Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g032450 Solanum pennellii HOM05D007257 ORTHO05D008924 7.1e-62 240.4 116 100.0
PGSC0003DMG400029271 Solanum tuberosum HOM05D007257 ORTHO05D008924 1.2e-53 213.0 116 87.1
Peaxi162Scf00169g00094 Petunia axillaris HOM05D007257 ORTHO05D008924 2.2e-34 149.1 119 63.9
Nitab4.5_0001110g0010 Nicotiana tabacum HOM05D007257 ORTHO05D008924 5.3e-33 144.4 119 63.9
Nitab4.5_0000160g0050 Nicotiana tabacum HOM05D007257 ORTHO05D008924 6.1e-21 104.4 116 57.8
Migut.N03023 Erythranthe guttata HOM05D007257 ORTHO05D008924 1.4e-20 103.2 118 48.3
Manes.01G009800 Manihot esculenta HOM05D007257 ORTHO05D008924 1.6e-16 89.7 116 47.4
vmacro00725 Vaccinium macrocarpon HOM05D007257 ORTHO05D008924 1.7e-15 86.3 124 44.4
Atru.chr3.1975 Acer truncatum HOM05D007257 ORTHO05D008924 1.9e-14 82.8 120 40.0
Migut.G00917 Erythranthe guttata HOM05D007257 ORTHO05D008924 2.5e-14 82.4 118 44.9
Peaxi162Scf00057g00224 Petunia axillaris HOM05D007257 ORTHO05D008924 2.5e-14 82.4 116 50.0
Rhsim09G0003000 Rhododendron simsii HOM05D007257 ORTHO05D008924 2.5e-14 82.4 119 46.2
Gohir.D09G190900 Gossypium hirsutum HOM05D007257 ORTHO05D008924 4.2e-14 81.6 114 42.1
Gorai.006G213700 Gossypium raimondii HOM05D007257 ORTHO05D008924 4.2e-14 81.6 114 42.1
Haze_11125 Corylus avellana HOM05D007257 ORTHO05D008924 5.5e-14 81.3 123 43.1
Oeu018062.1 Olea europaea HOM05D007257 ORTHO05D008924 9.4e-14 80.5 122 45.1
COL.COLO4_14410 Corchorus olitorius HOM05D007257 ORTHO05D008924 1.6e-13 79.7 127 44.1
Gohir.A09G196300 Gossypium hirsutum HOM05D007257 ORTHO05D008924 2.1e-13 79.3 114 41.2
Rhsim09G0003300 Rhododendron simsii HOM05D007257 ORTHO05D008924 2.7e-13 79.0 115 43.5
Cfa008520 Carpinus fangiana HOM05D007257 ORTHO05D008924 3.6e-13 78.6 119 41.2
QL10p064610 Quercus lobata HOM05D007257 ORTHO05D008924 4.7e-13 78.2 122 40.2
QL10p065732 Quercus lobata HOM05D007257 ORTHO05D008924 4.7e-13 78.2 122 40.2
SalBow3G3102 Salvia bowleyana HOM05D007257 ORTHO05D008924 4.7e-13 78.2 120 42.5
CiPaw.01G202100 Carya illinoinensis HOM05D007257 ORTHO05D008924 6.1e-13 77.8 124 45.2
Ciclev10022922m.g Citrus clementina HOM05D007257 ORTHO05D008924 1.0e-12 77.0 124 39.5
PGR042G0806 Punica granatum HOM05D007257 ORTHO05D008924 1.8e-12 76.3 122 41.0
TWI15G0669 Tripterygium wilfordii HOM05D007257 ORTHO05D008924 1.8e-12 76.3 119 39.5
Lalb_Chr12g0202631 Lupinus albus HOM05D007257 ORTHO05D008924 4.0e-12 75.1 120 42.5
PGSC0003DMG400020384 Solanum tuberosum HOM05D007257 ORTHO05D008924 5.2e-12 74.7 119 44.5
Thecc.05G001300 Theobroma cacao HOM05D007257 ORTHO05D008924 5.2e-12 74.7 120 39.2
Sopen12g009180 Solanum pennellii HOM05D007257 ORTHO05D008924 8.8e-12 73.9 117 46.2
SGA_v2.0_scaffold25G11017 Striga asiatica HOM05D007257 ORTHO05D008924 3.4e-11 72.0 116 38.8
Glyma.04G203100 Glycine max HOM05D007257 ORTHO05D008924 1.3e-10 70.1 116 37.1
Potri.017G002100 Populus trichocarpa HOM05D007257 ORTHO05D008924 1.3e-10 70.1 111 40.5
Actinidia18394 Actinidia chinensis HOM05D008933 ORTHO05D011098 1.7e-10 69.7 107 39.3
DCAR_023792 Daucus carota HOM05D007257 ORTHO05D008924 3.7e-10 68.6 117 34.2
Dinv33249 Davidia involucrata HOM05D008933 ORTHO05D011098 3.7e-10 68.6 115 39.1
Nn7g37449 Nelumbo nucifera HOM05D007257 ORTHO05D008924 3.7e-10 68.6 122 41.8
Solyc12g017960.1 Solanum lycopersicum HOM05D007257 ORTHO05D008924 3.7e-10 68.6 116 41.4
Eucgr.A00421 Eucalyptus grandis HOM05D007257 ORTHO05D008924 4.8e-10 68.2 119 31.9
SGA_v2.0_scaffold12G06221 Striga asiatica HOM05D007257 ORTHO05D008924 1.1e-09 67.0 117 40.2
THA.LOC104827561 Tarenaya hassleriana HOM05D007257 ORTHO05D008924 1.4e-09 66.6 121 35.5
