Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g032240 Solanum pennellii HOM05D006706 ORTHO05D008794 1.4e-97 359.8 201 100.0
Solyc12g096390.2 Solanum lycopersicum HOM05D006706 ORTHO05D008794 1.0e-92 343.6 201 87.6
CAN.G566.65 Capsicum annuum HOM05D006706 ORTHO05D008794 2.1e-77 292.7 202 76.7
Nitab4.5_0001159g0140 Nicotiana tabacum HOM05D006706 ORTHO05D008794 3.0e-76 288.9 202 84.2
Nitab4.5_0010092g0010 Nicotiana tabacum HOM05D006706 ORTHO05D008794 2.6e-75 285.8 202 83.2
PGSC0003DMG400029370 Solanum tuberosum HOM05D006706 ORTHO05D008794 8.3e-66 254.2 164 90.9
Peaxi162Scf00459g00840 Petunia axillaris HOM05D006706 ORTHO05D008794 4.5e-64 248.4 199 69.3
Oeu018568.1 Olea europaea HOM05D006706 ORTHO05D008794 3.7e-58 228.8 201 60.7
Migut.A00436 Erythranthe guttata HOM05D006706 ORTHO05D008794 1.8e-57 226.5 121 87.6
RcHm_v2.0_Chr1g0366021 Rosa chinensis HOM05D006706 ORTHO05D008794 4.1e-57 225.3 126 84.1
FAN27G0070 Fragaria x ananassa HOM05D006706 ORTHO05D008794 7.0e-57 224.6 126 84.1
Eucgr.C04010 Eucalyptus grandis HOM05D006706 ORTHO05D008794 9.2e-57 224.2 118 88.1
MD08G1127800 Malus domestica HOM05D006706 ORTHO05D008794 9.2e-57 224.2 123 84.6
Lj7C748T8 Lonicera japonica HOM05D006706 ORTHO05D008794 1.6e-56 223.4 127 81.9
QL12p025335 Quercus lobata HOM05D006706 ORTHO05D008794 1.6e-56 223.4 122 85.2
FvH4_2g36680 Fragaria vesca HOM05D006706 ORTHO05D008794 2.0e-56 223.0 126 83.3
FAN20G0608 Fragaria x ananassa HOM05D006706 ORTHO05D008794 2.0e-56 223.0 126 83.3
Actinidia22256 Actinidia chinensis HOM05D006706 ORTHO05D008794 5.9e-56 221.5 121 86.8
Haze_21755 Corylus avellana HOM05D006706 ORTHO05D008794 5.9e-56 221.5 119 86.6
Rhsim07G0178100 Rhododendron simsii HOM05D006706 ORTHO05D008794 5.9e-56 221.5 118 85.6
MSTRG.25780 Avicennia marina HOM05D006706 ORTHO05D008794 1.0e-55 220.7 123 85.4
Thecc.09G008100 Theobroma cacao HOM05D006706 ORTHO05D008794 1.0e-55 220.7 123 85.4
COL.COLO4_19024 Corchorus olitorius HOM05D006706 ORTHO05D008794 1.3e-55 220.3 122 85.2
Potri.018G008000 Populus trichocarpa HOM05D006706 ORTHO05D008794 1.3e-55 220.3 118 87.3
DCAR_006314 Daucus carota HOM05D006706 ORTHO05D008794 1.7e-55 219.9 122 83.6
Duzib187G1270 Durio zibethinus HOM05D006706 ORTHO05D008794 1.7e-55 219.9 118 88.1
RcHm_v2.0_Chr6g0305051 Rosa chinensis HOM05D006706 ORTHO05D008794 1.7e-55 219.9 126 83.3
AL6G21240 Arabidopsis lyrata HOM05D006706 ORTHO05D008794 2.3e-55 219.5 118 87.3
Haze_21752 Corylus avellana HOM05D006706 ORTHO05D008794 2.3e-55 219.5 119 86.6
