Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g030790 Solanum pennellii HOM05D006157 ORTHO05D007826 1.1e-97 360.1 205 100.0
Nitab4.5_0000453g0220 Nicotiana tabacum HOM05D006157 ORTHO05D007890 2.1e-77 292.7 199 77.9
Nitab4.5_0004184g0060 Nicotiana tabacum HOM05D006157 ORTHO05D007890 7.6e-75 284.3 199 72.9
Peaxi162Scf00064g00125 Petunia axillaris HOM05D006157 ORTHO05D007826 4.6e-72 275.0 208 68.8
Solyc12g088890.3 Solanum lycopersicum HOM05D006157 ORTHO05D007890 4.6e-72 275.0 172 88.4
Nitab4.5_0001101g0070 Nicotiana tabacum HOM05D006157 ORTHO05D007826 2.5e-62 242.7 208 60.1
Nitab4.5_0000686g0050 Nicotiana tabacum HOM05D006157 ORTHO05D007826 7.6e-59 231.1 208 57.2
Peaxi162Scf00528g00414 Petunia axillaris HOM05D006157 ORTHO05D007826 3.9e-55 218.8 195 62.6
PGSC0003DMG400036180 Solanum tuberosum HOM05D006157 ORTHO05D007826 5.1e-55 218.4 208 56.7
PGSC0003DMG400015419 Solanum tuberosum HOM05D006157 ORTHO05D007826 8.7e-55 217.6 141 78.7
Sopen04g032780 Solanum pennellii HOM05D006157 ORTHO05D007826 3.8e-50 202.2 209 54.5
Cc10_g04340 Coffea canephora HOM05D006157 ORTHO05D007826 2.0e-43 179.9 229 45.4
Solyc04g079170.4 Solanum lycopersicum HOM05D006157 ORTHO05D007826 2.2e-42 176.4 203 51.2
TWI56G1258 Tripterygium wilfordii HOM05D006157 ORTHO05D007826 1.9e-41 173.3 211 45.5
Potri.002G127800 Populus trichocarpa HOM05D006157 ORTHO05D007826 1.2e-40 170.6 208 45.7
MSTRG.25101 Avicennia marina HOM05D006157 ORTHO05D007826 1.0e-39 167.5 206 44.2
Ciclev10002442m.g Citrus clementina HOM05D006157 ORTHO05D007826 5.2e-39 165.2 206 46.1
QL02p005407 Quercus lobata HOM05D006157 ORTHO05D007826 5.2e-39 165.2 203 43.3
Hma1.2p1_0718F.1_g208450 Hydrangea macrophylla HOM05D006157 ORTHO05D007826 1.1e-38 164.1 201 44.8
Prupe.1G438800 Prunus persica HOM05D006157 ORTHO05D007826 1.1e-38 164.1 204 44.6
Dinv35975 Davidia involucrata HOM05D006157 ORTHO05D007826 2.0e-38 163.3 218 43.1
Duzib116G0710 Durio zibethinus HOM05D006157 ORTHO05D007826 2.0e-38 163.3 212 42.5
MD15G1085000 Malus domestica HOM05D006157 ORTHO05D007826 7.4e-38 161.4 199 44.2
CiPaw.15G061800 Carya illinoinensis HOM05D006157 ORTHO05D007826 1.3e-37 160.6 199 50.8
Haze_17545 Corylus avellana HOM05D006157 ORTHO05D007826 1.3e-37 160.6 206 45.1
Haze_17554 Corylus avellana HOM05D006157 ORTHO05D007826 1.3e-37 160.6 206 45.1
Actinidia23263 Actinidia chinensis HOM05D006157 ORTHO05D007826 2.8e-37 159.5 215 45.1
Sabra14G0022700 Salix brachista HOM05D006157 ORTHO05D007826 2.8e-37 159.5 204 44.1
Cfa018525 Carpinus fangiana HOM05D006157 ORTHO05D007826 3.7e-37 159.1 203 44.3
Gorai.010G017900 Gossypium raimondii HOM05D006157 ORTHO05D007826 3.7e-37 159.1 214 41.1
