Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 8.1e-302 1039.6 534 100.0
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 1.8e-301 1038.5 534 99.8
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 6.0e-265 917.1 499 90.2
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 8.2e-262 906.7 543 86.6
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 4.9e-259 897.5 537 86.6
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 2.5e-250 868.6 538 84.6
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 7.8e-204 714.1 548 67.7
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 1.3e-198 696.8 545 65.1
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 4.6e-196 688.3 544 66.7
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 4.7e-193 678.3 536 66.2
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 3.4e-191 672.2 548 63.5
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 7.5e-191 671.0 541 63.4
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 1.1e-189 667.2 543 64.3
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 6.0e-188 661.4 540 63.5
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 2.3e-187 659.4 540 64.6
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 5.0e-187 658.3 554 63.9
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 2.1e-185 652.9 550 63.8
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 1.8e-184 649.8 552 61.6
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 8.9e-184 647.5 546 61.7
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 1.2e-183 647.1 558 61.8
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 1.2e-183 647.1 547 61.6
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 1.5e-183 646.7 542 62.5
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 2.6e-183 646.0 539 61.6
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 7.5e-183 644.4 542 64.2
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 1.3e-182 643.7 549 60.8
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 3.7e-182 642.1 599 59.1
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 1.9e-181 639.8 558 60.8
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 1.6e-180 636.7 544 61.2
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 2.1e-180 636.3 547 62.3
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 2.1e-180 636.3 539 60.5
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 1.1e-178 630.6 544 59.9
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 2.8e-177 625.9 538 62.3
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 1.4e-176 623.6 544 60.5
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 3.1e-176 622.5 539 60.3
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 4.0e-176 622.1 540 62.0
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 4.4e-175 618.6 538 62.1
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 4.9e-174 615.1 549 59.4
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 6.4e-174 614.8 552 59.2
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 9.2e-173 610.9 558 58.1
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 2.1e-172 609.8 550 59.5
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 4.6e-172 608.6 571 59.5
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 1.0e-171 607.4 548 58.2
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 3.0e-171 605.9 564 61.7
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 5.1e-171 605.1 541 59.7
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 8.1e-169 597.8 551 57.5
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 1.8e-168 596.7 545 57.6
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 4.4e-167 592.0 552 57.2
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 7.6e-167 591.3 557 58.9
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 1.7e-166 590.1 547 56.9
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 2.9e-166 589.3 465 62.2
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 6.4e-166 588.2 555 57.7
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 1.9e-165 586.6 556 56.1
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 2.4e-165 586.3 548 56.4
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 3.2e-165 585.9 547 57.4
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 3.2e-165 585.9 549 57.6
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 3.2e-165 585.9 554 57.2
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 2.7e-164 582.8 555 56.6
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 3.5e-164 582.4 548 56.9
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 3.5e-164 582.4 548 57.3
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 1.0e-163 580.9 554 57.8
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 1.0e-163 580.9 538 56.1
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 2.3e-163 579.7 540 56.9
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 3.0e-163 579.3 540 56.9
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 3.9e-163 578.9 557 55.7
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 3.9e-163 578.9 540 57.0
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 5.1e-163 578.6 557 55.3
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 6.6e-163 578.2 546 57.7
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 6.6e-163 578.2 549 56.8
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 6.6e-163 578.2 545 57.8
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 8.7e-163 577.8 552 57.1
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 1.5e-162 577.0 550 56.9
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 2.5e-162 576.2 550 56.9
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 2.5e-162 576.2 553 59.5
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 2.5e-162 576.2 543 57.5
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 7.3e-162 574.7 549 56.8
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 1.4e-160 570.5 556 56.8
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 1.4e-160 570.5 555 56.6
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 2.4e-160 569.7 477 63.7
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 5.3e-160 568.5 549 56.3
