Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g031620 Solanum pennellii HOM05D006984 ORTHO05D008773 6.2e-146 520.8 263 100.0
Solyc12g094720.3 Solanum lycopersicum HOM05D006984 ORTHO05D008773 9.0e-137 490.3 265 94.7
PGSC0003DMG400029399 Solanum tuberosum HOM05D006984 ORTHO05D008773 4.2e-134 481.5 263 93.5
Peaxi162Scf00064g01321 Petunia axillaris HOM05D006984 ORTHO05D008773 9.7e-107 390.6 232 84.1
CAN.G208.41 Capsicum annuum HOM05D006984 ORTHO05D008773 8.2e-106 387.5 223 86.5
Nitab4.5_0000407g0010 Nicotiana tabacum HOM05D006984 ORTHO05D008773 6.3e-90 334.7 181 90.1
Nitab4.5_0003423g0020 Nicotiana tabacum HOM05D006984 ORTHO05D008773 1.5e-86 323.6 224 75.0
MSTRG.24516 Avicennia marina HOM05D006984 ORTHO05D008773 2.3e-84 316.2 233 68.2
Migut.N02987 Erythranthe guttata HOM05D006984 ORTHO05D008773 6.7e-84 314.7 244 67.2
Oeu035863.2 Olea europaea HOM05D006984 ORTHO05D008773 3.3e-83 312.4 217 71.0
Dinv13757 Davidia involucrata HOM05D006984 ORTHO05D008773 5.3e-81 305.1 226 66.4
Lsat_1_v5_gn_9_48361 Lactuca sativa HOM05D006984 ORTHO05D008773 7.7e-80 301.2 244 63.1
HanXRQChr09g0241901 Helianthus annuus HOM05D006984 ORTHO05D008773 6.5e-79 298.1 248 61.3
CSS0020436 Camellia sinensis var. sinensis HOM05D006984 ORTHO05D008773 8.5e-79 297.7 215 66.5
Cc10_g00260 Coffea canephora HOM05D006984 ORTHO05D008773 8.5e-79 297.7 238 67.6
Cpa.g.sc26.14 Carica papaya HOM05D006984 ORTHO05D008773 6.1e-77 291.6 194 70.6
QL02p015743 Quercus lobata HOM05D006984 ORTHO05D008773 6.1e-77 291.6 217 62.7
ECA232G4329 Erigeron canadensis HOM05D006984 ORTHO05D008773 1.4e-76 290.4 231 62.3
GSVIVG01013427001 Vitis vinifera HOM05D006984 ORTHO05D008773 1.5e-75 287.0 217 62.7
Actinidia17077 Actinidia chinensis HOM05D006984 ORTHO05D008773 5.7e-75 285.0 245 57.6
Atru.chr13.60 Acer truncatum HOM05D006984 ORTHO05D008773 1.7e-74 283.5 209 65.1
CiPaw.07G133500 Carya illinoinensis HOM05D006984 ORTHO05D008773 1.7e-74 283.5 256 55.1
TAR628G1538 Trochodendron aralioides HOM05D006984 ORTHO05D008773 2.2e-74 283.1 219 62.1
AUR62035170 Chenopodium quinoa HOM05D006984 ORTHO05D008773 3.7e-74 282.3 219 61.6
Sabra05G0198700 Salix brachista HOM05D006984 ORTHO05D008773 6.3e-74 281.6 242 59.5
EL10Ac1g01871 Beta vulgaris HOM05D006984 ORTHO05D008773 8.3e-74 281.2 272 55.9
AUR62024096 Chenopodium quinoa HOM05D006984 ORTHO05D008773 4.1e-73 278.9 195 67.2
SGA_v2.0_scaffold220G42646 Striga asiatica HOM05D006984 ORTHO05D008773 9.1e-73 277.7 191 70.2
Lj3P797T41 Lonicera japonica HOM05D006984 ORTHO05D008773 1.2e-72 277.3 167 78.4
Nn6g31626 Nelumbo nucifera HOM05D006984 ORTHO05D008773 5.9e-72 275.0 223 61.0
