Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g032190 Solanum pennellii HOM05D007029 ORTHO05D008258 3.7e-100 368.2 188 100.0
CAN.G947.13 Capsicum annuum HOM05D007029 ORTHO05D008258 4.4e-93 344.7 188 93.6
PGSC0003DMG400029282 Solanum tuberosum HOM05D007029 ORTHO05D008258 6.1e-87 324.3 178 93.3
Nitab4.5_0001159g0100 Nicotiana tabacum HOM05D007029 ORTHO05D008258 2.3e-86 322.4 188 87.2
Nitab4.5_0003963g0040 Nicotiana tabacum HOM05D007029 ORTHO05D008258 3.0e-86 322.0 188 87.8
Lj7A749T66 Lonicera japonica HOM05D007029 ORTHO05D008258 3.6e-71 271.9 189 73.0
Migut.A00446 Erythranthe guttata HOM05D007029 ORTHO05D008258 8.0e-71 270.8 167 77.8
MSTRG.25772 Avicennia marina HOM05D007029 ORTHO05D008258 1.0e-70 270.4 168 77.4
CSS0017002 Camellia sinensis var. sinensis HOM05D007029 ORTHO05D008258 1.5e-69 266.5 188 71.3
CSS0043998 Camellia sinensis var. sinensis HOM05D007029 ORTHO05D008258 1.5e-69 266.5 188 71.3
Cfa013252 Carpinus fangiana HOM05D007029 ORTHO05D008258 2.2e-68 262.7 190 67.9
SalBow4G2612 Salvia bowleyana HOM05D007029 ORTHO05D008258 2.2e-68 262.7 158 80.4
Glyma.14G132800 Glycine max HOM05D007029 ORTHO05D008258 4.8e-68 261.5 181 70.2
Duzib168G0066 Durio zibethinus HOM05D007029 ORTHO05D008258 6.3e-68 261.2 175 72.0
PGR044G0703 Punica granatum HOM05D007029 ORTHO05D008258 1.1e-67 260.4 165 75.8
Sc09g0007640 Simmondsia chinensis HOM05D007029 ORTHO05D008258 1.8e-67 259.6 188 68.1
Sc09g0007900 Simmondsia chinensis HOM05D007029 ORTHO05D008258 7.0e-67 257.7 188 67.6
Phvul.001G057900 Phaseolus vulgaris HOM05D007029 ORTHO05D008258 9.1e-67 257.3 189 68.3
MD15G1110100 Malus domestica HOM05D007029 ORTHO05D008258 2.0e-66 256.1 191 65.4
Lalb_Chr24g0402421 Lupinus albus HOM05D007029 ORTHO05D008258 2.7e-66 255.8 172 69.8
MELO3C003643.2 Cucumis melo HOM05D007029 ORTHO05D008258 4.5e-66 255.0 184 66.8
Sabra06G0216100 Salix brachista HOM05D007029 ORTHO05D008258 4.5e-66 255.0 189 65.6
Prupe.1G462300 Prunus persica HOM05D007029 ORTHO05D008258 5.9e-66 254.6 175 69.7
FvH4_2g30670 Fragaria vesca HOM05D007029 ORTHO05D008258 1.0e-65 253.8 188 65.4
Sed0023533 Sechium edule HOM05D007029 ORTHO05D008258 1.0e-65 253.8 165 69.1
GSVIVG01035546001 Vitis vinifera HOM05D007029 ORTHO05D008258 1.0e-65 253.8 169 71.0
Lj5g0005194 Lotus japonicus HOM05D007029 ORTHO05D008258 1.3e-65 253.4 179 67.0
Oeu059287.2 Olea europaea HOM05D007029 ORTHO05D008258 2.3e-65 252.7 175 74.3
Potri.006G278500 Populus trichocarpa HOM05D007029 ORTHO05D008258 2.3e-65 252.7 190 64.7
Hund03277 Selenicereus undatus HOM05D007029 ORTHO05D008258 2.3e-65 252.7 179 68.2
