Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 1.3e-128 463.0 225 100.0
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 2.3e-125 452.2 225 97.3
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 1.8e-109 399.4 222 85.1
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 1.1e-90 337.0 212 72.2
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.4e-90 336.7 222 71.6
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 1.3e-88 330.1 194 76.8
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 3.1e-85 318.9 220 66.4
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.5e-84 316.6 220 65.0
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 2.3e-80 302.8 222 62.6
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 5.6e-79 298.1 204 65.7
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 1.5e-76 290.0 205 66.8
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 7.6e-76 287.7 213 62.4
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 1.3e-75 287.0 213 61.5
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 5.1e-72 275.0 204 60.8
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 8.6e-72 274.2 205 59.0
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 3.3e-71 272.3 220 60.0
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 4.3e-71 271.9 218 60.6
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 9.6e-71 270.8 195 62.6
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 9.6e-71 270.8 195 62.6
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 2.8e-70 269.2 213 60.1
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 4.0e-69 265.4 222 55.4
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 6.8e-69 264.6 212 58.0
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 1.2e-68 263.8 198 62.1
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 1.2e-68 263.8 195 61.0
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 2.0e-68 263.1 217 58.1
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 4.4e-68 261.9 213 56.3
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 7.6e-68 261.2 206 57.8
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 7.6e-68 261.2 189 63.0
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 9.9e-68 260.8 209 56.9
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 1.3e-67 260.4 206 56.8
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 1.3e-67 260.4 222 55.9
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 1.3e-67 260.4 211 56.9
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 1.7e-67 260.0 206 57.3
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 2.2e-67 259.6 212 55.7
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 2.2e-67 259.6 234 53.4
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 3.8e-67 258.8 198 61.6
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 6.4e-67 258.1 217 57.1
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 8.4e-67 257.7 214 57.9
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 8.4e-67 257.7 208 58.7
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 8.4e-67 257.7 202 58.4
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.4e-66 256.9 215 57.2
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.4e-66 256.9 215 57.2
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 1.9e-66 256.5 219 57.5
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 3.2e-66 255.8 204 58.3
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 5.4e-66 255.0 218 57.3
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 7.1e-66 254.6 212 59.4
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 7.1e-66 254.6 212 59.4
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 1.6e-65 253.4 208 56.7
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 2.1e-65 253.1 225 57.8
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 2.1e-65 253.1 233 51.9
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 2.7e-65 252.7 212 59.0
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.7e-65 252.7 207 58.5
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 4.6e-65 251.9 216 54.2
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 4.6e-65 251.9 214 56.1
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 6.0e-65 251.5 212 59.0
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 1.3e-64 250.4 204 56.9
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 1.3e-64 250.4 193 58.5
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 2.3e-64 249.6 196 61.7
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 2.3e-64 249.6 188 60.1
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 2.3e-64 249.6 203 56.7
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 3.9e-64 248.8 196 55.6
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 3.9e-64 248.8 198 57.6
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 2.5e-63 246.1 216 53.7
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 3.3e-63 245.7 211 53.6
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 4.3e-63 245.4 207 56.0
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 5.6e-63 245.0 213 56.3
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 9.6e-63 244.2 203 55.7
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 1.3e-62 243.8 208 55.3
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 1.3e-62 243.8 213 54.9
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 1.6e-62 243.4 212 56.6
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 2.1e-62 243.0 214 54.2
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 2.1e-62 243.0 203 55.7
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 3.6e-62 242.3 188 59.6
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 4.8e-62 241.9 213 55.4
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 4.8e-62 241.9 213 55.4
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 6.2e-62 241.5 200 54.5
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 6.2e-62 241.5 207 55.6
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 6.2e-62 241.5 212 53.3
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 8.1e-62 241.1 207 55.6
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 8.1e-62 241.1 205 57.1
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 1.1e-61 240.7 214 51.4
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 2.4e-61 239.6 213 54.5
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 4.0e-61 238.8 207 55.1
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 4.0e-61 238.8 214 54.2
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 6.9e-61 238.0 216 54.2
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 6.9e-61 238.0 214 52.8
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 6.9e-61 238.0 213 53.1
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 9.0e-61 237.7 212 55.7
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 2.6e-60 236.1 213 52.1
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 2.6e-60 236.1 220 53.6
