Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g030430 Solanum pennellii HOM05D003933 ORTHO05D004746 2.0e-149 532.3 251 100.0
Solyc12g088450.3 Solanum lycopersicum HOM05D003933 ORTHO05D004746 1.6e-146 522.7 251 98.8
PGSC0003DMG402011550 Solanum tuberosum HOM05D003933 ORTHO05D004746 9.4e-144 513.5 251 96.4
CAN.G107.7 Capsicum annuum HOM05D003933 ORTHO05D004746 4.1e-139 498.0 252 93.7
Nitab4.5_0000569g0090 Nicotiana tabacum HOM05D003933 ORTHO05D004746 2.9e-137 491.9 251 92.0
Nitab4.5_0003643g0030 Nicotiana tabacum HOM05D003933 ORTHO05D004746 4.2e-136 488.0 251 92.4
Peaxi162Scf00160g00123 Petunia axillaris HOM05D003933 ORTHO05D004746 7.5e-133 477.2 251 89.6
Cc11_g08880 Coffea canephora HOM05D003933 ORTHO05D004746 8.0e-119 430.6 250 77.2
Atru.chr11.1157 Acer truncatum HOM05D003933 ORTHO05D004746 1.3e-113 413.3 251 75.7
vmacro10631 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 2.3e-113 412.5 256 75.4
Potri.005G092000 Populus trichocarpa HOM05D003933 ORTHO05D004746 6.6e-113 411.0 252 75.8
MSTRG.890 Avicennia marina HOM05D003933 ORTHO05D004746 8.6e-113 410.6 251 76.5
Duzib132G1110 Durio zibethinus HOM05D003933 ORTHO05D004746 1.1e-112 410.2 251 75.7
TWI77G0671 Tripterygium wilfordii HOM05D003933 ORTHO05D004746 1.9e-112 409.5 251 74.1
COL.COLO4_08591 Corchorus olitorius HOM05D003933 ORTHO05D004746 3.3e-112 408.7 251 74.5
Duzib277G0001 Durio zibethinus HOM05D003933 ORTHO05D004746 5.6e-112 407.9 251 75.3
MD13G1004400 Malus domestica HOM05D003933 ORTHO05D004746 5.6e-112 407.9 250 74.0
Rhsim09G0099700 Rhododendron simsii HOM05D003933 ORTHO05D004746 5.6e-112 407.9 256 75.0
SGA_v2.0_scaffold38G15064 Striga asiatica HOM05D003933 ORTHO05D004746 9.5e-112 407.1 251 74.5
Thecc.02G159300 Theobroma cacao HOM05D003933 ORTHO05D004746 1.2e-111 406.8 251 74.1
Gohir.A13G060600 Gossypium hirsutum HOM05D003933 ORTHO05D004746 1.6e-111 406.4 251 76.5
Gorai.013G069800 Gossypium raimondii HOM05D003933 ORTHO05D004746 2.8e-111 405.6 251 76.1
RcHm_v2.0_Chr4g0446781 Rosa chinensis HOM05D003933 ORTHO05D004746 4.7e-111 404.8 251 72.9
vmacro10628 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 4.7e-111 404.8 256 74.2
CSS0045284 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 6.2e-111 404.4 253 75.5
FAN07G0849 Fragaria x ananassa HOM05D003933 ORTHO05D004746 8.1e-111 404.1 251 72.5
Nitab4.5_0004707g0060 Nicotiana tabacum HOM05D003933 ORTHO05D004746 8.1e-111 404.1 245 76.7
SalBow8G0218 Salvia bowleyana HOM05D003933 ORTHO05D004746 8.1e-111 404.1 251 72.9
DCAR_007284 Daucus carota HOM05D003933 ORTHO05D004746 1.4e-110 403.3 249 73.9
FvH4_4g36990 Fragaria vesca HOM05D003933 ORTHO05D004746 2.3e-110 402.5 251 72.1
Peaxi162Scf00081g01011 Petunia axillaris HOM05D003933 ORTHO05D004746 2.3e-110 402.5 247 74.9
Prupe.1G348200 Prunus persica HOM05D003933 ORTHO05D004746 3.1e-110 402.1 251 72.9