Gohir.A06G017000 Gossypium hirsutum HOM05D006157 ORTHO05D007826 6.3e-37 158.3 214 40.7
Gohir.D06G015100 Gossypium hirsutum HOM05D006157 ORTHO05D007826 1.8e-36 156.8 214 40.7
MD08G1103700 Malus domestica HOM05D006157 ORTHO05D007826 3.1e-36 156.0 200 53.5
CSS0004131 Camellia sinensis var. sinensis HOM05D006157 ORTHO05D007826 1.2e-35 154.1 220 41.4
Manes.05G171900 Manihot esculenta HOM05D006157 ORTHO05D007826 2.0e-35 153.3 205 43.9
Manes.05G171901 Manihot esculenta HOM05D006157 ORTHO05D007826 2.0e-35 153.3 205 43.9
GSVIVG01009525001 Vitis vinifera HOM05D006157 ORTHO05D007826 1.3e-34 150.6 226 41.6
Potri.014G032300 Populus trichocarpa HOM05D006157 ORTHO05D007826 1.7e-34 150.2 209 44.5
SGA_v2.0_scaffold14G07032 Striga asiatica HOM05D006157 ORTHO05D007826 1.7e-34 150.2 211 39.8
Atru.chr13.647 Acer truncatum HOM05D006157 ORTHO05D007826 2.9e-34 149.4 207 42.0
SalBow8G3379 Salvia bowleyana HOM05D006157 ORTHO05D007826 8.5e-34 147.9 201 42.8
CsaV3_2G028070 Cucumis sativus L. HOM05D006157 ORTHO05D007826 1.1e-33 147.5 209 40.2
Manes.18G032700 Manihot esculenta HOM05D006157 ORTHO05D007826 1.1e-33 147.5 205 39.5
MELO3C010885.2 Cucumis melo HOM05D006157 ORTHO05D007826 2.5e-33 146.4 209 40.2
Lj4C53T12 Lonicera japonica HOM05D006157 ORTHO05D007826 2.5e-33 146.4 202 44.1
FAN15G3536 Fragaria x ananassa HOM05D006157 ORTHO05D007826 3.2e-33 146.0 197 42.1
Sed0015883 Sechium edule HOM05D006157 ORTHO05D007826 7.2e-33 144.8 203 39.9
FAN20G0621 Fragaria x ananassa HOM05D006157 ORTHO05D007826 9.4e-33 144.4 199 45.7
FAN27G0611 Fragaria x ananassa HOM05D006157 ORTHO05D007826 1.6e-32 143.7 199 46.7
vmacro21540 Vaccinium macrocarpon HOM05D006157 ORTHO05D007826 2.1e-32 143.3 214 39.3
Medtr1g019800 Medicago truncatula HOM05D006157 ORTHO05D007826 6.1e-32 141.7 205 38.0
FvH4_2g34660 Fragaria vesca HOM05D006157 ORTHO05D007826 8.0e-32 141.4 199 47.2
TPR.G13684 Trifolium pratense HOM05D006157 ORTHO05D007826 8.0e-32 141.4 198 39.9
ECA232G2668 Erigeron canadensis HOM05D006157 ORTHO05D007826 1.4e-31 140.6 202 41.1
TAR628G1181 Trochodendron aralioides HOM05D006157 ORTHO05D007826 1.8e-31 140.2 223 39.0
Lsat_1_v5_gn_4_124041 Lactuca sativa HOM05D006157 ORTHO05D007826 4.0e-31 139.0 216 38.9
HanXRQChr09g0267931 Helianthus annuus HOM05D006157 ORTHO05D007826 8.8e-31 137.9 212 40.6
RcHm_v2.0_Chr6g0307431 Rosa chinensis HOM05D006157 ORTHO05D007826 8.8e-31 137.9 199 40.2
Ca_13302_v3 Cicer arietinum L. HOM05D006157 ORTHO05D007826 1.2e-30 137.5 206 38.3
Nn5g30225 Nelumbo nucifera HOM05D006157 ORTHO05D007826 3.3e-30 136.0 228 36.8
Nn1g05836 Nelumbo nucifera HOM05D006157 ORTHO05D007826 4.4e-30 135.6 203 38.4