TPR.G12034 Trifolium pratense HOM05D007029 ORTHO05D008258 2.3e-65 252.7 166 71.1
Eucgr.C03998 Eucalyptus grandis HOM05D007029 ORTHO05D008258 8.6e-65 250.8 189 66.7
Psat6g031920 Pisum sativum HOM05D007029 ORTHO05D008258 8.6e-65 250.8 165 70.3
FAN20G2423 Fragaria x ananassa HOM05D007029 ORTHO05D008258 1.5e-64 250.0 188 64.9
Thecc.09G005000 Theobroma cacao HOM05D007029 ORTHO05D008258 1.5e-64 250.0 189 66.1
RcHm_v2.0_Chr6g0312221 Rosa chinensis HOM05D007029 ORTHO05D008258 3.2e-64 248.8 188 64.9
Gorai.010G123900 Gossypium raimondii HOM05D007029 ORTHO05D008258 4.2e-64 248.4 175 69.7
Manes.03G086800 Manihot esculenta HOM05D007029 ORTHO05D008258 4.2e-64 248.4 167 69.5
Nn8g40869 Nelumbo nucifera HOM05D007029 ORTHO05D008258 9.5e-64 247.3 168 67.3
PSO144G0063 Papaver somniferum HOM05D007029 ORTHO05D008258 1.2e-63 246.9 180 66.7
Aqoxy7G02769 Aquilegia oxysepala HOM05D007029 ORTHO05D008258 1.6e-63 246.5 179 67.6
FAN24G0248 Fragaria x ananassa HOM05D007029 ORTHO05D008258 2.1e-63 246.1 188 63.8
unitig_748.g7379 Utricularia gibba HOM05D007029 ORTHO05D008258 2.1e-63 246.1 161 72.7
ATR0626G398 Amborella trichopoda HOM05D007029 ORTHO05D008258 3.6e-63 245.4 187 62.0
TAR626G0900 Trochodendron aralioides HOM05D007029 ORTHO05D008258 1.4e-62 243.4 169 69.2
BraA10t44748Z Brassica rapa HOM05D007029 ORTHO05D008258 4.0e-62 241.9 166 66.3
Ca_12881_v3 Cicer arietinum L. HOM05D007029 ORTHO05D008258 8.8e-62 240.7 171 67.8
BolC9t59447H Brassica oleracea HOM05D007029 ORTHO05D008258 1.2e-61 240.4 173 64.2
Cpa.g.sc10.205 Carica papaya HOM05D007029 ORTHO05D008258 1.5e-61 240.0 205 59.5
BcaB08g37096 Brassica carinata HOM05D007029 ORTHO05D008258 2.6e-61 239.2 173 63.6
CANSAT25G3139 Cannabis sativa HOM05D007029 ORTHO05D008258 2.6e-61 239.2 165 68.5
CiPaw.07G214600 Carya illinoinensis HOM05D007029 ORTHO05D008258 2.6e-61 239.2 177 66.7
CsaV3_3G046940 Cucumis sativus L. HOM05D007029 ORTHO05D008258 2.6e-61 239.2 204 58.8
Cc06_g08830 Coffea canephora HOM05D007029 ORTHO05D008258 3.4e-61 238.8 186 66.1
AL6G21140 Arabidopsis lyrata HOM05D007029 ORTHO05D008258 4.4e-61 238.4 189 61.4
C09p66200 Brassica napus HOM05D007029 ORTHO05D008258 4.4e-61 238.4 189 61.4
BolC9t59441H Brassica oleracea HOM05D007029 ORTHO05D008258 4.4e-61 238.4 189 61.4
CARHR202690 Cardamine hirsuta HOM05D007029 ORTHO05D008258 4.4e-61 238.4 173 63.6
AT5G10620 Arabidopsis thaliana HOM05D007029 ORTHO05D008258 7.5e-61 237.7 173 63.6
Sp6g32830 Schrenkiella parvula HOM05D007029 ORTHO05D008258 7.5e-61 237.7 173 63.6