MD16G1283100 Malus domestica HOM05D006984 ORTHO05D008773 1.0e-71 274.2 230 59.6
Thecc.08G099800 Theobroma cacao HOM05D006984 ORTHO05D008773 1.3e-71 273.9 191 68.1
Lj4A811G120 Lonicera japonica HOM05D006984 ORTHO05D008773 2.3e-71 273.1 163 79.1
Duzib116G0393 Durio zibethinus HOM05D006984 ORTHO05D008773 2.9e-71 272.7 199 66.3
unitig_22.g5726 Utricularia gibba HOM05D006984 ORTHO05D008773 1.1e-70 270.8 209 66.5
Potri.005G256600 Populus trichocarpa HOM05D006984 ORTHO05D008773 2.5e-70 269.6 181 72.4
vmacro21767 Vaccinium macrocarpon HOM05D006984 ORTHO05D008773 3.2e-70 269.2 193 67.4
Cfa014138 Carpinus fangiana HOM05D006984 ORTHO05D008773 1.2e-69 267.3 226 59.7
TWI56G0056 Tripterygium wilfordii HOM05D006984 ORTHO05D008773 1.2e-69 267.3 259 55.2
FAN18G2056 Fragaria x ananassa HOM05D006984 ORTHO05D008773 1.6e-69 266.9 219 61.2
FvH4_5g26100 Fragaria vesca HOM05D006984 ORTHO05D008773 3.6e-69 265.8 223 60.1
Prupe.5G005500 Prunus persica HOM05D006984 ORTHO05D008773 8.0e-69 264.6 218 61.0
RcHm_v2.0_Chr7g0216691 Rosa chinensis HOM05D006984 ORTHO05D008773 1.0e-68 264.2 224 60.3
Ciclev10001894m.g Citrus clementina HOM05D006984 ORTHO05D008773 4.0e-68 262.3 215 60.5
Gorai.002G221600 Gossypium raimondii HOM05D006984 ORTHO05D008773 4.0e-68 262.3 197 66.0
Gohir.A01G188600 Gossypium hirsutum HOM05D006984 ORTHO05D008773 5.2e-68 261.9 197 66.0
MBI04_g31208_MAGBIO Magnolia biondii HOM05D006984 ORTHO05D008773 5.2e-68 261.9 256 55.1
Sc15g0004070 Simmondsia chinensis HOM05D006984 ORTHO05D008773 8.9e-68 261.2 166 72.3
Gohir.D01G180900 Gossypium hirsutum HOM05D006984 ORTHO05D008773 2.0e-67 260.0 197 65.5
Haze_22863 Corylus avellana HOM05D006984 ORTHO05D008773 3.4e-67 259.2 275 50.9
Lj1g0018204 Lotus japonicus HOM05D006984 ORTHO05D008773 3.4e-67 259.2 193 63.7
Manes.05G127800 Manihot esculenta HOM05D006984 ORTHO05D008773 4.4e-67 258.8 271 53.5
Aa31LG4G6540 Aethionema arabicum HOM05D006984 ORTHO05D008773 7.5e-67 258.1 216 57.9
Psat5g008560 Pisum sativum HOM05D006984 ORTHO05D008773 7.5e-67 258.1 209 58.9
THA.LOC104813736 Tarenaya hassleriana HOM05D006984 ORTHO05D008773 7.5e-67 258.1 214 57.9
CARHR070010 Cardamine hirsuta HOM05D006984 ORTHO05D008773 9.8e-67 257.7 199 63.3
Hma1.2p1_0489F.1_g164090 Hydrangea macrophylla HOM05D006984 ORTHO05D008773 9.8e-67 257.7 178 70.2
Sp5g31620 Schrenkiella parvula HOM05D006984 ORTHO05D008773 9.8e-67 257.7 261 52.1
TPR.G38185 Trifolium pratense HOM05D006984 ORTHO05D008773 1.3e-66 257.3 190 62.6
AL2G36590 Arabidopsis lyrata HOM05D006984 ORTHO05D008773 1.7e-66 256.9 193 63.7
