Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g031960 Solanum pennellii HOM05D000375 ORTHO05D000240 3.9e-84 314.7 154 100.0
Solyc12g096070.2 Solanum lycopersicum HOM05D000375 ORTHO05D000240 1.5e-83 312.8 154 99.4
PGSC0003DMG400029384 Solanum tuberosum HOM05D000375 ORTHO05D000240 3.1e-81 305.1 155 98.1
Nitab4.5_0000943g0150 Nicotiana tabacum HOM05D000375 ORTHO05D000240 5.0e-63 244.6 151 82.1
Nitab4.5_0006741g0010 Nicotiana tabacum HOM05D000375 ORTHO05D000240 2.5e-62 242.3 151 80.8
Sopen08g024600 Solanum pennellii HOM05D000375 ORTHO05D000240 4.6e-56 221.5 155 72.9
PGSC0003DMG400030881 Solanum tuberosum HOM05D000375 ORTHO05D000240 5.9e-56 221.1 155 72.9
Solyc08g075950.3 Solanum lycopersicum HOM05D000375 ORTHO05D000240 5.6e-54 214.5 152 71.7
Nitab4.5_0001033g0050 Nicotiana tabacum HOM05D000375 ORTHO05D000240 2.1e-53 212.6 149 72.5
CAN.G1269.5 Capsicum annuum HOM05D000375 ORTHO05D000240 5.2e-52 208.0 150 71.3
Nitab4.5_0003970g0050 Nicotiana tabacum HOM05D000375 ORTHO05D000240 2.9e-50 202.2 148 70.3
Peaxi162Scf00408g00710 Petunia axillaris HOM05D000375 ORTHO05D000240 3.3e-46 188.7 129 72.1
CAN.G137.32 Capsicum annuum HOM05D000375 ORTHO05D000240 6.8e-44 181.0 152 68.4
PGSC0003DMG400018491 Solanum tuberosum HOM05D000375 ORTHO05D000240 8.3e-42 174.1 152 67.8
Dinv28022 Davidia involucrata HOM05D000375 ORTHO05D000240 1.6e-40 169.9 149 57.0
Nitab4.5_0001424g0060 Nicotiana tabacum HOM05D000375 ORTHO05D000240 3.5e-40 168.7 151 65.6
Oeu059315.1 Olea europaea HOM05D000375 ORTHO05D000240 1.2e-37 160.2 154 59.1
Peaxi162Scf00045g00455 Petunia axillaris HOM05D000375 ORTHO05D000240 1.2e-37 160.2 150 60.7
Sopen08g001470 Solanum pennellii HOM05D000375 ORTHO05D000240 1.1e-36 157.1 155 61.3
Solyc08g005430.3 Solanum lycopersicum HOM05D000375 ORTHO05D000240 3.1e-36 155.6 155 61.9
Oeu042217.2 Olea europaea HOM05D000375 ORTHO05D000240 1.5e-35 153.3 153 53.6
Lj7C161G5 Lonicera japonica HOM05D000375 ORTHO05D000240 1.3e-34 150.2 160 57.5
Lj8C330T4 Lonicera japonica HOM05D000375 ORTHO05D000240 4.1e-33 145.2 155 57.4
SalBow4G0707 Salvia bowleyana HOM05D000375 ORTHO05D000240 4.1e-33 145.2 148 58.1
PSO782G1866 Papaver somniferum HOM05D000375 ORTHO05D000240 2.1e-32 142.9 161 52.8
ECA240G3340 Erigeron canadensis HOM05D000375 ORTHO05D000240 4.6e-32 141.7 155 51.6
PSO063G6301 Papaver somniferum HOM05D000375 ORTHO05D000240 7.8e-32 141.0 159 53.5
MSTRG.11890 Avicennia marina HOM05D000375 ORTHO05D000240 3.9e-31 138.7 150 54.7
Nn1g02115 Nelumbo nucifera HOM05D000375 ORTHO05D000240 1.2e-29 133.7 157 49.7
TAR629G1540 Trochodendron aralioides HOM05D000375 ORTHO05D000240 2.8e-29 132.5 154 50.0
Aqoxy3G01897 Aquilegia oxysepala HOM05D000375 ORTHO05D000240 8.9e-28 127.5 153 45.8
Hma1.2p1_1179F.1_g264560 Hydrangea macrophylla HOM05D000375 ORTHO05D000240 8.9e-28 127.5 152 48.0
MSTRG.1777 Avicennia marina HOM05D000375 ORTHO05D000240 2.6e-27 125.9 155 49.0
DCAR_008187 Daucus carota HOM05D000375 ORTHO05D000240 3.4e-27 125.6 143 48.3