Sabra18G0015100 Salix brachista HOM05D006706 ORTHO05D008794 2.3e-55 219.5 118 85.6
Nn3g19671 Nelumbo nucifera HOM05D006706 ORTHO05D008794 2.9e-55 219.2 127 80.3
Prupe.1G459500 Prunus persica HOM05D006706 ORTHO05D008794 2.9e-55 219.2 118 87.3
THA.LOC104814973 Tarenaya hassleriana HOM05D006706 ORTHO05D008794 3.8e-55 218.8 121 83.5
TWI34G0378 Tripterygium wilfordii HOM05D006706 ORTHO05D008794 3.8e-55 218.8 118 88.1
Gorai.010G122100 Gossypium raimondii HOM05D006706 ORTHO05D008794 5.0e-55 218.4 118 87.3
AT5G10700 Arabidopsis thaliana HOM05D006706 ORTHO05D008794 6.6e-55 218.0 117 86.3
Ciclev10009845m.g Citrus clementina HOM05D006706 ORTHO05D008794 6.6e-55 218.0 127 83.5
Thhalv10014763m.g Eutrema salsugineum HOM05D006706 ORTHO05D008794 6.6e-55 218.0 125 80.8
CANSAT78G2093 Cannabis sativa HOM05D006706 ORTHO05D008794 1.1e-54 217.2 118 85.6
Manes.03G004300 Manihot esculenta HOM05D006706 ORTHO05D008794 1.1e-54 217.2 118 87.3
SalBow4G1165 Salvia bowleyana HOM05D006706 ORTHO05D008794 1.1e-54 217.2 116 86.2
Sp6g32760 Schrenkiella parvula HOM05D006706 ORTHO05D008794 1.1e-54 217.2 118 85.6
A03p04700 Brassica napus HOM05D006706 ORTHO05D008794 1.5e-54 216.9 118 85.6
Cpa.g.sc23.24 Carica papaya HOM05D006706 ORTHO05D008794 1.5e-54 216.9 118 87.3
Psat0s1809g0040 Pisum sativum HOM05D006706 ORTHO05D008794 1.5e-54 216.9 118 84.7
GSVIVG01035513001 Vitis vinifera HOM05D006706 ORTHO05D008794 1.5e-54 216.9 200 55.5
BraA03t09810Z Brassica rapa HOM05D006706 ORTHO05D008794 1.9e-54 216.5 118 85.6
Lalb_Chr23g0269141 Lupinus albus HOM05D006706 ORTHO05D008794 2.5e-54 216.1 183 63.9
vmacro05047 Vaccinium macrocarpon HOM05D006706 ORTHO05D008794 2.5e-54 216.1 118 86.4
Atru.chr7.2653 Acer truncatum HOM05D006706 ORTHO05D008794 3.3e-54 215.7 195 66.2
CARHR202620 Cardamine hirsuta HOM05D006706 ORTHO05D008794 3.3e-54 215.7 117 85.5
CiPaw.08G020300 Carya illinoinensis HOM05D006706 ORTHO05D008794 3.3e-54 215.7 119 85.7
Carub.0006s0917 Capsella rubella HOM05D006706 ORTHO05D008794 4.3e-54 215.3 118 85.6
Cfa013279 Carpinus fangiana HOM05D006706 ORTHO05D008794 5.6e-54 214.9 119 84.0
PSO063G0792 Papaver somniferum HOM05D006706 ORTHO05D008794 5.6e-54 214.9 180 61.1
BcaB01g06271 Brassica carinata HOM05D006706 ORTHO05D008794 7.3e-54 214.5 118 84.7
PSO170G0804 Papaver somniferum HOM05D006706 ORTHO05D008794 7.3e-54 214.5 119 84.9
PGR044G2738 Punica granatum HOM05D006706 ORTHO05D008794 7.3e-54 214.5 118 83.9
CSS0022194 Camellia sinensis var. sinensis HOM05D006706 ORTHO05D008794 9.5e-54 214.2 118 85.6
