Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 4.6e-42 174.1 85 100.0
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 5.1e-41 170.6 85 97.6
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 1.6e-34 149.1 74 97.3
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 3.1e-30 134.8 86 80.2
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 4.2e-27 124.4 87 73.6
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.1e-26 122.1 84 71.4
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.5e-24 115.2 84 67.9
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 5.3e-22 107.5 79 69.6
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 7.6e-21 103.6 72 73.6
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 3.8e-20 101.3 77 63.6
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 4.9e-20 100.9 81 65.4
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 4.2e-19 97.8 85 57.6
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 3.5e-18 94.7 75 64.0
Oeu057368.1 Olea europaea HOM05D004288 ORTHO05D004997 6.0e-18 94.0 66 66.7
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 7.9e-18 93.6 76 60.5
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 1.0e-17 93.2 65 67.7
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.8e-17 92.4 75 62.7
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 1.8e-17 92.4 76 65.8
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 2.3e-17 92.0 71 67.6
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 3.0e-17 91.7 69 63.8
MSTRG.1030 Avicennia marina HOM05D004288 ORTHO05D004997 3.9e-17 91.3 65 64.6
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 5.1e-17 90.9 66 63.6
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 5.1e-17 90.9 76 65.8
Ciclev10002881m.g Citrus clementina HOM05D004288 ORTHO05D004997 6.7e-17 90.5 67 65.7
Haze_22316 Corylus avellana HOM05D004288 ORTHO05D004997 8.7e-17 90.1 65 69.2
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 8.7e-17 90.1 70 62.9
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 8.7e-17 90.1 71 64.8
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.5e-16 89.4 73 61.6
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 1.5e-16 89.4 73 61.6
Actinidia38098 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.9e-16 89.0 77 57.1
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 1.9e-16 89.0 82 54.9
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 1.9e-16 89.0 76 63.2
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 2.5e-16 88.6 72 65.3
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 2.5e-16 88.6 82 56.1
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 4.3e-16 87.8 83 54.2
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 7.4e-16 87.0 78 57.7
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 1.6e-15 85.9 76 55.3
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 1.6e-15 85.9 71 62.0
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 1.6e-15 85.9 71 62.0
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 2.2e-15 85.5 75 57.3
TAR628G0045 Trochodendron aralioides HOM05D004288 ORTHO05D004997 2.8e-15 85.1 69 62.3
CSS0041913 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 3.7e-15 84.7 84 50.0
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 3.7e-15 84.7 85 52.9
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 4.8e-15 84.3 62 69.4
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 6.3e-15 84.0 65 63.1
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 6.3e-15 84.0 74 56.8
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 8.2e-15 83.6 70 61.4
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 1.4e-14 82.8 72 63.9
CSS0005181 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 1.4e-14 82.8 85 50.6
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 1.4e-14 82.8 60 65.0
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 2.4e-14 82.0 67 62.7
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 2.4e-14 82.0 61 63.9
Sabra14G0011500 Salix brachista HOM05D004288 ORTHO05D004997 2.4e-14 82.0 68 63.2
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 3.1e-14 81.6 64 68.8
