Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g031750 Solanum pennellii HOM05D005974 ORTHO05D007201 7.0e-237 823.5 412 100.0
Solyc12g095850.2 Solanum lycopersicum HOM05D005974 ORTHO05D007201 6.1e-233 810.4 412 99.0
Nitab4.5_0001309g0090 Nicotiana tabacum HOM05D005974 ORTHO05D007201 5.4e-213 744.2 415 89.9
CAN.G208.66 Capsicum annuum HOM05D005974 ORTHO05D007201 3.3e-210 734.9 414 89.9
Migut.E01538 Erythranthe guttata HOM05D005974 ORTHO05D007201 1.2e-191 673.3 416 80.5
MSTRG.14030 Avicennia marina HOM05D005974 ORTHO05D007201 1.4e-189 666.4 416 80.3
GSVIVG01035293001 Vitis vinifera HOM05D005974 ORTHO05D007201 2.4e-189 665.6 418 79.7
COL.COLO4_20996 Corchorus olitorius HOM05D005974 ORTHO05D007201 5.4e-189 664.5 418 81.1
Oeu006965.1 Olea europaea HOM05D005974 ORTHO05D007201 1.6e-188 662.9 411 80.3
Nitab4.5_0001737g0060 Nicotiana tabacum HOM05D005974 ORTHO05D007201 3.9e-187 658.3 419 82.3
Dinv23389 Davidia involucrata HOM05D005974 ORTHO05D007201 5.1e-187 657.9 417 79.4
HanXRQChr17g0539061 Helianthus annuus HOM05D005974 ORTHO05D007201 6.6e-187 657.5 414 80.0
Manes.03G060100 Manihot esculenta HOM05D005974 ORTHO05D007201 8.7e-187 657.1 414 80.0
Ciclev10010686m.g Citrus clementina HOM05D005974 ORTHO05D007201 1.5e-186 656.4 421 78.6
Gorai.010G105000 Gossypium raimondii HOM05D005974 ORTHO05D007201 1.5e-186 656.4 417 79.6
Gohir.D06G091000 Gossypium hirsutum HOM05D005974 ORTHO05D007201 3.3e-186 655.2 418 79.4
Cc08_g09880 Coffea canephora HOM05D005974 ORTHO05D007201 9.6e-186 653.7 408 80.9
PGR044G0481 Punica granatum HOM05D005974 ORTHO05D007201 2.1e-185 652.5 419 79.5
SGA_v2.0_scaffold169G38660 Striga asiatica HOM05D005974 ORTHO05D007201 3.6e-185 651.7 416 78.1
Lsat_1_v5_gn_3_25800 Lactuca sativa HOM05D005974 ORTHO05D007201 4.8e-185 651.4 414 79.2
Gohir.A06G091700 Gossypium hirsutum HOM05D005974 ORTHO05D007201 1.1e-184 650.2 418 79.2
CiPaw.08G027100 Carya illinoinensis HOM05D005974 ORTHO05D007201 1.4e-184 649.8 419 78.5
Thecc.09G047600 Theobroma cacao HOM05D005974 ORTHO05D007201 3.1e-184 648.7 415 78.6
HanXRQChr06g0174221 Helianthus annuus HOM05D005974 ORTHO05D007201 4.0e-184 648.3 418 78.7
CsaV3_3G048470 Cucumis sativus L. HOM05D005974 ORTHO05D007201 6.9e-184 647.5 416 78.6
FvH4_2g35300 Fragaria vesca HOM05D005974 ORTHO05D007201 6.9e-184 647.5 420 76.7
Cpa.g.sc7.214 Carica papaya HOM05D005974 ORTHO05D007201 1.2e-183 646.7 414 77.5
RcHm_v2.0_Chr6g0306611 Rosa chinensis HOM05D005974 ORTHO05D007201 2.0e-183 646.0 422 77.0
FAN27G3236 Fragaria x ananassa HOM05D005974 ORTHO05D007201 3.4e-183 645.2 420 76.9
TWI63G1635 Tripterygium wilfordii HOM05D005974 ORTHO05D007201 4.5e-183 644.8 418 78.2
SalBow1G5620 Salvia bowleyana HOM05D005974 ORTHO05D007201 5.8e-183 644.4 445 74.4
CSS0034694 Camellia sinensis var. sinensis HOM05D005974 ORTHO05D007201 9.9e-183 643.7 413 78.0
FAN20G0082 Fragaria x ananassa HOM05D005974 ORTHO05D007201 1.3e-182 643.3 422 76.5
