Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g032020 Solanum pennellii HOM05D006755 ORTHO05D008472 3.9e-132 475.3 344 100.0
Solyc12g096140.3 Solanum lycopersicum HOM05D006755 ORTHO05D008472 6.7e-124 448.0 344 96.5
Nitab4.5_0000943g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 4.4e-99 365.5 350 84.6
Peaxi162Scf00876g00046 Petunia axillaris HOM05D006755 ORTHO05D008472 3.1e-97 359.4 350 82.6
Nitab4.5_0002859g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 1.6e-96 357.1 346 83.5
Nitab4.5_0009982g0010 Nicotiana tabacum HOM05D006755 ORTHO05D008472 2.0e-96 356.7 347 83.0
CAN.G947.37 Capsicum annuum HOM05D006755 ORTHO05D008472 4.5e-96 355.5 347 83.0
PGSC0003DMG400029290 Solanum tuberosum HOM05D006755 ORTHO05D008472 1.0e-95 354.4 357 83.5
Peaxi162Scf00193g00005 Petunia axillaris HOM05D006755 ORTHO05D008472 1.3e-71 274.2 353 72.5
Nitab4.5_0001968g0030 Nicotiana tabacum HOM05D006755 ORTHO05D008472 7.5e-51 205.3 344 63.7
Oeu033356.1 Olea europaea HOM05D006755 ORTHO05D008472 2.1e-48 197.2 327 67.6
Cc08_g09000 Coffea canephora HOM05D006755 ORTHO05D008472 8.6e-47 191.8 346 55.5
Migut.E01827 Erythranthe guttata HOM05D006755 ORTHO05D008472 3.3e-46 189.9 318 65.1
MSTRG.1737 Avicennia marina HOM05D006755 ORTHO05D008472 6.2e-45 185.7 308 69.5
SGA_v2.0_scaffold21G09644 Striga asiatica HOM05D006755 ORTHO05D008472 9.9e-43 178.3 285 69.5
Thecc.02G149300 Theobroma cacao HOM05D006755 ORTHO05D008472 1.4e-41 174.5 315 62.5
Lj9P409T68 Lonicera japonica HOM05D006755 ORTHO05D008472 7.8e-40 168.7 304 67.1
CSS0044736 Camellia sinensis var. sinensis HOM05D006755 ORTHO05D008472 1.3e-39 167.9 223 81.6
Duzib052G1107 Durio zibethinus HOM05D006755 ORTHO05D008472 1.7e-39 167.5 281 66.9
Rhsim12G0052500 Rhododendron simsii HOM05D006755 ORTHO05D008472 1.7e-39 167.5 317 65.0
Dinv41852 Davidia involucrata HOM05D006755 ORTHO05D008472 3.0e-39 166.8 298 68.1
CANSAT25G1067 Cannabis sativa HOM05D006755 ORTHO05D008472 3.9e-39 166.4 314 64.3
PGR142G2394 Punica granatum HOM05D006755 ORTHO05D008472 5.1e-39 166.0 298 66.1
Gorai.013G065500 Gossypium raimondii HOM05D006755 ORTHO05D008472 6.6e-39 165.6 325 65.2
CANSAT25G1651 Cannabis sativa HOM05D006755 ORTHO05D008472 1.1e-38 164.9 314 64.3
Gohir.D13G058100 Gossypium hirsutum HOM05D006755 ORTHO05D008472 3.3e-38 163.3 321 64.8
Manes.15G113000 Manihot esculenta HOM05D006755 ORTHO05D008472 1.2e-37 161.4 325 61.5
COL.COLO4_04807 Corchorus olitorius HOM05D006755 ORTHO05D008472 3.6e-37 159.8 312 60.6
arahy.Tifrunner.gnm1.ann1.0IBU2N Arachis hypogaea HOM05D006755 ORTHO05D008472 4.7e-37 159.5 295 65.1
Ciclev10028759m.g Citrus clementina HOM05D006755 ORTHO05D008472 6.2e-37 159.1 340 62.4
arahy.Tifrunner.gnm1.ann1.HWJ5MG Arachis hypogaea HOM05D006755 ORTHO05D008472 1.1e-36 158.3 294 65.0
Gohir.A13G063800 Gossypium hirsutum HOM05D006755 ORTHO05D008472 1.1e-36 158.3 296 51.0
Duzib132G0679 Durio zibethinus HOM05D006755 ORTHO05D008472 6.8e-36 155.6 297 62.0
TAR376G0479 Trochodendron aralioides HOM05D006755 ORTHO05D008472 1.5e-35 154.5 336 61.3