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 3.1e-14 81.6 75 56.0
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 4.1e-14 81.3 75 57.3
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 2.0e-13 79.0 75 53.3
SGA_v2.0_scaffold14G06935 Striga asiatica HOM05D004288 ORTHO05D004997 2.0e-13 79.0 78 55.1
Glyma.17G236500 Glycine max HOM05D004288 ORTHO05D004997 2.6e-13 78.6 66 66.7
CiPaw.08G113500 Carya illinoinensis HOM05D004288 ORTHO05D004997 3.4e-13 78.2 67 61.2
Rhsim07G0221200 Rhododendron simsii HOM05D004288 ORTHO05D004997 3.4e-13 78.2 59 64.4
MBI16_g22811_MAGBIO Magnolia biondii HOM05D004288 ORTHO05D004997 4.5e-13 77.8 73 56.2
COL.COLO4_28524 Corchorus olitorius HOM05D004288 ORTHO05D004997 7.7e-13 77.0 62 62.9
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 7.7e-13 77.0 73 56.2
Dinv39247 Davidia involucrata HOM05D004288 ORTHO05D004997 7.7e-13 77.0 85 49.4
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.0e-12 76.6 77 57.1
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 1.0e-12 76.6 77 57.1
CiPaw.08G049000 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.3e-12 76.3 67 61.2
Gohir.D06G020400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.3e-12 76.3 77 57.1
CiPaw.13G085100 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.7e-12 75.9 67 61.2
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 1.7e-12 75.9 63 63.5
PSO541G1266 Papaver somniferum HOM05D004288 ORTHO05D004997 2.2e-12 75.5 75 53.3
EL10As7g23804 Beta vulgaris HOM05D004288 ORTHO05D004997 2.9e-12 75.1 73 56.2
CiPaw.04G152800 Carya illinoinensis HOM05D004288 ORTHO05D004997 3.8e-12 74.7 67 61.2
MSTRG.22227 Avicennia marina HOM05D004288 ORTHO05D004997 1.4e-11 72.8 68 60.3
HanXRQChr09g0266571 Helianthus annuus HOM05D004288 ORTHO05D004997 1.4e-11 72.8 47 72.3
PSO675G1665 Papaver somniferum HOM05D004288 ORTHO05D004997 1.4e-11 72.8 69 53.6
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 1.9e-11 72.4 69 52.2
AT5G01075 Arabidopsis thaliana HOM05D004288 ORTHO05D004997 2.5e-11 72.0 54 66.7
CANSAT54G1812 Cannabis sativa HOM05D004288 ORTHO05D004997 2.5e-11 72.0 45 68.9
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 2.5e-11 72.0 70 58.6
TAR636G2516 Trochodendron aralioides HOM05D004288 ORTHO05D004997 2.5e-11 72.0 69 58.0
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 7.2e-11 70.5 82 50.0
ECA232G2356 Erigeron canadensis HOM05D004288 ORTHO05D004997 9.4e-11 70.1 60 60.0
HanXRQChr01g0027971 Helianthus annuus HOM05D004288 ORTHO05D004997 9.4e-11 70.1 70 52.9
Lsat_1_v5_gn_6_112441 Lactuca sativa HOM05D004288 ORTHO05D004997 1.2e-10 69.7 48 66.7
Migut.N02769 Erythranthe guttata HOM05D004288 ORTHO05D004997 1.6e-10 69.3 47 63.8
Glyma.14G087800 Glycine max HOM05D004288 ORTHO05D004997 2.1e-10 68.9 71 57.7
HanXRQChr11g0341661 Helianthus annuus HOM05D004288 ORTHO05D004997 2.1e-10 68.9 58 63.8
ClCG05G020480 Citrullus lanatus HOM05D004288 ORTHO05D004997 2.7e-10 68.6 40 75.0
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 2.7e-10 68.6 48 66.7
DCAR_008852 Daucus carota HOM05D004288 ORTHO05D004997 2.7e-10 68.6 88 47.7
Thhalv10015166m.g Eutrema salsugineum HOM05D004288 ORTHO05D004997 2.7e-10 68.6 51 68.6
Carub.0006s0080 Capsella rubella HOM05D004288 ORTHO05D004997 4.6e-10 67.8 46 73.9
Lsat_1_v5_gn_4_130821 Lactuca sativa HOM05D004288 ORTHO05D004997 4.6e-10 67.8 65 56.9
Psat6g016040 Pisum sativum HOM05D004288 ORTHO05D004997 4.6e-10 67.8 71 54.9
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 4.6e-10 67.8 66 45.5
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 6.1e-10 67.4 66 56.1
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 6.1e-10 67.4 66 56.1
Os03g0206201 Oryza sativa ssp. japonica HOM05D004288 ORTHO05D004997 6.1e-10 67.4 39 69.2
unitig_8.g4880 Utricularia gibba HOM05D004288 ORTHO05D004997 6.1e-10 67.4 70 45.7
TPR.G11815 Trifolium pratense HOM05D004288 ORTHO05D004997 7.9e-10 67.0 69 50.7
GSVIVG01037855001 Vitis vinifera HOM05D004288 ORTHO05D004997 7.9e-10 67.0 68 51.5
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.0e-09 66.6 48 64.6
RcHm_v2.0_Chr6g0309361 Rosa chinensis HOM05D004288 ORTHO05D004997 1.0e-09 66.6 77 51.9
TPR.G3776 Trifolium pratense HOM05D004288 ORTHO05D004997 1.0e-09 66.6 68 51.5