AT1G76450 Arabidopsis thaliana HOM05D006984 ORTHO05D008773 1.7e-66 256.9 193 63.7
Medtr3g116110 Medicago truncatula HOM05D006984 ORTHO05D008773 3.7e-66 255.8 212 58.0
Ca_15385_v3 Cicer arietinum L. HOM05D006984 ORTHO05D008773 4.9e-66 255.4 195 62.6
CANSAT25G0748 Cannabis sativa HOM05D006984 ORTHO05D008773 1.4e-65 253.8 219 57.1
Carub.0002s2337 Capsella rubella HOM05D006984 ORTHO05D008773 1.4e-65 253.8 194 63.4
Eucgr.F01822 Eucalyptus grandis HOM05D006984 ORTHO05D008773 1.4e-65 253.8 236 54.2
Hund01834 Selenicereus undatus HOM05D006984 ORTHO05D008773 1.8e-65 253.4 177 66.7
Glyma.06G014500 Glycine max HOM05D006984 ORTHO05D008773 3.1e-65 252.7 204 60.3
MELO3C026518.2 Cucumis melo HOM05D006984 ORTHO05D008773 7.0e-65 251.5 217 55.8
Phvul.009G008400 Phaseolus vulgaris HOM05D006984 ORTHO05D008773 9.2e-65 251.1 194 63.4
VMungo1309G1928 Vigna mungo HOM05D006984 ORTHO05D008773 9.2e-65 251.1 193 63.2
Aqoxy6G02992 Aquilegia oxysepala HOM05D006984 ORTHO05D008773 1.2e-64 250.8 212 57.1
CsaV3_6G035930 Cucumis sativus L. HOM05D006984 ORTHO05D008773 1.6e-64 250.4 193 60.1
PSO541G1597 Papaver somniferum HOM05D006984 ORTHO05D008773 1.6e-64 250.4 265 50.9
BcaC08g47243 Brassica carinata HOM05D006984 ORTHO05D008773 2.7e-64 249.6 196 62.2
Glyma.04G014500 Glycine max HOM05D006984 ORTHO05D008773 3.5e-64 249.2 194 62.9
BraA07t31741Z Brassica rapa HOM05D006984 ORTHO05D008773 4.5e-64 248.8 196 62.2
BcaC08g47152 Brassica carinata HOM05D006984 ORTHO05D008773 7.8e-64 248.1 195 62.1
Sed0024892 Sechium edule HOM05D006984 ORTHO05D008773 1.7e-63 246.9 211 54.5
FAN13G1472 Fragaria x ananassa HOM05D006984 ORTHO05D008773 2.3e-63 246.5 256 52.3
BolC6t40095H Brassica oleracea HOM05D006984 ORTHO05D008773 3.8e-63 245.7 196 61.2
CDE05G2674 Ceratophyllum demersum HOM05D006984 ORTHO05D008773 3.8e-63 245.7 254 52.0
CDE05G0055 Ceratophyllum demersum HOM05D006984 ORTHO05D008773 1.1e-62 244.2 163 69.3
COL.COLO4_12298 Corchorus olitorius HOM05D006984 ORTHO05D008773 1.5e-62 243.8 196 61.2
Lalb_Chr23g0265511 Lupinus albus HOM05D006984 ORTHO05D008773 1.6e-61 240.4 207 57.0
Thhalv10019042m.g Eutrema salsugineum HOM05D006984 ORTHO05D008773 6.1e-61 238.4 193 61.1
A07p42120 Brassica napus HOM05D006984 ORTHO05D008773 1.8e-60 236.9 199 58.8
FAN04G1410 Fragaria x ananassa HOM05D006984 ORTHO05D008773 1.8e-60 236.9 229 55.5
arahy.Tifrunner.gnm1.ann1.H7AW2T Arachis hypogaea HOM05D006984 ORTHO05D008773 2.3e-60 236.5 219 54.8
C06p50690 Brassica napus HOM05D006984 ORTHO05D008773 3.0e-60 236.1 190 60.5
arahy.Tifrunner.gnm1.ann1.QT2TB5 Arachis hypogaea HOM05D006984 ORTHO05D008773 6.8e-60 235.0 220 54.1