Glyma.05G198900 Glycine max HOM05D007257 ORTHO05D008924 2.4e-09 65.9 125 36.8
Glyma.06G162400 Glycine max HOM05D007257 ORTHO05D008924 3.1e-09 65.5 120 41.7
Potri.007G145500 Populus trichocarpa HOM05D007257 ORTHO05D008924 3.1e-09 65.5 111 36.9
Ah.07g203290 Amaranthus hybridus HOM05D007257 ORTHO05D008924 4.1e-09 65.1 125 35.2
Phvul.009G159100 Phaseolus vulgaris HOM05D007257 ORTHO05D008924 5.4e-09 64.7 116 34.5
Sc13g0007600 Simmondsia chinensis HOM05D007257 ORTHO05D008924 5.4e-09 64.7 127 38.6
AT2G44010 Arabidopsis thaliana HOM05D007257 ORTHO05D008924 7.0e-09 64.3 124 35.5
Sabra07G0115500 Salix brachista HOM05D007257 ORTHO05D008924 7.0e-09 64.3 111 35.1
Manes.05G207200 Manihot esculenta HOM05D007257 ORTHO05D008924 9.1e-09 63.9 116 39.7
Nn1g09433 Nelumbo nucifera HOM05D007257 ORTHO05D008924 9.1e-09 63.9 123 37.4
Dinv24749 Davidia involucrata HOM05D007257 ORTHO05D008924 1.2e-08 63.5 102 44.1
TAR365G0873 Trochodendron aralioides HOM05D007257 ORTHO05D008924 1.2e-08 63.5 115 39.1
EL10Ac3g06173 Beta vulgaris HOM05D007257 ORTHO05D008924 1.6e-08 63.2 131 35.1
Carub.0004s2657 Capsella rubella HOM05D007257 ORTHO05D008924 2.7e-08 62.4 124 34.7
CiPaw.02G125200 Carya illinoinensis HOM05D007257 ORTHO05D008924 2.7e-08 62.4 92 42.4
Lj1g0006483 Lotus japonicus HOM05D007257 ORTHO05D008924 4.5e-08 61.6 123 35.8
AL4G42890 Arabidopsis lyrata HOM05D007257 ORTHO05D008924 1.0e-07 60.5 124 34.7
Medtr3g098390 Medicago truncatula HOM05D007257 ORTHO05D008924 1.0e-07 60.5 120 36.7
Oeu039258.1 Olea europaea HOM05D007257 ORTHO05D008924 1.7e-07 59.7 109 38.5
Sp4g26100 Schrenkiella parvula HOM05D007257 ORTHO05D008924 1.7e-07 59.7 123 30.9
Lalb_Chr11g0068971 Lupinus albus HOM05D007257 ORTHO05D008924 2.3e-07 59.3 122 36.9
Psat5g055880 Pisum sativum HOM05D007257 ORTHO05D008924 2.3e-07 59.3 119 35.3
Aa31LG1G25680 Aethionema arabicum HOM05D007257 ORTHO05D008924 2.9e-07 58.9 117 34.2
Sabra17G0006100 Salix brachista HOM05D007257 ORTHO05D008924 2.9e-07 58.9 85 41.2
Sp5g03270 Schrenkiella parvula HOM05D007257 ORTHO05D008924 5.0e-07 58.2 124 33.9
AUR62002488 Chenopodium quinoa HOM05D007257 ORTHO05D008924 8.6e-07 57.4 115 37.4
AT3G59880 Arabidopsis thaliana HOM05D007257 ORTHO05D008924 1.1e-06 57.0 131 33.6
TPR.G7792 Trifolium pratense HOM05D007257 ORTHO05D008924 1.5e-06 56.6 118 33.9
BcaC07g40552 Brassica carinata HOM05D007257 ORTHO05D008924 1.9e-06 56.2 127 32.3
C04p04930 Brassica napus HOM05D007257 ORTHO05D008924 1.9e-06 56.2 124 30.6
C08p34830 Brassica napus HOM05D007257 ORTHO05D008924 1.9e-06 56.2 127 32.3
Glyma.08G006200 Glycine max HOM05D007257 ORTHO05D008924 2.5e-06 55.8 123 35.8
Nn1g09434 Nelumbo nucifera HOM05D007257 ORTHO05D008924 2.5e-06 55.8 120 34.2
Prupe.7G270300 Prunus persica HOM05D007257 ORTHO05D008924 2.5e-06 55.8 151 31.1
BolC4t22123H Brassica oleracea HOM05D007257 ORTHO05D008924 3.3e-06 55.5 124 29.8
BolC8t51085H Brassica oleracea HOM05D007257 ORTHO05D008924 3.3e-06 55.5 127 32.3
BcaC02g12345 Brassica carinata HOM05D007257 ORTHO05D008924 4.2e-06 55.1 124 29.8
A05p04160 Brassica napus HOM05D007257 ORTHO05D008924 4.2e-06 55.1 114 33.3
A09p52160 Brassica napus HOM05D007257 ORTHO05D008924 4.2e-06 55.1 127 32.3
BraA05t19402Z Brassica rapa HOM05D007257 ORTHO05D008924 4.2e-06 55.1 114 33.3
BraA09t40647Z Brassica rapa HOM05D007257 ORTHO05D008924 4.2e-06 55.1 127 32.3
Hma1.2p1_1782F.1_g302120 Hydrangea macrophylla HOM05D007257 ORTHO05D008924 9.5e-06 53.9 52 53.8
TPR.G12885 Trifolium pratense HOM05D033974 ORTHO05D008924 9.5e-06 53.9 90 40.0


User provided reference genes

Program Settings