Eucgr.C02982 Eucalyptus grandis HOM05D005974 ORTHO05D007201 2.2e-182 642.5 412 78.9
PGR044G1757 Punica granatum HOM05D005974 ORTHO05D007201 8.4e-182 640.6 417 78.4
MELO3C003472.2 Cucumis melo HOM05D005974 ORTHO05D007201 1.1e-181 640.2 425 76.9
FAN15G0062 Fragaria x ananassa HOM05D005974 ORTHO05D007201 1.1e-181 640.2 422 76.3
Potri.003G158000 Populus trichocarpa HOM05D005974 ORTHO05D007201 1.4e-181 639.8 416 77.4
ECA246G2549 Erigeron canadensis HOM05D005974 ORTHO05D007201 1.9e-181 639.4 416 77.6
Atru.chr7.2057 Acer truncatum HOM05D005974 ORTHO05D007201 5.4e-181 637.9 418 78.0
MD15G1090800 Malus domestica HOM05D005974 ORTHO05D007201 5.4e-181 637.9 419 77.6
CANSAT80G2257 Cannabis sativa HOM05D005974 ORTHO05D007201 1.2e-180 636.7 414 78.0
Actinidia30286 Actinidia chinensis HOM05D005974 ORTHO05D007201 2.1e-180 636.0 419 76.4
arahy.Tifrunner.gnm1.ann1.CL6SAC Arachis hypogaea HOM05D005974 ORTHO05D007201 3.9e-179 631.7 364 84.3
Sc09g0009450 Simmondsia chinensis HOM05D005974 ORTHO05D007201 6.7e-179 630.9 360 85.0
PSO832G2350 Papaver somniferum HOM05D005974 ORTHO05D007201 8.7e-179 630.6 422 74.4
EL10Ac5g11988 Beta vulgaris HOM05D005974 ORTHO05D007201 4.3e-178 628.2 413 77.0
Rhsim02G0175300 Rhododendron simsii HOM05D005974 ORTHO05D007201 1.3e-177 626.7 420 75.7
Glyma.06G088000 Glycine max HOM05D005974 ORTHO05D007201 5.3e-176 621.3 407 75.9
Lalb_Chr08g0242951 Lupinus albus HOM05D005974 ORTHO05D007201 5.3e-176 621.3 363 82.1
Sabra03G0114600 Salix brachista HOM05D005974 ORTHO05D007201 6.9e-176 620.9 388 79.4
ClCG11G015070 Citrullus lanatus HOM05D005974 ORTHO05D007201 1.5e-175 619.8 357 86.0
Aqoxy7G01418 Aquilegia oxysepala HOM05D005974 ORTHO05D007201 2.0e-175 619.4 436 72.9
Glyma.04G086500 Glycine max HOM05D005974 ORTHO05D007201 4.5e-175 618.2 407 76.4
PSO063G5342 Papaver somniferum HOM05D005974 ORTHO05D007201 1.3e-174 616.7 422 73.2
Peaxi162Scf00064g01533 Petunia axillaris HOM05D005974 ORTHO05D007201 2.5e-173 612.5 412 78.4
TPR.G12488 Trifolium pratense HOM05D005974 ORTHO05D007201 9.3e-173 610.5 408 73.0
Medtr3g110360 Medicago truncatula HOM05D005974 ORTHO05D007201 1.2e-172 610.1 404 74.3
Phvul.009G111700 Phaseolus vulgaris HOM05D005974 ORTHO05D007201 2.1e-172 609.4 343 85.4
Lj1g0014442 Lotus japonicus HOM05D005974 ORTHO05D007201 2.7e-172 609.0 406 74.1
Ca_15573_v3 Cicer arietinum L. HOM05D005974 ORTHO05D007201 6.7e-171 604.4 408 74.3
AUR62018617 Chenopodium quinoa HOM05D005974 ORTHO05D007201 8.7e-171 604.0 343 84.8
THA.LOC104803747 Tarenaya hassleriana HOM05D005974 ORTHO05D007201 3.3e-170 602.1 423 72.1
Dinv27921 Davidia involucrata HOM05D005974 ORTHO05D007201 1.1e-168 597.0 417 73.1
ATR0705G128 Amborella trichopoda HOM05D005974 ORTHO05D007201 1.2e-167 593.6 402 74.1
Os01g0743400 Oryza sativa ssp. japonica HOM05D005974 ORTHO05D007201 6.5e-166 587.8 413 73.1
TAR624G1429 Trochodendron aralioides HOM05D005974 ORTHO05D007201 6.5e-166 587.8 347 83.0