BcaC04g19291 Brassica carinata HOM05D006706 ORTHO05D008794 1.6e-53 213.4 118 83.9
Dinv26561 Davidia involucrata HOM05D006706 ORTHO05D008794 2.1e-53 213.0 184 62.5
VMungo1309G0608 Vigna mungo HOM05D006706 ORTHO05D008794 2.1e-53 213.0 118 83.9
arahy.Tifrunner.gnm1.ann1.G0PQAF Arachis hypogaea HOM05D006706 ORTHO05D008794 2.8e-53 212.6 122 80.3
AUR62020287 Chenopodium quinoa HOM05D006706 ORTHO05D008794 2.8e-53 212.6 118 84.7
Duzib168G0001 Durio zibethinus HOM05D006706 ORTHO05D008794 2.8e-53 212.6 118 85.6
TPR.G12362 Trifolium pratense HOM05D006706 ORTHO05D008794 2.8e-53 212.6 122 80.3
Aa31LG3G16430 Aethionema arabicum HOM05D006706 ORTHO05D008794 6.1e-53 211.5 118 83.9
Ca_15656_v3 Cicer arietinum L. HOM05D006706 ORTHO05D008794 6.1e-53 211.5 121 81.8
Ca_15664_v3 Cicer arietinum L. HOM05D006706 ORTHO05D008794 6.1e-53 211.5 121 81.8
Glyma.06G077100 Glycine max HOM05D006706 ORTHO05D008794 6.1e-53 211.5 118 83.9
arahy.Tifrunner.gnm1.ann1.92NGGW Arachis hypogaea HOM05D006706 ORTHO05D008794 8.0e-53 211.1 122 79.5
BcaB01g05507 Brassica carinata HOM05D006706 ORTHO05D008794 8.0e-53 211.1 118 82.2
C03p05410 Brassica napus HOM05D006706 ORTHO05D008794 8.0e-53 211.1 118 82.2
Glyma.04G075900 Glycine max HOM05D006706 ORTHO05D008794 1.0e-52 210.7 118 83.9
ECA246G3311 Erigeron canadensis HOM05D006706 ORTHO05D008794 1.4e-52 210.3 119 82.4
Medtr3g108900 Medicago truncatula HOM05D006706 ORTHO05D008794 2.3e-52 209.5 118 83.1
Hund07113 Selenicereus undatus HOM05D006706 ORTHO05D008794 2.3e-52 209.5 118 82.2
Lsat_1_v5_gn_3_19441 Lactuca sativa HOM05D006706 ORTHO05D008794 3.1e-52 209.1 119 81.5
Phvul.009G101700 Phaseolus vulgaris HOM05D006706 ORTHO05D008794 3.1e-52 209.1 115 84.3
CDE02G4751 Ceratophyllum demersum HOM05D006706 ORTHO05D008794 4.0e-52 208.8 118 82.2
Sed0007748 Sechium edule HOM05D006706 ORTHO05D008794 4.0e-52 208.8 118 83.1
CsaV3_2G031370 Cucumis sativus L. HOM05D006706 ORTHO05D008794 5.2e-52 208.4 123 78.9
Lj1g0012669 Lotus japonicus HOM05D006706 ORTHO05D008794 6.8e-52 208.0 118 82.2
ATR0580G320 Amborella trichopoda HOM05D006706 ORTHO05D008794 3.4e-51 205.7 118 81.4
Aqoxy7G02908 Aquilegia oxysepala HOM05D006706 ORTHO05D008794 3.4e-51 205.7 118 81.4
HanXRQChr17g0538031 Helianthus annuus HOM05D006706 ORTHO05D008794 3.4e-51 205.7 119 79.8
CiPaw.07G211900 Carya illinoinensis HOM05D006706 ORTHO05D008794 1.7e-50 203.4 116 82.8
MBI14_g10732_MAGBIO Magnolia biondii HOM05D006706 ORTHO05D008794 3.7e-50 202.2 132 75.8
HPP92_021967 Vanilla planifolia HOM05D006706 ORTHO05D008794 8.3e-50 201.1 124 79.0