Nitab4.5_0005880g0050 Nicotiana tabacum HOM05D000375 ORTHO05D000240 4.4e-27 125.2 141 53.2
DCAR_024949 Daucus carota HOM05D000375 ORTHO05D000240 5.8e-27 124.8 152 46.1
Actinidia14749 Actinidia chinensis HOM05D000375 ORTHO05D000240 7.6e-27 124.4 152 49.3
HanXRQChr13g0405031 Helianthus annuus HOM05D000375 ORTHO05D000240 7.6e-27 124.4 156 46.8
MSTRG.25719 Avicennia marina HOM05D000375 ORTHO05D000240 9.9e-27 124.0 157 47.8
Actinidia18155 Actinidia chinensis HOM05D000375 ORTHO05D000240 1.7e-26 123.2 150 47.3
CSS0005525 Camellia sinensis var. sinensis HOM05D000375 ORTHO05D000240 2.2e-26 122.9 152 43.4
HanXRQChr03g0082181 Helianthus annuus HOM05D000375 ORTHO05D000240 2.2e-26 122.9 157 45.9
ATR0829G215 Amborella trichopoda HOM05D000375 ORTHO05D000240 2.9e-26 122.5 157 44.6
SalBow8G5453 Salvia bowleyana HOM05D000375 ORTHO05D000240 8.4e-26 120.9 150 48.0
CSS0047007 Camellia sinensis var. sinensis HOM05D000375 ORTHO05D000240 4.2e-25 118.6 149 42.3
unitig_747.g21926 Utricularia gibba HOM05D000375 ORTHO05D000240 5.4e-25 118.2 154 47.4
QL09p020729 Quercus lobata HOM05D000375 ORTHO05D000240 9.3e-25 117.5 149 46.3
Migut.E01342 Erythranthe guttata HOM05D000375 ORTHO05D000240 1.2e-24 117.1 163 47.9
GSVIVG01024326001 Vitis vinifera HOM05D000375 ORTHO05D000240 1.2e-24 117.1 149 47.0
CSS0033888 Camellia sinensis var. sinensis HOM05D000375 ORTHO05D000240 1.6e-24 116.7 150 42.7
CiPaw.05G212700 Carya illinoinensis HOM05D000375 ORTHO05D000240 7.8e-24 114.4 149 45.6
Dinv29125 Davidia involucrata HOM05D000375 ORTHO05D000240 7.8e-24 114.4 148 46.6
Cpa.g.sc43.137 Carica papaya HOM05D000375 ORTHO05D000240 3.9e-23 112.1 150 46.0
Ciclev10032065m.g Citrus clementina HOM05D000375 ORTHO05D000240 1.5e-22 110.2 149 45.6
CDE11G0058 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 1.9e-22 109.8 151 42.4
CiPaw.06G036100 Carya illinoinensis HOM05D000375 ORTHO05D000240 3.3e-22 109.0 146 43.8
Haze_00370 Corylus avellana HOM05D000375 ORTHO05D000240 3.3e-22 109.0 148 45.9
CDE04G3543 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 4.3e-22 108.6 151 44.4
Thecc.05G222800 Theobroma cacao HOM05D000375 ORTHO05D000240 9.6e-22 107.5 151 43.7
CsaV3_2G035970 Cucumis sativus L. HOM05D000375 ORTHO05D000240 1.6e-21 106.7 149 42.3
Sed0008187 Sechium edule HOM05D000375 ORTHO05D000240 2.1e-21 106.3 151 40.4
Prupe.5G021400 Prunus persica HOM05D000375 ORTHO05D000240 3.6e-21 105.5 150 43.3
RcHm_v2.0_Chr1g0384601 Rosa chinensis HOM05D000375 ORTHO05D000240 3.6e-21 105.5 146 42.5
Ca_30884_v3 Cicer arietinum L. HOM05D000375 ORTHO05D000240 4.8e-21 105.1 152 40.1
ClCG02G007720 Citrullus lanatus HOM05D000375 ORTHO05D000240 4.8e-21 105.1 148 41.9
MELO3C024739.2 Cucumis melo HOM05D000375 ORTHO05D000240 8.1e-21 104.4 148 41.9
CDE02G1805 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 1.1e-20 104.0 150 40.7
COL.COLO4_15135 Corchorus olitorius HOM05D000375 ORTHO05D000240 1.1e-20 104.0 152 41.4
