Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 2.3e-279 964.9 493 100.0
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 4.9e-277 957.2 493 99.0
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 1.6e-251 872.5 493 91.1
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 2.3e-218 762.3 495 78.2
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 8.2e-216 753.8 526 74.0
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.4e-202 709.9 496 73.8
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 7.2e-188 661.0 488 66.8
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 2.7e-187 659.1 491 67.2
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.8e-186 656.4 496 66.9
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 1.8e-186 656.4 474 68.1
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.3e-186 656.0 474 69.2
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 2.3e-186 656.0 469 69.5
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 1.5e-185 653.3 493 65.9
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 3.3e-185 652.1 500 66.4
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 4.4e-185 651.7 488 66.0
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 1.7e-184 649.8 482 68.0
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 4.8e-184 648.3 490 66.5
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 4.8e-184 648.3 518 63.9
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 8.2e-184 647.5 487 66.5
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 3.5e-182 642.1 469 67.4
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.0e-181 640.6 497 64.8
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 1.0e-181 640.6 491 66.8
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.9e-180 636.3 497 64.4
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 5.5e-180 634.8 471 67.5
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 5.5e-180 634.8 471 67.7
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 7.2e-180 634.4 493 64.9
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 6.1e-179 631.3 491 64.4
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 2.3e-178 629.4 493 64.7
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 2.3e-178 629.4 493 64.7
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 2.3e-178 629.4 492 64.8
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 3.0e-178 629.0 491 65.0
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 5.2e-178 628.2 500 65.2
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 6.7e-178 627.9 488 63.3
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 8.8e-178 627.5 493 64.7
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 1.5e-177 626.7 492 64.8
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 1.5e-177 626.7 511 62.4
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 3.3e-177 625.5 473 65.5
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 9.7e-177 624.0 513 62.8
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 1.3e-176 623.6 489 64.2
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.3e-176 623.6 493 64.1
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 1.7e-176 623.2 469 64.8
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 2.8e-176 622.5 482 66.0
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 4.8e-176 621.7 481 64.9
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 1.4e-175 620.2 470 66.0
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 2.4e-175 619.4 476 65.3
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 4.1e-175 618.6 481 64.4
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 5.3e-175 618.2 470 65.7
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 9.1e-175 617.5 473 64.3
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 2.7e-174 615.9 488 63.3
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 3.5e-174 615.5 473 63.2
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 1.7e-173 613.2 470 65.7
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 2.9e-173 612.5 498 63.3
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 1.1e-172 610.5 489 62.2
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 1.5e-172 610.1 503 60.2
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 1.9e-172 609.8 495 63.4
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 3.2e-172 609.0 481 62.6
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 2.1e-171 606.3 483 63.1
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 2.7e-171 605.9 482 64.7
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 3.6e-171 605.5 503 62.8
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 6.1e-171 604.7 488 62.1
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 8.0e-171 604.4 474 64.6
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 8.0e-171 604.4 492 62.0
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 1.4e-170 603.6 474 64.6
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 1.8e-170 603.2 494 60.3
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.8e-170 603.2 486 67.3
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 6.8e-170 601.3 459 65.4
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 8.8e-170 600.9 494 59.3
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 1.2e-169 600.5 487 61.0
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 5.7e-169 598.2 476 63.7
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 7.5e-169 597.8 482 61.6
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 1.7e-168 596.7 475 63.6
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 2.2e-168 596.3 497 60.6
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 2.2e-168 596.3 493 59.8
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 2.2e-168 596.3 493 59.8
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 4.8e-168 595.1 455 63.5
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 8.3e-168 594.3 473 63.6
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 1.1e-167 594.0 461 63.1
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 1.1e-167 594.0 461 63.1
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 1.4e-167 593.6 466 63.1
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 1.4e-167 593.6 501 61.1
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 1.4e-167 593.6 521 58.9
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 4.1e-167 592.0 503 61.6
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 4.1e-167 592.0 491 60.1
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 7.7e-166 587.8 474 61.6
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 1.9e-164 583.2 526 58.4
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.9e-164 583.2 423 67.1
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 1.7e-160 570.1 468 63.5
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 1.6e-158 563.5 484 60.1
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 2.1e-155 553.1 493 57.8
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 1.8e-154 550.1 534 56.2
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 1.2e-153 547.4 560 53.2
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 3.7e-152 542.3 425 63.3
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 1.9e-151 540.0 425 62.4
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.3e-148 529.3 490 57.6
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 1.8e-146 523.5 484 57.0
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 5.4e-143 511.9 496 55.0
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 2.1e-142 510.0 498 54.8
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 1.2e-139 500.7 380 62.6
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 8.1e-139 498.0 404 62.4
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 2.3e-138 496.5 393 63.1
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 6.6e-133 478.4 485 54.2
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 5.8e-121 438.7 473 49.3
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 2.2e-120 436.8 460 50.2
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 1.6e-115 420.6 355 61.4
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 1.0e-101 374.8 267 68.2
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 3.4e-97 359.8 231 73.2
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 2.5e-92 343.6 239 68.2
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 2.5e-92 343.6 239 68.2
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 8.5e-88 328.6 268 61.9
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 4.2e-87 326.2 286 59.8
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 2.0e-84 317.4 200 72.5
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 5.7e-84 315.8 201 71.6
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 7.7e-81 305.4 259 61.0
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 5.5e-79 299.3 345 45.2
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 1.2e-78 298.1 334 48.2
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 6.1e-78 295.8 321 48.3
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 8.5e-72 275.4 217 65.4
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 7.2e-71 272.3 201 67.7
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 1.2e-70 271.6 223 62.3
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 3.0e-69 266.9 186 66.7
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 3.1e-66 256.9 214 61.2
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.2e-65 255.0 223 58.7
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 5.0e-64 249.6 245 51.8
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 5.0e-64 249.6 178 69.1
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 7.0e-58 229.2 156 66.7
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 2.0e-52 211.1 163 61.3
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 7.5e-52 209.1 170 59.4
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.0e-49 201.1 172 65.7
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 3.5e-41 173.7 421 28.5
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 3.7e-35 153.7 146 61.0
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.3e-31 140.6 175 44.6
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 1.1e-29 135.6 137 52.6
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 3.4e-28 130.6 517 28.6
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 4.9e-27 126.7 100 62.0
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 1.9e-23 114.8 143 43.4
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 1.3e-19 102.1 55 85.5
Cfa022134 Carpinus fangiana HOM05D005286 ORTHO05D006348 1.7e-19 101.7 275 32.4
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 8.6e-16 89.4 61 68.9
Nitab4.5_0005379g0060 Nicotiana tabacum HOM05D005286 ORTHO05D006348 9.6e-15 85.9 114 50.0
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 6.2e-14 83.2 90 54.4
Cre10.g425200 Chlamydomonas reinhardtii HOM05D005286 ORTHO05D006348 2.6e-12 77.8 154 34.4
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 4.4e-12 77.0 57 59.6
Peaxi162Scf00151g00815 Petunia axillaris HOM05D005286 ORTHO05D006348 6.4e-11 73.2 76 51.3
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 1.6e-09 68.6 176 34.1
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 7.8e-09 66.2 49 71.4


User provided reference genes

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