QL12p024672 Quercus lobata HOM05D007029 ORTHO05D008258 2.2e-60 236.1 170 66.5
Thhalv10014744m.g Eutrema salsugineum HOM05D007029 ORTHO05D008258 2.8e-60 235.7 194 59.3
A10p26970 Brassica napus HOM05D007029 ORTHO05D008258 8.3e-60 234.2 165 65.5
Atru.chr7.2665 Acer truncatum HOM05D007029 ORTHO05D008258 1.1e-59 233.8 192 62.5
THA.LOC104799006 Tarenaya hassleriana HOM05D007029 ORTHO05D008258 1.8e-59 233.0 186 61.3
C09p66570 Brassica napus HOM05D007029 ORTHO05D008258 3.1e-59 232.3 158 68.4
HanXRQChr14g0454741 Helianthus annuus HOM05D007029 ORTHO05D008258 4.1e-59 231.9 187 63.1
Aa31LG3G16490 Aethionema arabicum HOM05D007029 ORTHO05D008258 5.4e-59 231.5 173 61.8
C09p66410 Brassica napus HOM05D007029 ORTHO05D008258 7.0e-59 231.1 158 67.7
Os04g0606900 Oryza sativa ssp. japonica HOM05D007029 ORTHO05D008258 3.5e-58 228.8 173 61.3
EL10Ac2g03716 Beta vulgaris HOM05D007029 ORTHO05D008258 1.3e-57 226.9 178 65.7
SGA_v2.0_scaffold27G11664 Striga asiatica HOM05D007029 ORTHO05D008258 2.9e-57 225.7 246 51.6
TWI63G1096 Tripterygium wilfordii HOM05D007029 ORTHO05D008258 7.3e-56 221.1 177 61.6
Gohir.A06G106900 Gossypium hirsutum HOM05D007029 ORTHO05D008258 4.7e-55 218.4 162 66.7
arahy.Tifrunner.gnm1.ann1.MMLL3W Arachis hypogaea HOM05D007029 ORTHO05D008258 4.0e-54 215.3 180 62.8
Mapoly0056s0124 Marchantia polymorpha HOM05D007029 ORTHO05D008258 5.2e-54 214.9 162 59.9
Glyma.17G201400 Glycine max HOM05D007029 ORTHO05D008258 2.0e-53 213.0 138 72.5
Zm00001eb071440 Zea mays HOM05D007029 ORTHO05D008258 5.7e-53 211.5 174 58.6
Oeu038914.4 Olea europaea HOM05D000263 ORTHO05D008258 3.7e-52 208.8 125 81.6
ClCG05G017440 Citrullus lanatus HOM05D007029 ORTHO05D008258 1.1e-51 207.2 154 63.0
Carub.0006s0910 Capsella rubella HOM05D007029 ORTHO05D008258 1.0e-49 200.7 149 61.7
Solyc12g096330.3 Solanum lycopersicum HOM05D007029 ORTHO05D008258 8.6e-49 197.6 97 99.0
CBR_g21129 Chara braunii HOM05D007029 ORTHO05D008258 1.6e-47 193.4 181 50.8
Pp3c10_14520 Physcomitrium patens HOM05D007029 ORTHO05D008258 2.8e-47 192.6 170 50.6
Ciclev10009808m.g Citrus clementina HOM05D007029 ORTHO05D008258 1.4e-46 190.3 165 57.0
AagrBONN_evm.TU.Sc2ySwM_368.1595 Anthoceros agrestis HOM05D007029 ORTHO05D008258 4.0e-46 188.7 169 52.1
arahy.Tifrunner.gnm1.ann1.J6QZET Arachis hypogaea HOM05D007029 ORTHO05D008258 5.2e-46 188.3 167 59.9
Peaxi162Scf00459g00835 Petunia axillaris HOM05D007029 ORTHO05D008258 3.7e-44 182.2 97 90.7
MBI13_g31530_MAGBIO Magnolia biondii HOM05D007029 ORTHO05D008258 1.9e-43 179.9 200 50.0