Potri.013G077500 Populus trichocarpa HOM05D000375 ORTHO05D000240 1.1e-20 104.0 152 40.8
Ca_19983_v3 Cicer arietinum L. HOM05D000375 ORTHO05D000240 2.4e-20 102.8 151 39.7
Gohir.D03G054900 Gossypium hirsutum HOM05D000375 ORTHO05D000240 2.4e-20 102.8 148 43.2
TPR.G9838 Trifolium pratense HOM05D000375 ORTHO05D000240 2.4e-20 102.8 153 41.8
Os06g0116200 Oryza sativa ssp. japonica HOM05D000375 ORTHO05D000240 3.1e-20 102.4 139 43.2
Gorai.003G057700 Gossypium raimondii HOM05D000375 ORTHO05D000240 4.0e-20 102.1 148 43.2
Potri.003G100800 Populus trichocarpa HOM05D000375 ORTHO05D000240 5.3e-20 101.7 154 42.2
HPP92_025936 Vanilla planifolia HOM05D000375 ORTHO05D000240 5.3e-20 101.7 152 42.1
Sed0015644 Sechium edule HOM05D000375 ORTHO05D000240 6.9e-20 101.3 147 41.5
Manes.08G160800 Manihot esculenta HOM05D000375 ORTHO05D000240 9.0e-20 100.9 152 40.8
Potri.001G132600 Populus trichocarpa HOM05D000375 ORTHO05D000240 9.0e-20 100.9 153 42.5
Atru.chr12.1872 Acer truncatum HOM05D000375 ORTHO05D000240 2.0e-19 99.8 148 45.9
FAN10G1755 Fragaria x ananassa HOM05D000375 ORTHO05D000240 2.0e-19 99.8 149 40.9
Lj3g0001039 Lotus japonicus HOM05D000375 ORTHO05D000240 2.0e-19 99.8 152 40.1
TWI60G1010 Tripterygium wilfordii HOM05D000375 ORTHO05D000240 2.0e-19 99.8 147 42.9
Duzib177G0248 Durio zibethinus HOM05D000375 ORTHO05D000240 2.6e-19 99.4 151 41.7
TWI32G1125 Tripterygium wilfordii HOM05D000375 ORTHO05D000240 3.4e-19 99.0 148 41.9
HPP92_003429 Vanilla planifolia HOM05D000375 ORTHO05D000240 3.4e-19 99.0 154 39.0
FAN03G3075 Fragaria x ananassa HOM05D000375 ORTHO05D000240 4.4e-19 98.6 148 40.5
Gohir.A02G125800 Gossypium hirsutum HOM05D000375 ORTHO05D000240 4.4e-19 98.6 139 44.6
Migut.A00569 Erythranthe guttata HOM05D000375 ORTHO05D000240 5.8e-19 98.2 158 47.5
FvH4_7g34250 Fragaria vesca HOM05D000375 ORTHO05D000240 5.8e-19 98.2 149 39.6
Medtr0001s0490 Medicago truncatula HOM05D000375 ORTHO05D000240 5.8e-19 98.2 153 39.9
AUR62028212 Chenopodium quinoa HOM05D000375 ORTHO05D000240 9.9e-19 97.4 149 40.9
SGA_v2.0_scaffold96G29055 Striga asiatica HOM05D000375 ORTHO05D000240 9.9e-19 97.4 154 44.8
AUR62002094 Chenopodium quinoa HOM05D000375 ORTHO05D000240 1.3e-18 97.1 139 40.3
FAN01G2079 Fragaria x ananassa HOM05D000375 ORTHO05D000240 1.3e-18 97.1 148 39.9
Sabra03G0068700 Salix brachista HOM05D000375 ORTHO05D000240 1.7e-18 96.7 151 41.1
TWI34G0764 Tripterygium wilfordii HOM05D000375 ORTHO05D000240 1.7e-18 96.7 150 40.0
Psat7g155280 Pisum sativum HOM05D000375 ORTHO05D000240 2.2e-18 96.3 153 40.5
unitig_0.g2836 Utricularia gibba HOM05D000375 ORTHO05D000240 2.2e-18 96.3 150 44.7
Sabra13G0066200 Salix brachista HOM05D000375 ORTHO05D000240 4.9e-18 95.1 149 40.9
Rhsim07G0138200 Rhododendron simsii HOM05D000375 ORTHO05D000240 6.4e-18 94.7 150 41.3
Manes.09G129700 Manihot esculenta HOM05D000375 ORTHO05D000240 1.1e-17 94.0 149 40.3
Gohir.A13G157400 Gossypium hirsutum HOM05D000375 ORTHO05D000240 1.4e-17 93.6 149 40.9