A03p15570 Brassica napus HOM05D005974 ORTHO05D007201 9.3e-165 583.9 399 72.9
BcaC01g06194 Brassica carinata HOM05D005974 ORTHO05D007201 2.7e-164 582.4 390 73.6
BolC3t14221H Brassica oleracea HOM05D005974 ORTHO05D007201 2.7e-164 582.4 390 73.6
Sp4g05700 Schrenkiella parvula HOM05D005974 ORTHO05D007201 4.6e-164 581.6 366 76.5
BcaB01g04210 Brassica carinata HOM05D005974 ORTHO05D007201 1.3e-163 580.1 378 74.6
QL12p041028 Quercus lobata HOM05D005974 ORTHO05D007201 1.3e-163 580.1 370 79.7
C04p55740 Brassica napus HOM05D005974 ORTHO05D007201 3.9e-163 578.6 363 77.1
A04p20060 Brassica napus HOM05D005974 ORTHO05D007201 5.1e-163 578.2 363 77.1
BraA04t17588Z Brassica rapa HOM05D005974 ORTHO05D007201 5.1e-163 578.2 363 77.1
C03p18200 Brassica napus HOM05D005974 ORTHO05D007201 5.7e-162 574.7 357 77.6
BolC4t27100H Brassica oleracea HOM05D005974 ORTHO05D007201 1.3e-161 573.5 363 76.6
AL4G17680 Arabidopsis lyrata HOM05D005974 ORTHO05D007201 5.3e-160 568.2 406 68.7
CARHR115390 Cardamine hirsuta HOM05D005974 ORTHO05D007201 1.5e-159 566.6 415 68.7
BraA03t10849Z Brassica rapa HOM05D005974 ORTHO05D007201 2.0e-159 566.2 362 76.0
Carub.0004s0567 Capsella rubella HOM05D005974 ORTHO05D007201 3.4e-159 565.5 349 76.8
Thhalv10002006m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 5.9e-159 564.7 385 73.0
AT2G25840 Arabidopsis thaliana HOM05D005974 ORTHO05D007201 7.7e-159 564.3 406 68.5
arahy.Tifrunner.gnm1.ann1.I5HST9 Arachis hypogaea HOM05D005974 ORTHO05D007201 3.8e-158 562.0 364 78.0
Thhalv10002003m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 3.8e-158 562.0 347 77.2
Lj8C569G5 Lonicera japonica HOM05D000602 ORTHO05D001147 1.9e-157 559.7 392 71.9
MBI04_g20303_MAGBIO Magnolia biondii HOM05D005974 ORTHO05D007201 2.5e-157 559.3 415 70.6
CDE02G2857 Ceratophyllum demersum HOM05D005974 ORTHO05D007201 1.2e-156 557.0 318 84.0
BcaB06g29640 Brassica carinata HOM05D005974 ORTHO05D007201 1.8e-152 543.1 363 73.6
AagrBONN_evm.TU.Sc2ySwM_344.1805 Anthoceros agrestis HOM05D005974 ORTHO05D007201 2.4e-152 542.7 356 73.3
Psat5g020640 Pisum sativum HOM05D005974 ORTHO05D007201 4.1e-152 542.0 364 72.8
Aa31LG5G9820 Aethionema arabicum HOM05D005974 ORTHO05D007201 9.1e-152 540.8 377 71.6
DCAR_018521 Daucus carota HOM05D005974 ORTHO05D007201 5.9e-151 538.1 299 87.3
HPP92_024453 Vanilla planifolia HOM05D005974 ORTHO05D007201 5.5e-149 531.6 418 66.7
Mapoly0137s0001 Marchantia polymorpha HOM05D005974 ORTHO05D007201 1.0e-147 527.3 421 63.2
Sed0012339 Sechium edule HOM05D005974 ORTHO05D007201 5.1e-147 525.0 339 78.5
Pp3c13_12220 Physcomitrium patens HOM05D005974 ORTHO05D007201 1.1e-144 517.3 366 68.6
AUR62007372 Chenopodium quinoa HOM05D005974 ORTHO05D007201 2.4e-144 516.2 375 69.6
Duzib187G1338 Durio zibethinus HOM05D005974 ORTHO05D007201 9.1e-144 514.2 405 69.1
SMO116G0397 Selaginella moellendorffii HOM05D005974 ORTHO05D007201 2.5e-141 506.1 350 70.6