Psat6g012720 Pisum sativum HOM05D006157 ORTHO05D007826 5.7e-30 135.2 198 37.9
Lj5g0002869 Lotus japonicus HOM05D006157 ORTHO05D007826 7.5e-30 134.8 205 42.9
Gorai.005G103500 Gossypium raimondii HOM05D006157 ORTHO05D007826 2.8e-29 132.9 210 37.6
Gohir.D02G092100 Gossypium hirsutum HOM05D006157 ORTHO05D007826 3.7e-29 132.5 210 37.6
Thecc.08G011200 Theobroma cacao HOM05D006157 ORTHO05D007826 1.1e-28 131.0 158 43.7
Glyma.06G038400 Glycine max HOM05D006157 ORTHO05D007826 1.4e-28 130.6 215 38.6
Gohir.A03G079324 Gossypium hirsutum HOM05D006157 ORTHO05D007826 1.4e-28 130.6 210 37.1
Rhsim06G0048100 Rhododendron simsii HOM05D006157 ORTHO05D007826 1.4e-28 130.6 206 36.4
Glyma.04G037500 Glycine max HOM05D006157 ORTHO05D007826 4.1e-28 129.0 223 35.9
MBI02_g17343_MAGBIO Magnolia biondii HOM05D006157 ORTHO05D007826 5.3e-28 128.6 190 39.5
EL10Ac1g01781 Beta vulgaris HOM05D006157 ORTHO05D007826 7.0e-28 128.3 229 37.6
Cpa.g.c24415.4 Carica papaya HOM05D006157 ORTHO05D007826 7.0e-28 128.3 210 40.5
Lalb_Chr14g0368791 Lupinus albus HOM05D006157 ORTHO05D007826 7.0e-28 128.3 205 39.0
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 1.2e-27 127.5 163 41.7
Eucgr.F00242 Eucalyptus grandis HOM05D006157 ORTHO05D007826 1.2e-27 127.5 204 38.2
Sed0006561 Sechium edule HOM05D006157 ORTHO05D007826 1.6e-27 127.1 209 38.3
AUR62022432 Chenopodium quinoa HOM05D006157 ORTHO05D007826 2.0e-27 126.7 219 35.6
ClCG08G015710 Citrullus lanatus HOM05D006157 ORTHO05D007826 2.0e-27 126.7 194 38.7
CANSAT54G0006 Cannabis sativa HOM05D006157 ORTHO05D007826 3.5e-27 125.9 205 35.6
VMungo1309G0335 Vigna mungo HOM05D006157 ORTHO05D007826 1.3e-26 124.0 217 37.8
Migut.C00597 Erythranthe guttata HOM05D006157 ORTHO05D007826 1.5e-25 120.6 211 38.4
PGR083G2028 Punica granatum HOM05D006157 ORTHO05D007826 3.2e-25 119.4 198 36.9
Phvul.009G063700 Phaseolus vulgaris HOM05D006157 ORTHO05D007826 1.2e-24 117.5 194 35.6
Migut.N02699 Erythranthe guttata HOM05D006157 ORTHO05D007826 3.6e-24 115.9 205 37.6
AUR62039307 Chenopodium quinoa HOM05D006157 ORTHO05D007826 1.4e-23 114.0 216 32.4
Phvul.001G020800 Phaseolus vulgaris HOM05D006157 ORTHO05D007826 3.4e-22 109.4 209 34.4
Sc02g0007020 Simmondsia chinensis HOM05D006157 ORTHO05D007826 5.7e-22 108.6 207 39.1
Glyma.14G081800 Glycine max HOM05D006157 ORTHO05D007826 7.5e-22 108.2 211 33.2
Aqoxy6G01361 Aquilegia oxysepala HOM05D006157 ORTHO05D007826 1.3e-21 107.5 203 32.0
Glyma.17G243500 Glycine max HOM05D006157 ORTHO05D007826 1.7e-21 107.1 213 33.8
VMungo0647G0691 Vigna mungo HOM05D006157 ORTHO05D007826 1.7e-21 107.1 193 35.2
Ah.05g168840 Amaranthus hybridus HOM05D006157 ORTHO05D007826 2.7e-19 99.8 184 32.1