MELO3C011186.2 Cucumis melo HOM05D006706 ORTHO05D008794 1.4e-49 200.3 119 79.8
HPP92_021941 Vanilla planifolia HOM05D006706 ORTHO05D008794 3.2e-49 199.1 124 78.2
Zm00001eb071580 Zea mays HOM05D006706 ORTHO05D008794 7.0e-49 198.0 124 74.2
SEGI_18071 Sequoiadendron giganteum HOM05D006706 ORTHO05D008794 9.2e-49 197.6 118 73.7
Os04g0605200 Oryza sativa ssp. japonica HOM05D006706 ORTHO05D008794 4.6e-48 195.3 118 76.3
Pp3c18_3890 Physcomitrium patens HOM05D006706 ORTHO05D008794 6.0e-48 194.9 120 72.5
AagrBONN_evm.TU.Sc2ySwM_228.645 Anthoceros agrestis HOM05D000036 ORTHO05D038461 7.8e-48 194.5 120 75.0
AUR62037716 Chenopodium quinoa HOM05D006706 ORTHO05D008794 1.9e-46 189.9 105 82.9
SGA_v2.0_scaffold193G40663 Striga asiatica HOM05D006706 ORTHO05D008794 2.5e-46 189.5 148 64.9
SMO203G0167 Selaginella moellendorffii HOM05D006706 ORTHO05D008794 2.3e-44 183.0 127 66.9
MD15G1107200 Malus domestica HOM05D006706 ORTHO05D008794 1.1e-41 174.1 138 66.7
Ah.10g024780 Amaranthus hybridus HOM05D006706 ORTHO05D008794 1.4e-41 173.7 99 78.8
Mapoly0013s0161 Marchantia polymorpha HOM05D006706 ORTHO05D008794 3.2e-41 172.6 120 65.8
ClCG08G012660 Citrullus lanatus HOM05D006706 ORTHO05D008794 3.5e-40 169.1 131 64.1
unitig_21.g20325 Utricularia gibba HOM05D006706 ORTHO05D008794 3.9e-39 165.6 140 60.7
CBR_g3167 Chara braunii HOM05D006706 ORTHO05D008794 4.7e-37 158.7 125 60.8
Cre10.g449350 Chlamydomonas reinhardtii HOM05D006706 ORTHO05D008794 1.2e-35 154.1 127 56.7
MCO07G367 Micromonas commoda HOM05D006706 ORTHO05D008794 9.9e-35 151.0 116 61.2
EL10Ac2g02413 Beta vulgaris HOM05D006706 ORTHO05D008794 1.5e-22 110.5 81 66.7
TAR636G3689 Trochodendron aralioides HOM05D006706 ORTHO05D008794 2.5e-22 109.8 66 74.2
Gohir.D06G107400 Gossypium hirsutum HOM05D006706 ORTHO05D008794 1.2e-21 107.5 57 84.2
Sc06g0000170 Simmondsia chinensis HOM05D006706 ORTHO05D008794 2.8e-21 106.3 69 71.0
Gohir.A06G105300 Gossypium hirsutum HOM05D006706 ORTHO05D008794 3.6e-21 105.9 57 82.5
PRCOL_00004161 Prasinoderma coloniale HOM05D006706 ORTHO05D008794 3.6e-21 105.9 126 47.6
Haze_27087 Corylus avellana HOM05D006706 ORTHO05D008794 7.6e-19 98.2 120 43.3
CDE06G2578 Ceratophyllum demersum HOM05D006706 ORTHO05D008794 1.9e-14 83.6 60 63.3
A10p26910 Brassica napus HOM05D006706 ORTHO05D028018 1.4e-09 67.4 34 91.2
Sed0005624 Sechium edule HOM05D006706 ORTHO05D373521 6.7e-07 58.5 60 50.0


User provided reference genes

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