SMO145G0271 Selaginella moellendorffii HOM05D007029 ORTHO05D008258 1.9e-43 179.9 158 53.8
Dinv09200 Davidia involucrata HOM05D007029 ORTHO05D008258 4.1e-43 178.7 139 64.0
COL.COLO4_18612 Corchorus olitorius HOM05D007029 ORTHO05D008258 7.0e-43 177.9 119 68.1
Actinidia22252 Actinidia chinensis HOM05D007029 ORTHO05D008258 2.0e-42 176.4 124 68.5
Haze_08560 Corylus avellana HOM05D007029 ORTHO05D008258 6.0e-42 174.9 177 53.7
Oeu059279.1 Olea europaea HOM05D007029 ORTHO05D008258 1.9e-40 169.9 98 86.7
SEGI_22347 Sequoiadendron giganteum HOM05D007029 ORTHO05D008258 9.5e-40 167.5 132 56.8
MCO07G593 Micromonas commoda HOM05D007029 ORTHO05D008258 2.1e-39 166.4 168 46.4
Lsat_1_v5_gn_2_109441 Lactuca sativa HOM05D007029 ORTHO05D008258 1.5e-37 160.2 145 55.2
Cre16.g680100 Chlamydomonas reinhardtii HOM05D007029 ORTHO05D008258 5.4e-35 151.8 159 47.2
CDE04G2652 Ceratophyllum demersum HOM05D000178 ORTHO05D000229 4.6e-34 148.7 109 63.3
Medtr1g010000 Medicago truncatula HOM05D007029 ORTHO05D008258 4.6e-34 148.7 103 68.9
VMungo0647G0111 Vigna mungo HOM05D007029 ORTHO05D008258 7.8e-34 147.9 127 60.6
Ah.10g033770 Amaranthus hybridus HOM05D007029 ORTHO05D008258 2.3e-33 146.4 100 67.0
AUR62020630 Chenopodium quinoa HOM05D007029 ORTHO05D008258 3.0e-33 146.0 116 62.1
AUR62038752 Chenopodium quinoa HOM05D007029 ORTHO05D008258 5.1e-33 145.2 120 63.3
Gohir.D06G109100 Gossypium hirsutum HOM05D007029 ORTHO05D008258 8.6e-33 144.4 102 67.6
C09p66490 Brassica napus HOM05D007029 ORTHO05D008258 2.1e-31 139.8 88 73.9
C09p66660 Brassica napus HOM05D007029 ORTHO05D008258 3.1e-30 136.0 97 63.9
Hma1.2p1_0443F.1_g154050 Hydrangea macrophylla HOM05D007029 ORTHO05D008258 1.9e-27 126.7 75 82.7
Thhalv10000503m.g Eutrema salsugineum HOM05D007029 ORTHO05D008258 2.3e-25 119.8 133 50.4
Haze_21697 Corylus avellana HOM05D000022 ORTHO05D010831 8.6e-25 117.9 131 48.1
PRCOL_00001289 Prasinoderma coloniale HOM05D007029 ORTHO05D008258 1.9e-24 116.7 138 44.9
COL.COLO4_02059 Corchorus olitorius HOM05D007029 ORTHO05D008258 2.4e-19 99.8 155 32.9
Hma1.2p1_0443F.1_g154060 Hydrangea macrophylla HOM05D007029 ORTHO05D008258 2.5e-16 89.7 49 85.7
Hma1.2p1_0443F.1_g154040 Hydrangea macrophylla HOM05D007029 ORTHO05D008258 3.3e-16 89.4 78 56.4
ECA238G0229 Erigeron canadensis HOM05D007029 ORTHO05D008258 1.6e-15 87.0 94 53.2
CDE07G1585 Ceratophyllum demersum HOM05D003168 ORTHO05D003590 4.2e-11 72.4 50 64.0
AT5G10605 Arabidopsis thaliana HOM05D007029 ORTHO05D008258 3.1e-06 56.2 36 72.2


User provided reference genes

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