172 607.4 339 89.4
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 8.4e-172 607.1 339 89.7
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 1.1e-171 606.7 339 89.7
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 4.2e-171 604.7 333 89.8
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 7.2e-171 604.0 337 89.3
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 7.2e-171 604.0 333 90.1
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 7.2e-171 604.0 334 89.5
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 1.2e-170 603.2 339 88.8
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 1.2e-170 603.2 339 88.8
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 1.2e-170 603.2 339 88.8
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 1.2e-170 603.2 309 97.1
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 1.2e-170 603.2 337 88.4
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 2.1e-170 602.4 333 90.4
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 4.6e-170 601.3 339 88.8
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 7.9e-170 600.5 333 90.1
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 1.0e-169 600.1 333 89.5
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 1.3e-169 599.7 335 90.1
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.3e-169 599.7 335 90.1
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 1.3e-169 599.7 338 87.9
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 3.9e-169 598.2 335 89.9
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 5.1e-169 597.8 339 87.6
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 6.7e-169 597.4 339 88.2
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 8.7e-169 597.0 333 89.2
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 1.5e-168 596.3 339 86.1
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 1.9e-168 595.9 381 82.2
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 3.3e-168 595.1 320 92.2
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 3.3e-168 595.1 333 88.6
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 5.7e-168 594.3 336 89.3
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 9.7e-168 593.6 335 89.0
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 1.6e-167 592.8 353 85.8
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 2.2e-167 592.4 339 90.3
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 3.7e-167 591.7 331 88.5
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 3.7e-167 591.7 309 95.1
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 1.1e-166 590.1 339 86.7
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 6.9e-166 587.4 338 85.8
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 1.5e-165 586.3 338 84.6
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 2.0e-165 585.9 338 84.6
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 3.4e-165 585.1 328 89.6
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 4.5e-165 584.7 323 90.7
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 5.9e-165 584.3 338 84.3
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 1.7e-164 582.8 338 83.4
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 3.8e-164 581.6 338 84.0
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 3.8e-164 581.6 335 84.5
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 3.8e-164 581.6 338 84.0
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 8.5e-164 580.5 338 83.7
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 8.5e-164 580.5 338 83.4
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 8.5e-164 580.5 335 84.2
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 8.5e-164 580.5 335 84.5
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 1.1e-163 580.1 339 84.4
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 1.9e-163 579.3 335 84.2
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 1.9e-163 579.3 335 83.9
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 1.9e-163 579.3 335 84.2
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 2.5e-163 578.9 338 83.1
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 3.2e-163 578.6 314 91.7
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 5.5e-163 577.8 333 84.1
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 7.2e-163 577.4 338 84.3
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 1.2e-162 576.6 338 83.1
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 4.6e-162 574.7 338 82.8
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 1.8e-161 572.8 338 82.8
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 8.8e-161 570.5 326 84.7
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 8.8e-161 570.5 350 80.6
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 8.8e-161 570.5 339 86.7
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 1.5e-160 569.7 320 89.4
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.6e-160 568.9 316 90.2
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 3.3e-160 568.5 334 82.6
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 1.5e-157 559.7 317 86.8
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 2.2e-156 555.8 334 81.1
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 2.1e-154 549.3 339 78.8
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 6.1e-154 547.7 381 76.9
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 1.0e-153 547.0 316 83.9
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 2.0e-152 542.7 339 82.6
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 2.6e-152 542.3 333 78.1
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 2.2e-151 539.3 335 79.1
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 1.1e-150 537.0 421 69.4
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 1.6e-149 533.1 335 77.3
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 5.9e-149 531.2 335 77.0
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 3.0e-145 518.8 364 73.1
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 2.9e-140 502.3 271 91.5
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 2.9e-140 502.3 339 79.1
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 1.6e-138 496.5 263 94.3
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 4.7e-138 495.0 289 84.8
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.0e-137 493.8 263 94.3
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.0e-137 493.8 263 94.3
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 9.8e-136 487.3 321 73.2
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 6.8e-129 464.5 337 73.0
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 6.8e-129 464.5 339 73.7
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 6.6e-124 448.0 341 67.7
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 4.0e-121 438.7 238 89.5
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 4.1e-118 428.7 251 82.5
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 8.6e-116 421.0 333 60.7
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 9.5e-115 417.5 251 83.3
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 1.0e-108 397.5 246 78.5
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 1.3e-108 397.1 216 89.8
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 2.3e-105 386.3 317 59.3
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 6.4e-103 378.3 332 58.7
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 7.2e-54 215.3 128 82.8
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 5.1e-44 182.6 164 63.4
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 4.4e-35 152.9 180 53.9
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 3.8e-31 139.8 79 84.8
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 1.8e-28 131.0 74 83.8
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 9.7e-27 125.2 73 82.2
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 6.3e-26 122.5 74 81.1
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 2.3e-20 104.0 109 55.0
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 1.2e-16 91.7 51 88.2
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 1.4e-12 78.2 117 41.0
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 6.8e-12 75.9 42 83.3
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 1.7e-10 71.2 57 66.7
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 1.4e-09 68.2 118 39.0
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 2.4e-09 67.4 60 60.0
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 2.4e-09 67.4 60 60.0
MELO3C032112.2 Cucumis melo HOM05D000002 ORTHO05D000001 1.9e-06 57.8 125 36.0


User provided reference genes

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