CiPaw.06G061200 Carya illinoinensis HOM05D003933 ORTHO05D004746 4.0e-110 401.7 251 74.9
Ciclev10031732m.g Citrus clementina HOM05D003933 ORTHO05D004746 6.8e-110 401.0 251 74.9
Gohir.D13G061300 Gossypium hirsutum HOM05D003933 ORTHO05D004746 8.9e-110 400.6 251 75.3
Manes.08G053300 Manihot esculenta HOM05D003933 ORTHO05D004746 8.9e-110 400.6 251 73.7
QL05p009967 Quercus lobata HOM05D003933 ORTHO05D004746 1.5e-109 399.8 250 74.8
ClCG10G012050 Citrullus lanatus HOM05D003933 ORTHO05D004746 2.6e-109 399.1 251 74.1
DCAR_030211 Daucus carota HOM05D003933 ORTHO05D004746 4.4e-109 398.3 250 74.4
TAR629G2222 Trochodendron aralioides HOM05D003933 ORTHO05D004746 7.6e-109 397.5 251 74.5
Lj6A748G52 Lonicera japonica HOM05D003933 ORTHO05D004746 9.9e-109 397.1 251 74.1
Cfa008748 Carpinus fangiana HOM05D003933 ORTHO05D004746 3.7e-108 395.2 253 74.3
ECA234G4145 Erigeron canadensis HOM05D003933 ORTHO05D004746 3.2e-107 392.1 252 74.2
Eucgr.J00872 Eucalyptus grandis HOM05D003933 ORTHO05D004746 3.2e-107 392.1 252 73.4
Nitab4.5_0000934g0120 Nicotiana tabacum HOM05D003933 ORTHO05D004746 3.2e-107 392.1 245 74.3
Haze_11764 Corylus avellana HOM05D003933 ORTHO05D004746 4.1e-107 391.7 251 73.7
CsaV3_3G031790 Cucumis sativus L. HOM05D003933 ORTHO05D004746 4.1e-107 391.7 251 70.9
AL6G34400 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 5.4e-107 391.3 251 73.7
MELO3C024011.2 Cucumis melo HOM05D003933 ORTHO05D004746 5.4e-107 391.3 251 71.3
CANSAT78G0638 Cannabis sativa HOM05D003933 ORTHO05D004746 1.2e-106 390.2 252 69.4
CARHR190340 Cardamine hirsuta HOM05D003933 ORTHO05D004746 1.2e-106 390.2 251 72.9
AUR62032977 Chenopodium quinoa HOM05D003933 ORTHO05D004746 1.2e-106 390.2 252 71.8
Aa31LG3G18300 Aethionema arabicum HOM05D003933 ORTHO05D004746 2.1e-106 389.4 251 72.1
Migut.L00761 Erythranthe guttata HOM05D003933 ORTHO05D004746 2.1e-106 389.4 255 71.0
Carub.0006s2098 Capsella rubella HOM05D003933 ORTHO05D004746 2.7e-106 389.0 251 73.7
Thhalv10004353m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 3.5e-106 388.7 251 73.3
AT5G23200 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 6.0e-106 387.9 251 73.3
CSS0043425 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 6.0e-106 387.9 253 72.7
PGR142G4240 Punica granatum HOM05D003933 ORTHO05D004746 7.8e-106 387.5 254 73.2
Aqoxy5G00269 Aquilegia oxysepala HOM05D003933 ORTHO05D004746 1.0e-105 387.1 251 71.7
Sed0001276 Sechium edule HOM05D003933 ORTHO05D004746 1.0e-105 387.1 252 72.2
CAN.G1054.19 Capsicum annuum HOM05D003933 ORTHO05D004746 1.7e-105 386.3 245 74.3
Sp2g23940 Schrenkiella parvula HOM05D003933 ORTHO05D004746 1.7e-105 386.3 251 72.9
Actinidia14952 Actinidia chinensis HOM05D003933 ORTHO05D004746 3.9e-105 385.2 255 72.5
Manes.09G017800 Manihot esculenta HOM05D003933 ORTHO05D004746 6.6e-105 384.4 251 71.7