Aqoxy4G02640 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 5.8e-35 152.5 258 72.5
Glyma.11G065700 Glycine max HOM05D006755 ORTHO05D008472 1.3e-34 151.4 327 57.5
Hma1.2p1_0052F.1_g030470 Hydrangea macrophylla HOM05D006755 ORTHO05D008472 2.2e-34 150.6 395 53.2
Lj2g0006557 Lotus japonicus HOM05D006755 ORTHO05D008472 3.8e-34 149.8 318 61.3
Nn6g31560 Nelumbo nucifera HOM05D006755 ORTHO05D008472 1.4e-33 147.9 375 54.4
Aa31LG6G16930 Aethionema arabicum HOM05D006755 ORTHO05D008472 2.4e-33 147.1 314 56.7
Eucgr.I01549 Eucalyptus grandis HOM05D006755 ORTHO05D008472 5.4e-33 146.0 357 56.0
Lalb_Chr09g0322551 Lupinus albus HOM05D006755 ORTHO05D008472 1.6e-32 144.4 337 57.3
Prupe.8G183200 Prunus persica HOM05D006755 ORTHO05D008472 2.1e-32 144.1 313 64.2
VMungo1215G0649 Vigna mungo HOM05D006755 ORTHO05D008472 2.7e-32 143.7 301 60.8
Psat2g160920 Pisum sativum HOM05D006755 ORTHO05D008472 3.5e-32 143.3 320 59.1
QL11p057006 Quercus lobata HOM05D006755 ORTHO05D008472 3.5e-32 143.3 284 60.2
Glyma.01G176900 Glycine max HOM05D006755 ORTHO05D008472 4.6e-32 142.9 329 56.5
Aqoxy6G03058 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 6.0e-32 142.5 223 75.8
ECA233G3571 Erigeron canadensis HOM05D006755 ORTHO05D008472 6.0e-32 142.5 321 53.9
Ca_00389_v3 Cicer arietinum L. HOM05D006755 ORTHO05D008472 7.8e-32 142.1 322 61.5
DCAR_025005 Daucus carota HOM05D006755 ORTHO05D008472 7.8e-32 142.1 322 60.6
HPP92_025325 Vanilla planifolia HOM05D006755 ORTHO05D008472 7.8e-32 142.1 237 74.7
HanXRQChr07g0186241 Helianthus annuus HOM05D006755 ORTHO05D008472 1.3e-31 141.4 250 64.0
TWI75G0077 Tripterygium wilfordii HOM05D006755 ORTHO05D008472 1.7e-31 141.0 326 59.2
EL10Ac9g21570 Beta vulgaris HOM05D006755 ORTHO05D008472 2.3e-31 140.6 232 73.7
Phvul.002G027800 Phaseolus vulgaris HOM05D006755 ORTHO05D008472 3.0e-31 140.2 325 57.5
TPR.G18806 Trifolium pratense HOM05D006755 ORTHO05D008472 3.0e-31 140.2 296 62.5
CDE04G3036 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 6.6e-31 139.0 260 68.5
Carub.0007s0004 Capsella rubella HOM05D006755 ORTHO05D008472 8.7e-31 138.7 284 63.0
Os01g0546500 Oryza sativa ssp. japonica HOM05D006755 ORTHO05D008472 1.9e-30 137.5 203 76.8
Sp7g37600 Schrenkiella parvula HOM05D006755 ORTHO05D008472 1.9e-30 137.5 300 59.7
Actinidia26119 Actinidia chinensis HOM05D006755 ORTHO05D008472 2.5e-30 137.1 186 82.8
BcaC06g34295 Brassica carinata HOM05D006755 ORTHO05D008472 2.5e-30 137.1 305 60.0
AL7G10050 Arabidopsis lyrata HOM05D006755 ORTHO05D008472 3.3e-30 136.7 290 59.0
Medtr8g098445 Medicago truncatula HOM05D006755 ORTHO05D008472 3.3e-30 136.7 231 72.3
Lj2g0026453 Lotus japonicus HOM05D006755 ORTHO05D008472 4.3e-30 136.3 278 64.7
BolC7t43606H Brassica oleracea HOM05D006755 ORTHO05D008472 7.3e-30 135.6 305 59.0
CARHR293910 Cardamine hirsuta HOM05D006755 ORTHO05D008472 9.6e-30 135.2 277 62.5
Lsat_1_v5_gn_6_28960 Lactuca sativa HOM05D006755 ORTHO05D008472 9.6e-30 135.2 332 56.0