Gohir.D13G162200 Gossypium hirsutum HOM05D000375 ORTHO05D000240 1.4e-17 93.6 103 50.5
Gorai.013G184200 Gossypium raimondii HOM05D000375 ORTHO05D000240 1.4e-17 93.6 103 50.5
Atru.chr6.1499 Acer truncatum HOM05D000375 ORTHO05D000240 1.9e-17 93.2 150 38.7
FvH4_5g23900 Fragaria vesca HOM05D000375 ORTHO05D000240 1.9e-17 93.2 139 38.1
FAN08G2178 Fragaria x ananassa HOM05D000375 ORTHO05D000240 1.9e-17 93.2 139 38.1
FAN18G0915 Fragaria x ananassa HOM05D000375 ORTHO05D000240 1.9e-17 93.2 139 38.1
FAN13G0427 Fragaria x ananassa HOM05D000375 ORTHO05D000240 3.2e-17 92.4 139 37.4
FAN18G1016 Fragaria x ananassa HOM05D000375 ORTHO05D000240 3.2e-17 92.4 139 37.4
Sabra01G0102300 Salix brachista HOM05D000375 ORTHO05D000240 4.2e-17 92.0 149 39.6
RcHm_v2.0_Chr7g0213331 Rosa chinensis HOM05D000375 ORTHO05D000240 5.4e-17 91.7 139 39.6
Phvul.002G041800 Phaseolus vulgaris HOM05D000375 ORTHO05D000240 9.3e-17 90.9 85 55.3
Zm00001eb378820 Zea mays HOM05D000375 ORTHO05D000240 9.3e-17 90.9 144 38.9
Glyma.11G110700 Glycine max HOM05D000375 ORTHO05D000240 4.6e-16 88.6 151 39.1
vmacro14230 Vaccinium macrocarpon HOM05D000375 ORTHO05D000240 1.3e-15 87.0 150 38.0
FAN04G1947 Fragaria x ananassa HOM05D000375 ORTHO05D000240 1.7e-15 86.7 139 38.1
Glyma.12G014700 Glycine max HOM05D000375 ORTHO05D000240 3.0e-15 85.9 152 38.2
Potri.019G042300 Populus trichocarpa HOM05D000375 ORTHO05D000240 3.0e-15 85.9 152 39.5
Os02g0701300 Oryza sativa ssp. japonica HOM05D000375 ORTHO05D000240 3.9e-15 85.5 145 37.9
TAR636G1015 Trochodendron aralioides HOM05D000375 ORTHO05D000240 5.1e-15 85.1 161 39.1
CSS0048488 Camellia sinensis var. sinensis HOM05D000375 ORTHO05D000240 1.9e-14 83.2 149 36.9
MD00G1001000 Malus domestica HOM05D000375 ORTHO05D000240 1.9e-14 83.2 149 36.2
Glyma.11G008500 Glycine max HOM05D000375 ORTHO05D000240 2.5e-14 82.8 85 52.9
Nn6g35612 Nelumbo nucifera HOM05D000375 ORTHO05D000240 4.3e-14 82.0 161 37.9
VMungo1127G1810 Vigna mungo HOM05D000375 ORTHO05D000240 5.6e-14 81.6 152 38.2
CSS0024801 Camellia sinensis var. sinensis HOM05D000375 ORTHO05D000240 9.6e-14 80.9 149 36.2
Glyma.01G234400 Glycine max HOM05D000375 ORTHO05D000240 9.6e-14 80.9 84 52.4
Os04g0600900 Oryza sativa ssp. japonica HOM05D000375 ORTHO05D000240 9.6e-14 80.9 136 40.4
MD06G1014700 Malus domestica HOM05D000375 ORTHO05D000240 1.3e-13 80.5 152 34.9
Nitab4.5_0001356g0030 Nicotiana tabacum HOM05D000375 ORTHO05D000240 1.3e-13 80.5 89 55.1
Lsat_1_v5_gn_6_75441 Lactuca sativa HOM05D000375 ORTHO05D000240 3.6e-13 79.0 131 35.1
Phvul.011G017700 Phaseolus vulgaris HOM05D000375 ORTHO05D000240 8.1e-13 77.8 152 38.2
TAR624G0216 Trochodendron aralioides HOM05D000375 ORTHO05D000240 1.8e-12 76.6 162 37.0
THA.LOC104823827 Tarenaya hassleriana HOM05D000375 ORTHO05D000240 9.0e-12 74.3 92 43.5
TWI34G0526 Tripterygium wilfordii HOM05D000375 ORTHO05D000240 9.0e-12 74.3 130 36.9
Ciclev10001613m.g Citrus clementina HOM05D000375 ORTHO05D000240 2.6e-11 72.8 141 33.3
THA.LOC104805653 Tarenaya hassleriana HOM05D000375 ORTHO05D000240 5.8e-11 71.6 74 51.4
