Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g033040 Solanum pennellii HOM05D007349 ORTHO05D009317 7.8e-54 213.4 97 100.0
Solyc12g098220.2 Solanum lycopersicum HOM05D007349 ORTHO05D009317 2.0e-41 172.2 81 97.5
PGSC0003DMG400016859 Solanum tuberosum HOM05D007349 ORTHO05D009317 4.9e-40 167.5 81 93.8
Peaxi162Scf00938g00312 Petunia axillaris HOM05D007349 ORTHO05D009317 7.8e-38 160.2 81 90.1
Nitab4.5_0008389g0020 Nicotiana tabacum HOM05D007349 ORTHO05D009317 2.3e-37 158.7 82 92.7
Nitab4.5_0000676g0280 Nicotiana tabacum HOM05D007349 ORTHO05D009317 7.4e-28 127.1 64 92.2
Dinv29581 Davidia involucrata HOM05D007349 ORTHO05D009317 5.8e-25 117.5 78 65.4
Dinv29576 Davidia involucrata HOM05D007349 ORTHO05D009317 1.3e-24 116.3 78 64.1
Cc03_g07560 Coffea canephora HOM05D007349 ORTHO05D009317 2.2e-24 115.5 76 67.1
Nn3g19440 Nelumbo nucifera HOM05D007349 ORTHO05D009317 5.5e-23 110.9 75 68.0
DCAR_024489 Daucus carota HOM05D007349 ORTHO05D009317 9.3e-23 110.2 77 63.6
Haze_11590 Corylus avellana HOM05D007349 ORTHO05D009317 2.1e-22 109.0 78 62.8
Hma1.2p1_2958F.1_g330790 Hydrangea macrophylla HOM05D007349 ORTHO05D009317 2.1e-22 109.0 77 64.9
TAR103G0001 Trochodendron aralioides HOM05D007349 ORTHO05D009317 2.1e-22 109.0 74 70.3
MBI07_g23672_MAGBIO Magnolia biondii HOM05D007349 ORTHO05D009317 2.7e-22 108.6 72 68.1
QL06p023778 Quercus lobata HOM05D007349 ORTHO05D009317 2.7e-22 108.6 75 65.3
RcHm_v2.0_Chr6g0244431 Rosa chinensis HOM05D007349 ORTHO05D009317 2.7e-22 108.6 80 61.2
GSVIVG01029086001 Vitis vinifera HOM05D007349 ORTHO05D009317 2.7e-22 108.6 76 63.2
Cfa011815 Carpinus fangiana HOM05D007349 ORTHO05D009317 4.6e-22 107.8 78 62.8
PSO210G4925 Papaver somniferum HOM05D007349 ORTHO05D009317 4.6e-22 107.8 74 63.5
MSTRG.21955 Avicennia marina HOM05D007349 ORTHO05D009317 7.9e-22 107.1 90 57.8
CSS0029747 Camellia sinensis var. sinensis HOM05D007349 ORTHO05D009317 7.9e-22 107.1 87 60.9
RcHm_v2.0_Chr4g0385541 Rosa chinensis HOM05D007349 ORTHO05D009317 7.9e-22 107.1 80 61.2
CiPaw.01G123800 Carya illinoinensis HOM05D007349 ORTHO05D009317 6.7e-21 104.0 77 59.7
Rhsim09G0053700 Rhododendron simsii HOM05D007349 ORTHO05D009317 6.7e-21 104.0 86 60.5
MD04G1004500 Malus domestica HOM05D007349 ORTHO05D009317 1.5e-20 102.8 79 58.2
FAN12G2695 Fragaria x ananassa HOM05D007349 ORTHO05D009317 1.9e-20 102.4 78 59.0
Phvul.007G134400 Phaseolus vulgaris HOM05D007349 ORTHO05D009317 2.5e-20 102.1 80 57.5
Sabra03G0130400 Salix brachista HOM05D007349 ORTHO05D009317 2.5e-20 102.1 92 56.5
Aqoxy5G00063 Aquilegia oxysepala HOM05D007349 ORTHO05D009317 3.3e-20 101.7 80 60.0
VMungo0720G2898 Vigna mungo HOM05D007349 ORTHO05D009317 5.6e-20 100.9 80 57.5