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 4.4e-60 235.3 205 53.2
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 4.4e-60 235.3 243 47.7
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 5.8e-60 235.0 210 51.4
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 7.6e-60 234.6 213 53.5
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 9.9e-60 234.2 198 56.1
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 1.3e-59 233.8 193 52.8
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 2.2e-59 233.0 169 62.1
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 3.8e-59 232.3 188 55.3
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 4.9e-59 231.9 199 53.8
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 6.4e-59 231.5 212 52.8
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 6.4e-59 231.5 201 54.2
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 1.4e-58 230.3 214 51.9
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 2.4e-58 229.6 211 50.2
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 3.2e-58 229.2 196 55.6
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 4.2e-58 228.8 207 52.7
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 5.4e-58 228.4 211 52.6
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 7.1e-58 228.0 213 53.1
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 7.1e-58 228.0 194 56.2
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 7.1e-58 228.0 193 56.0
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 9.3e-58 227.6 209 50.7
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 2.1e-57 226.5 213 52.6
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 3.5e-57 225.7 216 49.5
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 7.9e-57 224.6 214 50.5
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 7.9e-57 224.6 213 51.6
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 1.3e-56 223.8 213 51.2
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 1.7e-56 223.4 214 51.4
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 2.3e-56 223.0 213 51.2
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 5.1e-56 221.9 214 51.9
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 5.1e-56 221.9 213 51.6
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 1.1e-55 220.7 214 50.9
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 1.1e-55 220.7 197 53.8
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 1.5e-55 220.3 213 51.2
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 1.5e-55 220.3 213 51.2
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 1.9e-55 219.9 222 49.5
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 3.3e-55 219.2 224 46.9
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 9.6e-55 217.6 203 51.2
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 9.6e-55 217.6 199 49.2
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 1.3e-54 217.2 203 51.2
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 2.8e-54 216.1 202 51.0
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 3.6e-54 215.7 244 45.9
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 4.8e-54 215.3 214 49.5
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 4.8e-54 215.3 203 50.7
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 4.8e-54 215.3 209 49.3
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 4.8e-54 215.3 199 48.7
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 1.8e-53 213.4 204 51.0
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 4.0e-53 212.2 222 47.3
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 9.0e-53 211.1 231 47.2
Rhsim06G0013400 Rhododendron simsii HOM05D000901 ORTHO05D004766 1.7e-51 206.8 153 61.4
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 1.9e-50 203.4 232 45.7
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 1.1e-47 194.1 217 47.5
FAN27G1122 Fragaria x ananassa HOM05D000901 ORTHO05D001160 6.2e-46 188.3 174 50.6
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 2.4e-45 186.4 200 50.5
Thhalv10010046m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 9.3e-42 174.5 172 51.2
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 2.1e-41 173.3 130 60.8
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 7.9e-41 171.4 128 62.5
Oeu048720.1 Olea europaea HOM05D000901 ORTHO05D004766 2.5e-39 166.4 103 70.9
Pp3c23_11410 Physcomitrium patens HOM05D000901 ORTHO05D004766 2.8e-38 162.9 211 41.2
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 5.3e-37 158.7 197 41.1
Mapoly0103s0033 Marchantia polymorpha HOM05D000901 ORTHO05D004766 1.2e-36 157.5 207 41.1
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 3.4e-36 156.0 131 55.0
MSTRG.25272 Avicennia marina HOM05D000901 ORTHO05D004766 2.2e-35 153.3 112 64.3
MBI05_g19938_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 4.2e-34 149.1 119 59.7
BolC1t01801H Brassica oleracea HOM05D000901 ORTHO05D004766 2.3e-32 143.3 115 60.9
Zm00001eb419520 Zea mays HOM05D000901 ORTHO05D004766 5.1e-32 142.1 133 52.6
MBI05_g47803_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 2.4e-29 133.3 135 48.1
FAN15G2950 Fragaria x ananassa HOM05D000901 ORTHO05D001160 5.3e-29 132.1 174 38.5
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 5.0e-27 125.6 95 57.9
Lj2g0002110 Lotus japonicus HOM05D000901 ORTHO05D004766 1.4e-26 124.0 139 48.2
Eucgr.L01283 Eucalyptus grandis HOM05D000901 ORTHO05D004766 5.5e-26 122.1 102 58.8
AagrBONN_evm.TU.Sc2ySwM_228.1931 Anthoceros agrestis HOM05D000901 ORTHO05D004766 6.7e-24 115.2 171 37.4
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 2.0e-23 113.6 104 50.0
BcaC09g50963 Brassica carinata HOM05D000901 ORTHO05D004766 1.7e-22 110.5 91 58.2
CBR_g10910 Chara braunii HOM05D000901 ORTHO05D004766 3.4e-20 102.8 175 30.3
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 1.7e-19 100.5 110 42.7
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 3.8e-19 99.4 110 41.8
Rhsim07G0249200 Rhododendron simsii HOM05D000901 ORTHO05D004766 1.4e-18 97.4 69 63.8
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 4.2e-18 95.9 131 38.9
CiPaw.07G144400 Carya illinoinensis HOM05D000901 ORTHO05D004766 5.5e-18 95.5 84 53.6
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 1.2e-17 94.4 103 43.7
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 4.7e-17 92.4 101 42.6
Ciclev10027478m.g Citrus clementina HOM05D000901 ORTHO05D004766 1.4e-16 90.9 91 51.6
Haze_22689 Corylus avellana HOM05D000901 ORTHO05D004766 2.3e-16 90.1 118 42.4
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 3.1e-13 79.7 84 41.7
C03p60410 Brassica napus HOM05D000901 ORTHO05D004766 5.9e-12 75.5 85 40.0
BolC3t18302H Brassica oleracea HOM05D000901 ORTHO05D004766 8.5e-11 71.6 77 40.3
Eucgr.H01097 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.1e-10 71.2 63 50.8
BcaC09g50962 Brassica carinata HOM05D000901 ORTHO05D004766 2.1e-09 67.0 57 50.9


User provided reference genes

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