FAN08G1099 Fragaria x ananassa HOM05D006984 ORTHO05D008773 3.4e-59 232.6 189 62.4
Os08g0512500 Oryza sativa ssp. japonica HOM05D006984 ORTHO05D008773 1.7e-58 230.3 204 55.4
ClCG08G009180 Citrullus lanatus HOM05D006984 ORTHO05D008773 5.4e-57 225.3 252 47.2
Rhsim06G0003200 Rhododendron simsii HOM05D006984 ORTHO05D008773 7.0e-57 224.9 298 43.6
ATR0001G027 Amborella trichopoda HOM05D006984 ORTHO05D008773 3.0e-55 219.5 183 58.5
PGR083G2821 Punica granatum HOM05D006984 ORTHO05D008773 4.7e-53 212.2 207 53.6
Mapoly0008s0218 Marchantia polymorpha HOM05D006984 ORTHO05D008773 6.8e-52 208.4 253 42.7
PGSC0003DMG400008742 Solanum tuberosum HOM05D006984 ORTHO05D008773 1.5e-51 207.2 126 87.3
Hma1.2p1_0489F.1_g164100 Hydrangea macrophylla HOM05D006984 ORTHO05D008773 1.1e-49 201.1 120 78.3
Pp3c4_15070 Physcomitrium patens HOM05D006984 ORTHO05D008773 1.4e-49 200.7 255 42.0
AagrBONN_evm.TU.Sc2ySwM_117.1863 Anthoceros agrestis HOM05D006984 ORTHO05D008773 3.5e-40 169.5 136 55.1
Ah.11g041950 Amaranthus hybridus HOM05D006984 ORTHO05D008773 7.3e-38 161.8 134 60.4
SMO245G0004 Selaginella moellendorffii HOM05D006984 ORTHO05D008773 9.5e-38 161.4 162 43.2
CBR_g51937 Chara braunii HOM05D006984 ORTHO05D008773 3.4e-35 152.9 159 45.3
PGSC0003DMG400021762 Solanum tuberosum HOM05D006984 ORTHO05D008773 4.1e-33 146.0 91 83.5
Zm00001eb035340 Zea mays HOM05D006984 ORTHO05D008773 4.3e-30 136.0 127 52.8
MCO13G452 Micromonas commoda HOM05D006984 ORTHO05D008773 1.4e-28 131.0 226 33.2
Cre10.g446350 Chlamydomonas reinhardtii HOM05D006984 ORTHO05D008773 1.4e-25 120.9 211 37.0
Sopen12g026780 Solanum pennellii HOM05D000004 ORTHO05D000002 7.8e-24 115.2 77 76.6
PRCOL_00004638 Prasinoderma coloniale HOM05D006984 ORTHO05D008773 1.0e-23 114.8 163 39.3
Medtr6g034285 Medicago truncatula HOM05D000394 ORTHO05D008773 1.8e-20 104.0 66 68.2
Psat7g136640 Pisum sativum HOM05D006984 ORTHO05D008773 6.4e-10 68.9 104 37.5
HPP92_015474 Vanilla planifolia HOM05D006984 ORTHO05D008773 1.8e-07 60.8 50 52.0
arahy.Tifrunner.gnm1.ann1.PIZC5V Arachis hypogaea HOM05D002933 ORTHO05D009221 1.9e-06 57.4 236 24.2
arahy.Tifrunner.gnm1.ann1.I4CVDG Arachis hypogaea HOM05D002933 ORTHO05D009221 4.3e-06 56.2 201 26.4
MD07G1191200 Malus domestica HOM05D002933 ORTHO05D009221 7.4e-06 55.5 217 25.3
Psat6g152440 Pisum sativum HOM05D006984 ORTHO05D000789 7.4e-06 55.5 38 60.5
Psat6g152480 Pisum sativum HOM05D006984 ORTHO05D008773 7.4e-06 55.5 94 36.2
MD01G1121500 Malus domestica HOM05D002933 ORTHO05D009221 9.6e-06 55.1 217 25.3


User provided reference genes

Program Settings