Zm00001eb071830 Zea mays HOM05D000375 ORTHO05D000240 7.6e-11 71.2 137 39.4
Lalb_Chr09g0320071 Lupinus albus HOM05D000375 ORTHO05D000240 1.7e-10 70.1 75 53.3
Mapoly1350s0001 Marchantia polymorpha HOM05D000375 ORTHO05D000240 2.2e-10 69.7 171 31.6
Zm00001eb430300 Zea mays HOM05D000375 ORTHO05D000240 2.2e-10 69.7 70 54.3
Haze_25987 Corylus avellana HOM05D000375 ORTHO05D000240 4.9e-10 68.6 161 34.8
Haze_25995 Corylus avellana HOM05D000375 ORTHO05D000240 4.9e-10 68.6 161 34.8
Thecc.09G078900 Theobroma cacao HOM05D000375 ORTHO05D000240 1.1e-09 67.4 160 35.6
Ah.13g072380 Amaranthus hybridus HOM05D000375 ORTHO05D000240 1.4e-09 67.0 149 34.2
Aqoxy7G01054 Aquilegia oxysepala HOM05D000375 ORTHO05D000240 1.9e-09 66.6 157 36.3
Gohir.A05G033300 Gossypium hirsutum HOM05D000375 ORTHO05D000240 3.2e-09 65.9 152 32.2
Gohir.D05G034800 Gossypium hirsutum HOM05D000375 ORTHO05D000240 3.2e-09 65.9 152 32.2
Nn8g38673 Nelumbo nucifera HOM05D000375 ORTHO05D000240 5.5e-09 65.1 161 34.8
Duzib168G0891 Durio zibethinus HOM05D000375 ORTHO05D000240 7.1e-09 64.7 157 33.8
Gorai.009G035200 Gossypium raimondii HOM05D000375 ORTHO05D000240 1.2e-08 63.9 149 31.5
Zm00001eb251820 Zea mays HOM05D000375 ORTHO05D000240 1.6e-08 63.5 77 46.8
Glyma.17G050200 Glycine max HOM05D000375 ORTHO05D000240 3.5e-08 62.4 164 35.4
arahy.Tifrunner.gnm1.ann1.AFHS7R Arachis hypogaea HOM05D000375 ORTHO05D000240 4.6e-08 62.0 82 41.5
arahy.Tifrunner.gnm1.ann1.BWV8RN Arachis hypogaea HOM05D000375 ORTHO05D000240 6.0e-08 61.6 82 41.5
EL10Ac3g05042 Beta vulgaris HOM05D000375 ORTHO05D000240 1.0e-07 60.8 107 30.8
Medtr4g125490 Medicago truncatula HOM05D000375 ORTHO05D000240 1.0e-07 60.8 151 35.8
Glyma.13G109500 Glycine max HOM05D000375 ORTHO05D000240 1.3e-07 60.5 162 33.3
Duzib150G0260 Durio zibethinus HOM05D000375 ORTHO05D000240 1.8e-07 60.1 150 31.3
MD00G1142400 Malus domestica HOM05D000375 ORTHO05D000240 3.0e-07 59.3 144 31.9
CDE05G0834 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 3.9e-07 58.9 77 44.2
MD15G1216000 Malus domestica HOM05D000375 ORTHO05D000240 3.9e-07 58.9 144 30.6
VMungo1215G0942 Vigna mungo HOM05D000375 ORTHO05D000240 3.9e-07 58.9 163 34.4
COL.COLO4_18110 Corchorus olitorius HOM05D000375 ORTHO05D000240 5.1e-07 58.5 146 34.9
Manes.16G096400 Manihot esculenta HOM05D000375 ORTHO05D000240 5.1e-07 58.5 159 32.1
CiPaw.04G144300 Carya illinoinensis HOM05D000375 ORTHO05D000240 6.7e-07 58.2 160 31.9
GSVIVG01015095001 Vitis vinifera HOM05D000375 ORTHO05D000240 8.7e-07 57.8 155 31.0
Atru.chr7.1694 Acer truncatum HOM05D000375 ORTHO05D000240 1.1e-06 57.4 152 33.6
Phvul.003G131800 Phaseolus vulgaris HOM05D000375 ORTHO05D000240 1.5e-06 57.0 159 33.3
Actinidia33616 Actinidia chinensis HOM05D000375 ORTHO05D000240 1.9e-06 56.6 102 35.3
Manes.03G039500 Manihot esculenta HOM05D000375 ORTHO05D000240 3.3e-06 55.8 143 31.5


User provided reference genes

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