vmacro11047 Vaccinium macrocarpon HOM05D005974 ORTHO05D007201 1.1e-138 497.3 437 62.0
Nn7g37050 Nelumbo nucifera HOM05D005974 ORTHO05D007201 3.7e-137 492.3 412 62.1
SGA_v2.0_scaffold163G38058 Striga asiatica HOM05D005974 ORTHO05D007201 4.8e-137 491.9 345 72.2
VMungo1309G1913 Vigna mungo HOM05D005974 ORTHO05D007201 3.1e-136 489.2 269 88.1
PRCOL_00006768 Prasinoderma coloniale HOM05D005974 ORTHO05D007201 7.7e-127 458.0 341 65.1
MCO14G391 Micromonas commoda HOM05D005974 ORTHO05D007201 1.2e-122 444.1 374 58.8
Cre05.g238322 Chlamydomonas reinhardtii HOM05D005974 ORTHO05D007201 5.7e-122 441.8 360 60.8
Hund14385 Selenicereus undatus HOM05D005974 ORTHO05D007201 9.8e-122 441.0 254 82.7
Prupe.1G445200 Prunus persica HOM05D005974 ORTHO05D007201 2.4e-120 436.4 300 75.0
Gohir.D06G090920 Gossypium hirsutum HOM05D005974 ORTHO05D007201 1.1e-104 384.4 213 87.3
HanXRQChr06g0174211 Helianthus annuus HOM05D005974 ORTHO05D007201 5.8e-98 362.1 203 84.7
Zm00001eb153590 Zea mays HOM05D005974 ORTHO05D007201 1.6e-92 344.0 204 83.8
BcaB06g29641 Brassica carinata HOM05D005974 ORTHO05D007201 8.6e-86 321.6 211 76.3
CBR_g26161 Chara braunii HOM05D005974 ORTHO05D007201 1.3e-76 291.2 204 67.2
Haze_27433 Corylus avellana HOM05D005974 ORTHO05D007201 4.9e-65 252.7 274 48.5
Cfa024571 Carpinus fangiana HOM05D005974 ORTHO05D007201 9.0e-51 205.3 365 35.9
Haze_21915 Corylus avellana HOM05D005974 ORTHO05D007201 7.2e-48 195.7 123 82.9
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 2.7e-47 193.7 117 76.1
Ah.07g201090 Amaranthus hybridus HOM05D005974 ORTHO05D007201 7.7e-42 175.6 246 43.9
SEGI_31887 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 2.4e-35 154.1 101 70.3
SEGI_40033 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 6.1e-31 139.4 85 74.1
Lsat_1_v5_gn_9_95260 Lactuca sativa HOM05D005974 ORTHO05D007201 2.3e-30 137.5 165 46.7
CDE08G1286 Ceratophyllum demersum HOM05D000581 ORTHO05D000412 6.3e-28 129.4 88 71.6
VMungo1309G1904 Vigna mungo HOM05D005974 ORTHO05D007201 1.8e-27 127.9 74 77.0
Hund30885 Selenicereus undatus HOM05D005974 ORTHO05D007201 7.0e-27 125.9 120 56.7
Hund30611 Selenicereus undatus HOM05D005974 ORTHO05D007201 1.6e-26 124.8 120 55.8
Gohir.A05G045550 Gossypium hirsutum HOM05D005974 ORTHO05D007201 1.7e-17 94.7 74 68.9
Gohir.D06G090940 Gossypium hirsutum HOM05D005974 ORTHO05D007201 3.0e-14 84.0 46 82.6
arahy.Tifrunner.gnm1.ann1.05PEK3 Arachis hypogaea HOM05D005974 ORTHO05D038942 4.0e-14 83.6 100 45.0
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 6.3e-12 76.3 109 46.8
arahy.Tifrunner.gnm1.ann1.8YH8YH Arachis hypogaea HOM05D005974 ORTHO05D007201 3.5e-10 70.5 93 44.1
TAR383G0536 Trochodendron aralioides HOM05D005974 ORTHO05D007201 6.5e-09 66.2 48 62.5
CBR_g26165 Chara braunii HOM05D005974 ORTHO05D007201 7.2e-08 62.8 58 53.4
FvH4_5g31180 Fragaria vesca HOM05D000076 ORTHO05D005802 5.2e-06 56.6 61 50.8


User provided reference genes

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