AUR62010217 Chenopodium quinoa HOM05D006755 ORTHO05D008472 1.3e-29 134.8 230 73.5
Thhalv10005467m.g Eutrema salsugineum HOM05D006755 ORTHO05D008472 1.6e-29 134.4 296 60.5
C07p30650 Brassica napus HOM05D006755 ORTHO05D008472 2.8e-29 133.7 305 59.3
Sc18g0006850 Simmondsia chinensis HOM05D006755 ORTHO05D008472 2.8e-29 133.7 328 59.5
CiPaw.06G113100 Carya illinoinensis HOM05D006755 ORTHO05D008472 3.6e-29 133.3 284 58.8
BcaC06g31423 Brassica carinata HOM05D006755 ORTHO05D008472 1.1e-28 131.7 282 57.4
vmacro08131 Vaccinium macrocarpon HOM05D006755 ORTHO05D008472 1.1e-28 131.7 184 84.2
MD05G1145100 Malus domestica HOM05D006755 ORTHO05D008472 1.4e-28 131.3 323 60.1
BraA06t27405Z Brassica rapa HOM05D006755 ORTHO05D008472 1.8e-28 131.0 305 59.7
CsaV3_7G002250 Cucumis sativus L. HOM05D006755 ORTHO05D008472 1.8e-28 131.0 311 60.1
Ah.01g010520 Amaranthus hybridus HOM05D006755 ORTHO05D008472 4.0e-28 129.8 253 67.6
Medtr5g019860 Medicago truncatula HOM05D006755 ORTHO05D008472 9.0e-28 128.6 231 70.1
THA.LOC104823440 Tarenaya hassleriana HOM05D006755 ORTHO05D008472 9.0e-28 128.6 281 58.0
CDE02G4616 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 1.2e-27 128.3 325 57.2
SHI05798 Sapria himalayana HOM05D006755 ORTHO05D008472 1.2e-27 128.3 197 75.6
PSO541G3341 Papaver somniferum HOM05D006755 ORTHO05D008472 1.5e-27 127.9 429 37.3
Zm00001eb342190 Zea mays HOM05D006755 ORTHO05D008472 2.6e-27 127.1 273 58.2
A06p45360 Brassica napus HOM05D006755 ORTHO05D008472 3.4e-27 126.7 305 58.0
AUR62013213 Chenopodium quinoa HOM05D006755 ORTHO05D008472 3.4e-27 126.7 234 70.5
AT4G38150 Arabidopsis thaliana HOM05D006755 ORTHO05D008472 4.5e-27 126.3 172 48.3
HPP92_007220 Vanilla planifolia HOM05D006755 ORTHO05D008472 4.5e-27 126.3 352 54.3
Sed0010179 Sechium edule HOM05D006755 ORTHO05D008472 7.6e-27 125.6 339 56.9
MELO3C024165.2 Cucumis melo HOM05D006755 ORTHO05D008472 3.8e-26 123.2 317 57.7
Cfa005407 Carpinus fangiana HOM05D006755 ORTHO05D008472 1.1e-25 121.7 304 54.3
PSO675G0405 Papaver somniferum HOM05D006755 ORTHO05D008472 9.3e-25 118.6 427 37.2
Sabra04G0141300 Salix brachista HOM05D006755 ORTHO05D008472 2.1e-24 117.5 365 52.6
SalBow1G4250 Salvia bowleyana HOM05D006755 ORTHO05D008472 6.0e-24 115.9 290 45.5
Nn1g06229 Nelumbo nucifera HOM05D006755 ORTHO05D008472 3.9e-23 113.2 96 64.6
Nn3g19301 Nelumbo nucifera HOM05D006755 ORTHO05D008472 5.1e-23 112.8 96 61.5
ATR0605G371 Amborella trichopoda HOM05D006755 ORTHO05D008472 1.1e-22 111.7 111 56.8
Actinidia20592 Actinidia chinensis HOM05D006755 ORTHO05D008472 4.3e-22 109.8 58 91.4
Potri.004G209500 Populus trichocarpa HOM05D006755 ORTHO05D008472 1.3e-21 108.2 357 51.3
GSVIVG01023844001 Vitis vinifera HOM05D006755 ORTHO05D008472 2.1e-21 107.5 291 31.3
FvH4_2g17180 Fragaria vesca HOM05D006755 ORTHO05D008472 3.1e-20 103.6 310 58.4
Haze_01948 Corylus avellana HOM05D006755 ORTHO05D008472 4.0e-20 103.2 192 41.1
RcHm_v2.0_Chr6g0281671 Rosa chinensis HOM05D006755 ORTHO05D008472 9.0e-20 102.1 196 41.8
