Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 5.7e-130 467.6 239 100.0
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 4.8e-129 464.5 239 99.2
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 5.3e-128 461.1 239 98.3
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 1.9e-122 442.6 239 95.0
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 4.2e-109 398.3 239 82.4
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 1.6e-108 396.4 239 81.6
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 4.7e-108 394.8 239 82.0
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 1.8e-107 392.9 239 83.7
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 2.0e-106 389.4 239 81.6
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 3.3e-106 388.7 239 81.2
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 4.4e-106 388.3 239 79.9
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 5.7e-106 387.9 239 80.3
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 2.2e-105 386.0 234 81.6
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 4.1e-104 381.7 239 78.2
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 3.5e-103 378.6 233 81.5
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 7.7e-103 377.5 236 79.7
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 1.3e-102 376.7 235 77.0
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.7e-102 376.3 239 83.7
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 2.2e-102 375.9 235 77.4
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 1.1e-101 373.6 238 76.9
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 1.9e-101 372.9 234 79.1
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 2.5e-101 372.5 236 77.5
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 4.2e-101 371.7 233 78.1
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 5.5e-101 371.3 233 77.7
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 7.2e-101 370.9 226 80.5
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 1.2e-100 370.2 236 77.1
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 1.2e-100 370.2 234 79.1
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 2.1e-100 369.4 233 78.1
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 2.1e-100 369.4 238 75.6
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 2.1e-100 369.4 233 79.4
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 3.6e-100 368.6 236 76.7
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 3.6e-100 368.6 236 76.7
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 4.7e-100 368.2 236 76.7
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 8.0e-100 367.5 236 76.7
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 1.0e-99 367.1 236 76.3
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 1.0e-99 367.1 236 76.7
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 1.0e-99 367.1 236 77.1
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 2.3e-99 365.9 239 77.4
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 3.0e-99 365.5 236 75.4
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 4.0e-99 365.2 236 76.3
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 4.0e-99 365.2 236 76.3
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 5.2e-99 364.8 236 75.0
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 6.7e-99 364.4 236 75.8
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 8.8e-99 364.0 233 79.0
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 1.2e-98 363.6 236 75.8
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 2.6e-98 362.5 233 77.7
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 2.6e-98 362.5 233 77.3
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 5.7e-98 361.3 236 74.6
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 9.7e-98 360.5 260 70.0
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 9.7e-98 360.5 233 77.7
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 9.7e-98 360.5 236 75.0
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 9.7e-98 360.5 232 76.7
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 1.3e-97 360.1 236 74.6
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 2.2e-97 359.4 234 76.1
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 2.2e-97 359.4 234 76.1
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 2.2e-97 359.4 233 75.1
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 2.8e-97 359.0 238 76.1
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 2.8e-97 359.0 233 76.0
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 6.3e-97 357.8 307 62.2
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 1.1e-96 357.1 233 76.4
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 2.4e-96 355.9 237 74.7
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 3.1e-96 355.5 236 75.0
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 7.0e-96 354.4 237 73.8
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 1.2e-95 353.6 233 76.8
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 1.2e-95 353.6 236 76.3
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 1.2e-95 353.6 235 71.9
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 2.7e-95 352.4 272 67.3
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 1.7e-94 349.7 236 74.2
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 1.7e-94 349.7 279 65.9
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 2.9e-94 349.0 204 84.3
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 6.5e-94 347.8 232 80.2
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 2.5e-93 345.9 234 74.4
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 3.2e-93 345.5 224 77.2
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 4.0e-91 338.6 263 68.4
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 1.5e-90 336.7 236 72.0
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 3.4e-90 335.5 228 74.1
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 5.7e-90 334.7 236 69.5
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 2.8e-89 332.4 216 79.2
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 1.4e-88 330.1 235 71.5