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 5.3e-160 568.5 550 58.7
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 5.8e-159 565.1 548 55.1
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 1.3e-158 563.9 534 58.8
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 1.1e-157 560.8 498 59.8
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 1.2e-156 557.4 486 60.7
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 4.6e-156 555.4 540 56.7
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 6.0e-156 555.1 550 55.8
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 7.9e-156 554.7 536 54.7
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 2.3e-155 553.1 540 55.9
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 3.9e-155 552.4 500 59.0
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.5e-154 550.4 560 52.0
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 4.3e-154 548.9 603 49.8
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 1.3e-153 547.4 500 57.2
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 2.1e-153 546.6 565 52.4
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 8.1e-153 544.7 549 56.5
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 1.4e-152 543.9 546 56.0
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 9.0e-152 541.2 555 53.3
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 4.9e-150 535.4 488 56.8
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 1.4e-149 533.9 482 59.5
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 6.0e-148 528.5 569 50.6
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 1.6e-145 520.4 547 53.7
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 3.7e-145 519.2 512 55.5
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 1.1e-144 517.7 518 54.1
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 4.0e-144 515.8 468 59.0
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 2.9e-142 509.6 624 47.1
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 2.9e-142 509.6 497 51.5
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 1.6e-140 503.8 502 54.2
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 2.1e-140 503.4 552 49.1
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 2.7e-140 503.1 556 52.7
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 3.3e-138 496.1 520 54.8
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 4.3e-138 495.7 549 52.3
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 5.3e-136 488.8 479 54.1
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 9.0e-136 488.0 479 53.2
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 5.5e-133 478.8 480 53.5
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 3.7e-129 466.1 459 57.1
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 1.4e-125 454.1 451 54.3
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 4.4e-122 442.6 547 44.4
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 3.7e-121 439.5 505 49.1
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 2.6e-119 433.3 466 53.0
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 8.5e-118 428.3 546 44.9
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 4.2e-117 426.0 536 43.3
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.6e-116 424.1 573 41.9
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 4.1e-112 409.5 587 39.7
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 4.1e-112 409.5 587 39.7
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.9e-109 400.6 536 41.8
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.6e-108 397.5 526 40.9
Haze_21911 Corylus avellana HOM05D004583 ORTHO05D005469 3.5e-103 379.8 324 60.8
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 3.2e-101 373.2 496 41.9
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 4.7e-100 369.4 553 38.0
Atru.chr7.2059 Acer truncatum HOM05D004583 ORTHO05D005469 1.0e-99 368.2 314 61.5
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 1.2e-95 354.8 474 50.2
CDE02G1982 Ceratophyllum demersum HOM05D004583 ORTHO05D001336 2.0e-90 337.4 358 48.3
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.1e-76 290.8 599 33.2
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.5e-74 284.6 585 34.2
MBI04_g32315_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 1.1e-72 278.5 179 70.9
Cpa.g.sc7.206 Carica papaya HOM05D004583 ORTHO05D005469 3.5e-71 273.5 164 75.0
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 3.0e-70 270.4 708 29.0
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 1.2e-68 265.0 392 42.6
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 4.4e-66 256.5 448 35.7
Cpa.g.c37634 Carica papaya HOM05D004583 ORTHO05D005469 1.3e-52 211.8 258 46.1
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 2.4e-48 197.6 186 59.1
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 4.2e-48 196.8 155 65.2
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 2.3e-46 191.0 188 49.5
Aqoxy6G01950 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 8.4e-41 172.6 273 41.0
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 8.7e-38 162.5 156 57.7
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 5.6e-37 159.8 99 70.7
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 6.2e-36 156.4 166 54.8
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 6.9e-35 152.9 148 55.4
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 3.8e-33 147.1 129 60.5
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 1.0e-30 139.0 136 55.1
Aqoxy6G01951 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 7.6e-26 122.9 90 65.6
PRCOL_00000859 Prasinoderma coloniale HOM05D004583 ORTHO05D005469 3.0e-22 110.9 181 34.3
MCO16G603 Micromonas commoda HOM05D004583 ORTHO05D005469 8.7e-22 109.4 170 33.5
Duzib150G0365 Durio zibethinus HOM05D004583 ORTHO05D005469 2.2e-17 94.7 68 58.8
TPR.G7872 Trifolium pratense HOM05D004583 ORTHO05D005469 6.5e-17 93.2 102 44.1
HPP92_022972 Vanilla planifolia HOM05D004583 ORTHO05D005469 2.3e-14 84.7 155 38.1
Cpa.g.c46051 Carica papaya HOM05D004583 ORTHO05D005469 3.2e-08 64.3 39 66.7
Cre13.g585651 Chlamydomonas reinhardtii HOM05D004583 ORTHO05D005469 6.7e-06 56.6 112 36.6


User provided reference genes

Program Settings