Duzib248G0690 Durio zibethinus HOM05D003933 ORTHO05D004746 8.6e-105 384.0 245 71.0
THA.LOC104800863 Tarenaya hassleriana HOM05D003933 ORTHO05D004746 8.6e-105 384.0 253 73.1
PSO063G7666 Papaver somniferum HOM05D003933 ORTHO05D004746 1.9e-104 382.9 253 71.5
PSO782G2797 Papaver somniferum HOM05D003933 ORTHO05D004746 1.9e-104 382.9 253 71.5
BraA03t13757Z Brassica rapa HOM05D003933 ORTHO05D004746 4.3e-104 381.7 251 70.9
HanXRQChr12g0377651 Helianthus annuus HOM05D003933 ORTHO05D004746 4.3e-104 381.7 252 71.4
Sabra05G0076300 Salix brachista HOM05D003933 ORTHO05D004746 4.3e-104 381.7 237 74.3
A03p46330 Brassica napus HOM05D003933 ORTHO05D004746 9.6e-104 380.6 251 70.5
Cpa.g.sc0.130 Carica papaya HOM05D003933 ORTHO05D004746 9.6e-104 380.6 257 71.6
C07p44350 Brassica napus HOM05D003933 ORTHO05D004746 6.2e-103 377.9 252 70.6
BolC7t44956H Brassica oleracea HOM05D003933 ORTHO05D004746 6.2e-103 377.9 252 70.6
PGSC0003DMG400021516 Solanum tuberosum HOM05D003933 ORTHO05D004746 3.1e-102 375.6 244 73.0
Psat6g135760 Pisum sativum HOM05D003933 ORTHO05D004746 6.8e-102 374.4 251 69.3
MBI06_g32507_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 1.5e-101 373.2 252 67.9
Hund08600 Selenicereus undatus HOM05D003933 ORTHO05D004746 2.6e-101 372.5 253 69.2
arahy.Tifrunner.gnm1.ann1.2XRJ77 Arachis hypogaea HOM05D003933 ORTHO05D004746 3.4e-101 372.1 253 68.8
TPR.G29790 Trifolium pratense HOM05D003933 ORTHO05D004746 3.4e-101 372.1 251 69.3
arahy.Tifrunner.gnm1.ann1.J5HH0A Arachis hypogaea HOM05D003933 ORTHO05D004746 4.4e-101 371.7 253 68.8
Lalb_Chr10g0094951 Lupinus albus HOM05D003933 ORTHO05D004746 5.8e-101 371.3 251 68.1
EL10Ac9g22955 Beta vulgaris HOM05D003933 ORTHO05D004746 7.6e-101 370.9 252 71.4
Medtr1g037570 Medicago truncatula HOM05D003933 ORTHO05D004746 8.4e-100 367.5 251 68.5
Lsat_1_v5_gn_4_15060 Lactuca sativa HOM05D003933 ORTHO05D004746 2.4e-99 365.9 258 68.6
Glyma.09G282800 Glycine max HOM05D003933 ORTHO05D004746 3.2e-99 365.5 254 67.3
Sopen04g031790 Solanum pennellii HOM05D003933 ORTHO05D004746 3.2e-99 365.5 245 71.8
Solyc04g078160.4 Solanum lycopersicum HOM05D003933 ORTHO05D004746 4.2e-99 365.2 245 71.8
Ca_07914_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 7.1e-99 364.4 251 67.3
Phvul.003G004900 Phaseolus vulgaris HOM05D003933 ORTHO05D004746 2.1e-98 362.8 254 67.3
Lj2g0026122 Lotus japonicus HOM05D003933 ORTHO05D004746 4.6e-98 361.7 251 67.3
VMungo0251G2024 Vigna mungo HOM05D003933 ORTHO05D004746 1.1e-96 357.1 253 67.6
CSS0006186 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.9e-96 356.3 253 67.6
Os02g0634600 Oryza sativa ssp. japonica HOM05D003933 ORTHO05D004746 1.6e-95 353.2 251 65.3
unitig_26.g10014 Utricularia gibba HOM05D003933 ORTHO05D004746 1.5e-93 346.7 240 69.2
AL6G18670 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 1.3e-92 343.6 252 65.9