A10p06400 Brassica napus HOM05D006157 ORTHO05D007826 2.7e-19 99.8 192 33.3
AL1G53700 Arabidopsis lyrata HOM05D006157 ORTHO05D007826 4.5e-19 99.0 199 35.7
THA.LOC104806945 Tarenaya hassleriana HOM05D006157 ORTHO05D007826 4.5e-19 99.0 201 32.3
COL.COLO4_26474 Corchorus olitorius HOM05D006157 ORTHO05D007826 1.0e-18 97.8 203 30.5
Sp1g34500 Schrenkiella parvula HOM05D006157 ORTHO05D007826 1.0e-18 97.8 192 33.3
SpUn0102_0020 Schrenkiella parvula HOM05D006157 ORTHO05D007826 1.0e-18 97.8 192 33.3
BcaB07g33839 Brassica carinata HOM05D006157 ORTHO05D007826 1.3e-18 97.4 194 34.5
BolSC99t61279H Brassica oleracea HOM05D006157 ORTHO05D007826 2.9e-18 96.3 192 34.9
CARHR037020 Cardamine hirsuta HOM05D006157 ORTHO05D007826 8.6e-18 94.7 196 35.2
AT1G47410 Arabidopsis thaliana HOM05D006157 ORTHO05D007826 1.1e-17 94.4 194 32.5
C06p01910 Brassica napus HOM05D006157 ORTHO05D007826 1.9e-17 93.6 192 34.4
Thhalv10011797m.g Eutrema salsugineum HOM05D006157 ORTHO05D007826 3.2e-17 92.8 194 33.0
Carub.0001s3622 Capsella rubella HOM05D006157 ORTHO05D007826 5.5e-17 92.0 201 33.8
Aa31sc924G20 Aethionema arabicum HOM05D006157 ORTHO05D007826 9.5e-17 91.3 213 30.0
AUR62019555 Chenopodium quinoa HOM05D006157 ORTHO05D007826 1.2e-16 90.9 153 33.3
BcaC08g42947 Brassica carinata HOM05D006157 ORTHO05D007826 2.8e-16 89.7 78 56.4
Actinidia22616 Actinidia chinensis HOM05D006157 ORTHO05D007826 1.0e-15 87.8 157 36.3
PSO541G3363 Papaver somniferum HOM05D006157 ORTHO05D007826 1.7e-13 80.5 226 28.8
unitig_22.g6773 Utricularia gibba HOM05D006157 ORTHO05D007826 8.3e-13 78.2 188 31.9
Duzib093G2157 Durio zibethinus HOM05D006157 ORTHO05D007826 3.1e-12 76.3 101 38.6
ATR0100G006 Amborella trichopoda HOM05D006157 ORTHO05D007826 5.0e-10 68.9 158 35.4
arahy.Tifrunner.gnm1.ann1.HUL940 Arachis hypogaea HOM05D006157 ORTHO05D007826 1.5e-09 67.4 43 67.4
arahy.Tifrunner.gnm1.ann1.R9H0NA Arachis hypogaea HOM05D006157 ORTHO05D007826 1.5e-09 67.4 43 67.4
PSO675G5393 Papaver somniferum HOM05D006157 ORTHO05D007826 7.3e-09 65.1 45 62.2
SalBow8G4867 Salvia bowleyana HOM05D006157 ORTHO05D007826 7.3e-09 65.1 67 50.7
ATR0100G061 Amborella trichopoda HOM05D006157 ORTHO05D007826 2.1e-08 63.5 158 34.2
Os09g0460100 Oryza sativa ssp. japonica HOM05D006157 ORTHO05D007826 8.9e-07 58.2 215 38.1
Zm00001eb315050 Zea mays HOM05D006157 ORTHO05D007826 1.2e-06 57.8 89 38.2
Zm00001eb100900 Zea mays HOM05D006157 ORTHO05D007826 2.0e-06 57.0 47 53.2
FvH4_2g34701 Fragaria vesca HOM05D006157 ORTHO05D007826 7.5e-06 55.1 111 46.8


User provided reference genes

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