Hund00104 Selenicereus undatus HOM05D006755 ORTHO05D001720 1.2e-19 101.7 122 52.5
FAN15G2937 Fragaria x ananassa HOM05D006755 ORTHO05D008472 4.5e-19 99.8 314 56.7
MBI01_g31986_MAGBIO Magnolia biondii HOM05D006755 ORTHO05D008472 4.5e-19 99.8 213 68.1
Ah.01g017780 Amaranthus hybridus HOM05D006755 ORTHO05D008472 2.2e-18 97.4 111 47.7
ClCG02G003160 Citrullus lanatus HOM05D006755 ORTHO05D008472 3.8e-18 96.7 336 53.3
FAN27G0618 Fragaria x ananassa HOM05D006755 ORTHO05D008472 6.4e-18 95.9 310 57.4
SEGI_20822 Sequoiadendron giganteum HOM05D006755 ORTHO05D008472 1.2e-16 91.7 279 58.8
Nn6g31556 Nelumbo nucifera HOM05D006755 ORTHO05D008472 2.1e-16 90.9 172 55.8
Sed0025141 Sechium edule HOM05D006755 ORTHO05D008472 3.5e-16 90.1 164 42.1
Lj6P318T4 Lonicera japonica HOM05D006755 ORTHO05D008472 1.2e-11 75.1 36 100.0
Nn5g27913 Nelumbo nucifera HOM05D002804 ORTHO05D003755 2.0e-11 74.3 71 52.1
ATR0693G165 Amborella trichopoda HOM05D002804 ORTHO05D003755 7.6e-11 72.4 85 47.1
TAR636G2693 Trochodendron aralioides HOM05D002804 ORTHO05D003755 2.9e-10 70.5 85 47.1
PSO170G1624 Papaver somniferum HOM05D002804 ORTHO05D003755 6.5e-10 69.3 88 45.5
PSO357G0404 Papaver somniferum HOM05D002804 ORTHO05D003755 8.4e-10 68.9 88 45.5
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 3.2e-09 67.0 71 49.3
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.5e-09 66.2 61 50.8
Manes.04G038100 Manihot esculenta HOM05D002804 ORTHO05D003755 1.6e-08 64.7 67 52.2
Os06g0308200 Oryza sativa ssp. japonica HOM05D002804 ORTHO05D003755 1.6e-08 64.7 71 43.7
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 4.6e-08 63.2 61 49.2
Sabra13G0000100 Salix brachista HOM05D002804 ORTHO05D003755 4.6e-08 63.2 80 45.0
Oeu053880.1 Olea europaea HOM05D043847 ORTHO05D008472 7.9e-08 62.4 43 72.1
Eucgr.B01359 Eucalyptus grandis HOM05D002804 ORTHO05D003755 1.0e-07 62.0 71 45.1
Rhsim11G0111400 Rhododendron simsii HOM05D002962 ORTHO05D003280 1.0e-07 62.0 61 47.5
MD05G1145400 Malus domestica HOM05D006755 ORTHO05D008472 1.8e-07 61.2 35 85.7
Lsat_1_v5_gn_9_84161 Lactuca sativa HOM05D002804 ORTHO05D003755 2.3e-07 60.8 70 44.3
Nn5g27110 Nelumbo nucifera HOM05D006755 ORTHO05D008472 5.1e-07 59.7 146 74.0
PGR119G1767 Punica granatum HOM05D002804 ORTHO05D003755 8.7e-07 58.9 87 40.2
FvH4_6g08960 Fragaria vesca HOM05D002804 ORTHO05D003755 1.1e-06 58.5 108 33.3
AL6G13060 Arabidopsis lyrata HOM05D002804 ORTHO05D003755 1.5e-06 58.2 61 44.3
Lj5g0005878 Lotus japonicus HOM05D002804 ORTHO05D003755 1.5e-06 58.2 83 38.6
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 1.5e-06 58.2 91 38.5
Aqoxy1G02792 Aquilegia oxysepala HOM05D002804 ORTHO05D003755 1.9e-06 57.8 48 52.1
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.5e-06 57.4 130 30.0
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 2.5e-06 57.4 84 36.9
PGSC0003DMG400018230 Solanum tuberosum HOM05D002804 ORTHO05D003755 9.6e-06 55.5 138 30.4


User provided reference genes

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