Zm00001eb248160 Zea mays HOM05D003933 ORTHO05D004746 4.9e-92 341.7 251 64.1
CSS0049411 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 8.4e-92 340.9 231 70.1
Hma1.2p1_0933F.1_g238310 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 9.3e-91 337.4 260 63.5
Hma1.2p1_2428F.1_g321995 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 9.3e-91 337.4 260 63.5
FAN12G2057 Fragaria x ananassa HOM05D003933 ORTHO05D004746 1.3e-89 333.6 251 62.9
CSS0013970 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.9e-88 329.7 253 63.6
CSS0027256 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 9.6e-88 327.4 251 64.1
ATR0618G423 Amborella trichopoda HOM05D003933 ORTHO05D004746 6.2e-87 324.7 257 61.1
Thhalv10013838m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 1.4e-86 323.6 247 63.6
MBI06_g23608_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 1.4e-86 323.6 252 61.1
Carub.0006s0715 Capsella rubella HOM05D003933 ORTHO05D004746 1.8e-86 323.2 246 63.8
BcaB08g37269 Brassica carinata HOM05D003933 ORTHO05D004746 5.3e-86 321.6 251 65.3
PGSC0003DMG400011553 Solanum tuberosum HOM05D003933 ORTHO05D004746 1.5e-85 320.1 156 95.5
VMungo1127G0010 Vigna mungo HOM05D003933 ORTHO05D004746 2.6e-85 319.3 245 63.3
AT5G08270 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 4.5e-85 318.5 243 62.6
Potri.005G092100 Populus trichocarpa HOM05D003933 ORTHO05D004746 1.1e-83 313.9 232 65.1
Glyma.11G100000 Glycine max HOM05D003933 ORTHO05D004746 2.4e-83 312.8 247 62.3
CDE08G0738 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 2.1e-82 309.7 251 60.6
Lj3g0018867 Lotus japonicus HOM05D003933 ORTHO05D004746 6.0e-82 308.1 245 60.4
CANSAT11G2660 Cannabis sativa HOM05D003933 ORTHO05D004746 1.8e-81 306.6 248 57.7
Lj3g0003114 Lotus japonicus HOM05D003933 ORTHO05D004746 1.9e-80 303.1 245 60.0
Lj3g0021014 Lotus japonicus HOM05D003933 ORTHO05D004746 1.9e-80 303.1 245 60.0
Lj3g0017683 Lotus japonicus HOM05D003933 ORTHO05D004746 4.3e-80 302.0 245 59.6
CARHR204870 Cardamine hirsuta HOM05D003933 ORTHO05D004746 7.4e-80 301.2 247 61.9
Gohir.A03G165000 Gossypium hirsutum HOM05D003933 ORTHO05D004746 3.7e-79 298.9 250 59.2
Lj3g0001561 Lotus japonicus HOM05D003933 ORTHO05D004746 8.1e-79 297.7 245 58.8
Lalb_Chr19g0139431 Lupinus albus HOM05D003933 ORTHO05D004746 8.1e-79 297.7 245 59.2
Gorai.005G210900 Gossypium raimondii HOM05D003933 ORTHO05D004746 3.4e-77 292.4 250 59.2
Medtr4g075120 Medicago truncatula HOM05D003933 ORTHO05D004746 4.5e-77 292.0 245 58.0
Ca_20843_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 5.8e-77 291.6 243 58.8
Gohir.D02G188200 Gossypium hirsutum HOM05D003933 ORTHO05D004746 7.6e-77 291.2 250 58.0
Ca_19016_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 6.5e-76 288.1 244 57.8