ClCG05G003470 Citrullus lanatus HOM05D007349 ORTHO05D009317 1.3e-19 99.8 82 57.3
Potri.003G177900 Populus trichocarpa HOM05D007349 ORTHO05D009317 1.3e-19 99.8 79 55.7
PGR142G2055 Punica granatum HOM05D007349 ORTHO05D009317 3.7e-19 98.2 80 52.5
SalBow3G0646 Salvia bowleyana HOM05D007349 ORTHO05D009317 3.7e-19 98.2 77 59.7
FvH4_4g00420 Fragaria vesca HOM05D007349 ORTHO05D009317 4.8e-19 97.8 78 57.7
Ca_10404_v3 Cicer arietinum L. HOM05D007349 ORTHO05D009317 6.2e-19 97.4 80 58.8
Lj5g0019311 Lotus japonicus HOM05D007349 ORTHO05D009317 6.2e-19 97.4 87 52.9
ATR0329G016 Amborella trichopoda HOM05D007349 ORTHO05D009317 8.2e-19 97.1 72 59.7
CsaV3_3G011130 Cucumis sativus L. HOM05D007349 ORTHO05D009317 2.4e-18 95.5 81 55.6
Sed0005273 Sechium edule HOM05D007349 ORTHO05D009317 2.4e-18 95.5 81 54.3
Lsat_1_v5_gn_6_59420 Lactuca sativa HOM05D007349 ORTHO05D009317 3.1e-18 95.1 76 57.9
CANSAT78G2317 Cannabis sativa HOM05D007349 ORTHO05D009317 5.3e-18 94.4 76 60.5
ECA248G1485 Erigeron canadensis HOM05D007349 ORTHO05D009317 5.3e-18 94.4 77 61.0
Lalb_Chr21g0312631 Lupinus albus HOM05D007349 ORTHO05D009317 6.9e-18 94.0 80 58.8
Oeu026866.1 Olea europaea HOM05D007349 ORTHO05D009317 6.9e-18 94.0 139 40.3
EL10Ac3g06899 Beta vulgaris HOM05D007349 ORTHO05D009317 9.0e-18 93.6 77 53.2
Medtr1g090010 Medicago truncatula HOM05D007349 ORTHO05D009317 9.0e-18 93.6 80 56.2
Cpa.g.sc59.118 Carica papaya HOM05D007349 ORTHO05D009317 1.2e-17 93.2 83 51.8
HanXRQChr07g0185641 Helianthus annuus HOM05D007349 ORTHO05D009317 1.2e-17 93.2 72 54.2
Duzib212G0593 Durio zibethinus HOM05D007349 ORTHO05D009317 2.0e-17 92.4 77 58.4
Gohir.A09G052212 Gossypium hirsutum HOM05D007349 ORTHO05D009317 2.0e-17 92.4 82 57.3
Gorai.006G056500 Gossypium raimondii HOM05D007349 ORTHO05D009317 2.0e-17 92.4 82 57.3
arahy.Tifrunner.gnm1.ann1.FV8RA9 Arachis hypogaea HOM05D007349 ORTHO05D009317 2.6e-17 92.0 83 53.0
arahy.Tifrunner.gnm1.ann1.X6WBXQ Arachis hypogaea HOM05D007349 ORTHO05D009317 2.6e-17 92.0 83 53.0
Eucgr.H02845 Eucalyptus grandis HOM05D007349 ORTHO05D009317 2.6e-17 92.0 80 53.8
Psat0s3951g0040 Pisum sativum HOM05D007349 ORTHO05D009317 3.4e-17 91.7 80 56.2
Ciclev10005791m.g Citrus clementina HOM05D007349 ORTHO05D009317 5.8e-17 90.9 77 53.2
FAN22G0302 Fragaria x ananassa HOM05D007349 ORTHO05D009317 5.8e-17 90.9 90 50.0
Gohir.D09G052924 Gossypium hirsutum HOM05D007349 ORTHO05D009317 5.8e-17 90.9 82 57.3
TPR.G13407 Trifolium pratense HOM05D007349 ORTHO05D009317 5.8e-17 90.9 80 55.0
vmacro00487 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 5.8e-17 90.9 82 56.1
Thecc.04G207000 Theobroma cacao HOM05D007349 ORTHO05D009317 7.6e-17 90.5 79 55.7