MELO3C032376.2 Cucumis melo HOM05D004288 ORTHO05D004997 1.4e-09 66.2 40 72.5
Sed0012219 Sechium edule HOM05D004288 ORTHO05D004997 1.4e-09 66.2 40 72.5
ClCG05G020460 Citrullus lanatus HOM05D004288 ORTHO05D004997 1.8e-09 65.9 63 57.1
PGR031G3267 Punica granatum HOM05D004288 ORTHO05D004997 1.8e-09 65.9 64 51.6
Sp6g40470 Schrenkiella parvula HOM05D004288 ORTHO05D004997 2.3e-09 65.5 40 75.0
CDE06G1799 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 3.0e-09 65.1 60 58.3
Sed0005367 Sechium edule HOM05D004288 ORTHO05D004997 3.0e-09 65.1 40 72.5
VMungo0647G1919 Vigna mungo HOM05D004288 ORTHO05D004997 3.0e-09 65.1 71 52.1
Medtr1g018470 Medicago truncatula HOM05D004288 ORTHO05D004997 5.1e-09 64.3 61 59.0
Medtr1g418505 Medicago truncatula HOM05D004288 ORTHO05D004997 5.1e-09 64.3 61 59.0
Psat6g015560 Pisum sativum HOM05D004288 ORTHO05D004997 5.1e-09 64.3 68 52.9
Zm00001eb007460 Zea mays HOM05D004288 ORTHO05D004997 5.1e-09 64.3 77 44.2
AL6G11150 Arabidopsis lyrata HOM05D004288 ORTHO05D004997 6.7e-09 63.9 39 74.4
CDE04G1463 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 6.7e-09 63.9 58 56.9
FAN15G0972 Fragaria x ananassa HOM05D004288 ORTHO05D004997 6.7e-09 63.9 66 54.5
THA.LOC104801605 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 6.7e-09 63.9 78 42.3
FAN20G2816 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.1e-08 63.2 66 53.0
Oeu059079.1 Olea europaea HOM05D004288 ORTHO05D004997 1.1e-08 63.2 83 45.8
MELO3C016806.2 Cucumis melo HOM05D004288 ORTHO05D004997 1.5e-08 62.8 66 50.0
Lj6g0004688 Lotus japonicus HOM05D004288 ORTHO05D004997 1.9e-08 62.4 66 50.0
SGA_v2.0_scaffold238G43969 Striga asiatica HOM05D004288 ORTHO05D004997 1.9e-08 62.4 74 44.6
BcaC03g13064 Brassica carinata HOM05D004288 ORTHO05D004997 2.5e-08 62.0 45 71.1
C02p00310 Brassica napus HOM05D004288 ORTHO05D004997 2.5e-08 62.0 45 71.1
BraA02t04704Z Brassica rapa HOM05D004288 ORTHO05D004997 3.3e-08 61.6 45 68.9
TAR381G1169 Trochodendron aralioides HOM05D004288 ORTHO05D004997 3.3e-08 61.6 66 53.0
BcaB05g21897 Brassica carinata HOM05D004288 ORTHO05D004997 4.3e-08 61.2 46 67.4
ECA246G3669 Erigeron canadensis HOM05D002841 ORTHO05D003158 4.3e-08 61.2 57 56.1
VMungo0647G1736 Vigna mungo HOM05D004288 ORTHO05D004997 4.3e-08 61.2 60 55.0
VMungo0647G1883 Vigna mungo HOM05D004288 ORTHO05D004997 5.7e-08 60.8 70 51.4
AUR62029595 Chenopodium quinoa HOM05D004288 ORTHO05D004997 9.7e-08 60.1 62 56.5
Sed0026714 Sechium edule HOM05D004288 ORTHO05D004997 9.7e-08 60.1 50 58.0
BolC2t06031H Brassica oleracea HOM05D004288 ORTHO05D004997 1.3e-07 59.7 45 68.9
Nn1g04602 Nelumbo nucifera HOM05D004288 ORTHO05D004997 1.3e-07 59.7 70 48.6
AUR62024064 Chenopodium quinoa HOM05D004288 ORTHO05D004997 1.7e-07 59.3 62 56.5
Phvul.001G026400 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 2.2e-07 58.9 60 50.0
AUR62024063 Chenopodium quinoa HOM05D004288 ORTHO05D004997 2.8e-07 58.5 66 53.0
Aqoxy5G00895 Aquilegia oxysepala HOM05D003189 ORTHO05D003449 3.7e-07 58.2 47 59.6
DCAR_020077 Daucus carota HOM05D004288 ORTHO05D004997 6.3e-07 57.4 39 61.5
Lalb_Chr11g0062841 Lupinus albus HOM05D004288 ORTHO05D004997 6.3e-07 57.4 71 45.1
Lj3g0011225 Lotus japonicus HOM05D004288 ORTHO05D004997 1.1e-06 56.6 68 45.6
BcaNung02758 Brassica carinata HOM05D004288 ORTHO05D004997 1.4e-06 56.2 41 65.9
C09p74500 Brassica napus HOM05D004288 ORTHO05D004997 1.4e-06 56.2 41 65.9
BolC9t60183H Brassica oleracea HOM05D004288 ORTHO05D004997 1.4e-06 56.2 41 65.9
AUR62041737 Chenopodium quinoa HOM05D004288 ORTHO05D004997 1.4e-06 56.2 67 49.3
Ciclev10029597m.g Citrus clementina HOM05D004288 ORTHO05D004997 1.4e-06 56.2 38 71.1
Lj1g0008863 Lotus japonicus HOM05D004288 ORTHO05D004997 1.4e-06 56.2 68 44.1
BcaNung06280 Brassica carinata HOM05D004288 ORTHO05D004997 3.1e-06 55.1 50 56.0
CDE04G1843 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 4.1e-06 54.7 72 37.5
PGR083G0410 Punica granatum HOM05D004288 ORTHO05D004997 4.1e-06 54.7 49 55.1
HPP92_013399 Vanilla planifolia HOM05D059585 ORTHO05D004997 6.9e-06 53.9 46 54.3
AUR62041736 Chenopodium quinoa HOM05D004288 ORTHO05D004997 9.1e-06 53.5 62 48.4


User provided reference genes

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