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 2.4e-88 329.3 206 77.7
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 3.1e-88 328.9 190 83.7
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 7.0e-88 327.8 205 81.0
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 1.2e-87 327.0 201 80.1
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 4.5e-87 325.1 208 77.4
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 1.0e-86 323.9 233 68.7
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 2.3e-86 322.8 236 64.8
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 3.8e-86 322.0 233 67.8
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 8.6e-86 320.9 233 72.1
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 3.3e-85 318.9 235 66.4
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 7.2e-85 317.8 235 66.4
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 9.5e-85 317.4 198 78.3
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 9.5e-85 317.4 201 78.1
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 1.2e-84 317.0 217 73.3
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 2.1e-84 316.2 205 78.5
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 2.8e-84 315.8 190 85.8
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 8.0e-84 314.3 234 70.1
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 8.0e-84 314.3 234 70.1
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.8e-83 313.2 225 71.1
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 6.8e-83 311.2 235 64.3
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 8.9e-83 310.8 218 72.0
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 2.0e-82 309.7 208 77.9
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 1.0e-78 297.4 170 85.3
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 6.6e-78 294.7 224 64.7
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 1.5e-77 293.5 225 64.0
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 1.9e-77 293.1 224 63.8
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 4.3e-77 292.0 224 63.4
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 4.3e-77 292.0 224 63.4
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 4.3e-77 292.0 259 65.3
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 9.5e-77 290.8 224 62.9
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 1.6e-76 290.0 196 69.4
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 8.0e-76 287.7 227 59.0
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 1.8e-75 286.6 150 96.7
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 2.9e-73 279.3 166 82.5
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 2.4e-72 276.2 185 71.4
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 2.7e-71 272.7 229 59.4
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 2.3e-70 269.6 223 57.4
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 6.6e-70 268.1 230 63.0
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 1.1e-69 267.3 166 80.1
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 9.5e-69 264.2 153 85.0
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 8.9e-67 257.7 227 55.5
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 4.1e-64 248.8 228 52.2
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 2.0e-63 246.5 219 56.2
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 7.8e-63 244.6 219 55.7
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.3e-62 243.8 201 65.7
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 2.4e-56 223.0 129 86.8
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 2.8e-52 209.5 167 60.5
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 5.8e-50 201.8 135 74.1
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 1.4e-48 197.2 135 71.9
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 4.6e-47 192.2 236 48.7
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 1.5e-45 187.2 235 46.8
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 4.0e-43 179.1 236 47.0
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 4.9e-41 172.2 106 78.3
Lalb_Chr22g0354931 Lupinus albus HOM05D004637 ORTHO05D005320 3.5e-39 166.0 111 73.9
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 4.6e-39 165.6 102 78.4
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 8.7e-38 161.4 104 76.0
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 3.1e-35 152.9 112 69.6
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 5.8e-34 148.7 265 38.9
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 1.6e-31 140.6 211 37.9
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 1.0e-30 137.9 145 49.0
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 1.8e-30 137.1 98 70.4
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 2.5e-29 133.3 213 36.2
Peaxi162Scf00160g00024 Petunia axillaris HOM05D004637 ORTHO05D005320 2.6e-26 123.2 69 89.9
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 7.9e-23 111.7 223 32.7
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 7.9e-23 111.7 223 32.7
Cc02_g27600 Coffea canephora HOM05D004637 ORTHO05D005320 6.7e-22 108.6 74 67.6
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 2.5e-21 106.7 99 61.6
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 1.8e-19 100.5 56 87.5
COL.COLO4_10117 Corchorus olitorius HOM05D004637 ORTHO05D005320 2.1e-15 87.0 49 81.6
Cre06.g261300 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 6.0e-15 85.5 196 31.1
Pp3c10_370 Physcomitrium patens HOM05D004637 ORTHO05D005320 7.9e-15 85.1 89 49.4
RcHm_v2.0_Chr1g0356881 Rosa chinensis HOM05D004637 ORTHO05D005320 2.3e-14 83.6 51 78.4
Ca_13257_v3 Cicer arietinum L. HOM05D004637 ORTHO05D005320 2.2e-12 77.0 52 69.2
BcaC01g06520 Brassica carinata HOM05D004637 ORTHO05D005320 6.3e-12 75.5 48 72.9
HPP92_014526 Vanilla planifolia HOM05D004637 ORTHO05D005320 2.6e-10 70.1 52 57.7
ATR0706G173 Amborella trichopoda HOM05D004637 ORTHO05D005320 2.2e-09 67.0 56 60.7
BcaB02g11171 Brassica carinata HOM05D037786 ORTHO05D091371 3.8e-09 66.2 50 58.0
BcaB04g17066 Brassica carinata HOM05D037786 ORTHO05D005320 5.1e-06 55.8 46 63.0


User provided reference genes

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