TWI09G1137 Tripterygium wilfordii HOM05D007349 ORTHO05D009317 7.6e-17 90.5 69 62.3
AT4G13690 Arabidopsis thaliana HOM05D007349 ORTHO05D009317 1.3e-16 89.7 79 55.7
Manes.03G149400 Manihot esculenta HOM05D007349 ORTHO05D009317 2.2e-16 89.0 73 53.4
CARHR219460 Cardamine hirsuta HOM05D007349 ORTHO05D009317 2.9e-16 88.6 84 52.4
Glyma.20G197951 Glycine max HOM05D007349 ORTHO05D009317 4.9e-16 87.8 82 53.7
Migut.N00367 Erythranthe guttata HOM05D007349 ORTHO05D009317 8.4e-16 87.0 45 77.8
Ah.13g075780 Amaranthus hybridus HOM05D007349 ORTHO05D009317 1.9e-15 85.9 87 42.5
Carub.0007s2878 Capsella rubella HOM05D007349 ORTHO05D009317 1.9e-15 85.9 54 66.7
SGA_v2.0_scaffold31G12592 Striga asiatica HOM05D007349 ORTHO05D009317 2.5e-15 85.5 97 47.4
TAR636G1730 Trochodendron aralioides HOM05D007349 ORTHO05D009317 3.2e-15 85.1 41 85.4
MELO3C006324.2 Cucumis melo HOM05D007349 ORTHO05D009317 7.1e-15 84.0 102 43.1
AL7G42820 Arabidopsis lyrata HOM05D007349 ORTHO05D009317 9.3e-15 83.6 51 68.6
Hund19205 Selenicereus undatus HOM05D007349 ORTHO05D009317 9.3e-15 83.6 72 47.2
Thhalv10026053m.g Eutrema salsugineum HOM05D007349 ORTHO05D009317 1.2e-14 83.2 85 47.1
Prupe.1G004200 Prunus persica HOM05D007349 ORTHO05D009317 1.6e-14 82.8 41 78.0
THA.LOC104808722 Tarenaya hassleriana HOM05D007349 ORTHO05D009317 2.7e-14 82.0 45 75.6
Glyma.10G192600 Glycine max HOM05D007349 ORTHO05D009317 7.9e-14 80.5 83 51.8
BcaB03g16060 Brassica carinata HOM05D007349 ORTHO05D009317 1.0e-13 80.1 78 51.3
A04p08500 Brassica napus HOM05D007349 ORTHO05D009317 1.3e-13 79.7 80 50.0
Aa31LG9G3970 Aethionema arabicum HOM05D007349 ORTHO05D009317 3.0e-13 78.6 93 46.2
unitig_8.g4490 Utricularia gibba HOM05D007349 ORTHO05D009317 3.0e-13 78.6 77 46.8
BraA04t16541Z Brassica rapa HOM05D007349 ORTHO05D009317 8.7e-13 77.0 80 48.8
C04p42240 Brassica napus HOM05D007349 ORTHO05D009317 1.5e-12 76.3 78 48.7
Sp7g11450 Schrenkiella parvula HOM05D007349 ORTHO05D009317 1.5e-12 76.3 80 50.0
BcaC02g09398 Brassica carinata HOM05D007349 ORTHO05D009317 2.5e-12 75.5 78 47.4
Zm00001eb046010 Zea mays HOM05D007349 ORTHO05D009317 2.5e-12 75.5 88 45.5
BolC4t25802H Brassica oleracea HOM05D007349 ORTHO05D009317 3.3e-12 75.1 78 47.4
AUR62015355 Chenopodium quinoa HOM05D007349 ORTHO05D009317 1.6e-11 72.8 79 45.6
AUR62012020 Chenopodium quinoa HOM05D007349 ORTHO05D009317 4.8e-11 71.2 70 50.0
SHI01057 Sapria himalayana HOM05D007349 ORTHO05D009317 1.3e-08 63.2 85 38.8
Pp3c2_23160 Physcomitrium patens HOM05D007349 ORTHO05D009317 1.7e-08 62.8 70 45.7


User provided reference genes

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