arahy.Tifrunner.gnm1.ann1.E3G1QY Arachis hypogaea HOM05D003933 ORTHO05D004746 1.9e-75 286.6 244 56.1
Sp6g34690 Schrenkiella parvula HOM05D003933 ORTHO05D004746 1.9e-75 286.6 227 61.2
Psat7g177760 Pisum sativum HOM05D003933 ORTHO05D004746 7.1e-75 284.6 245 57.6
FAN17G2963 Fragaria x ananassa HOM05D003933 ORTHO05D004746 1.2e-74 283.9 179 69.8
arahy.Tifrunner.gnm1.ann1.3AB2AC Arachis hypogaea HOM05D003933 ORTHO05D004746 1.6e-74 283.5 244 55.7
TPR.G25000 Trifolium pratense HOM05D003933 ORTHO05D004746 2.1e-74 283.1 249 56.6
SEGI_04055 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 3.0e-73 279.3 238 57.6
BolC9t59613H Brassica oleracea HOM05D003933 ORTHO05D004746 2.1e-71 273.1 249 58.6
C09p68670 Brassica napus HOM05D003933 ORTHO05D004746 3.7e-71 272.3 250 58.0
BraA10t44888Z Brassica rapa HOM05D003933 ORTHO05D004746 4.5e-69 265.4 249 57.0
Mapoly0072s0109 Marchantia polymorpha HOM05D003933 ORTHO05D004746 1.7e-68 263.5 271 49.8
A10p28410 Brassica napus HOM05D003933 ORTHO05D004746 1.1e-67 260.8 244 57.0
SMO364G0332 Selaginella moellendorffii HOM05D003933 ORTHO05D004746 1.9e-67 260.0 254 52.0
Sc10g0005110 Simmondsia chinensis HOM05D003933 ORTHO05D004746 1.6e-66 256.9 196 64.3
AagrBONN_evm.TU.Sc2ySwM_117.4016 Anthoceros agrestis HOM05D003933 ORTHO05D004746 9.7e-64 247.7 272 47.1
HPP92_008573 Vanilla planifolia HOM05D003933 ORTHO05D004746 3.7e-63 245.7 175 65.7
Pp3c10_5850 Physcomitrium patens HOM05D003933 ORTHO05D004746 6.3e-63 245.0 277 45.8
Sed0007936 Sechium edule HOM05D003933 ORTHO05D004746 2.6e-45 186.4 165 58.2
GSVIVG01026245001 Vitis vinifera HOM05D003933 ORTHO05D004746 2.6e-45 186.4 253 44.7
CBR_g6576 Chara braunii HOM05D003933 ORTHO05D004746 1.0e-44 184.5 277 39.0
MD16G1003200 Malus domestica HOM05D003933 ORTHO05D004746 1.5e-43 180.6 165 54.5
Dinv17619 Davidia involucrata HOM05D003933 ORTHO05D004746 2.7e-42 176.4 107 73.8
MCO06G263 Micromonas commoda HOM05D003933 ORTHO05D004746 1.2e-37 161.0 322 33.9
COL.COLO4_20883 Corchorus olitorius HOM05D003933 ORTHO05D004746 2.1e-34 150.2 113 61.9
C06p10890 Brassica napus HOM05D003933 ORTHO05D004746 8.8e-33 144.8 225 39.6
C02p60970 Brassica napus HOM05D003933 ORTHO05D004746 2.0e-32 143.7 225 39.1
Cre02.g086076 Chlamydomonas reinhardtii HOM05D003933 ORTHO05D004746 1.7e-28 130.6 317 28.1
BcaC03g18034 Brassica carinata HOM05D003933 ORTHO05D004746 4.9e-23 112.5 211 35.5
A02p41110 Brassica napus HOM05D003933 ORTHO05D004746 8.3e-23 111.7 68 75.0
SHI31071 Sapria himalayana HOM05D003933 ORTHO05D004746 4.1e-22 109.4 252 31.3
Dinv17620 Davidia involucrata HOM05D003933 ORTHO05D028341 5.4e-22 109.0 67 76.1
BolC2t12147H Brassica oleracea HOM05D003933 ORTHO05D028341 4.3e-11 72.8 42 78.6
BcaC03g13212 Brassica carinata HOM05D003933 ORTHO05D004746 2.3e-09 67.0 130 35.4


User provided reference genes

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